Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 7.4e-56 220.3 113 100.0
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 3.2e-43 178.3 108 85.2
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 1.8e-41 172.6 101 84.2
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 1.2e-37 159.8 108 76.9
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 1.7e-36 156.0 108 75.0
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 3.8e-36 154.8 108 74.1
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 6.5e-36 154.1 108 75.0
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 3.6e-34 148.3 108 71.3
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 2.7e-29 132.1 108 64.8
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 2.7e-29 132.1 107 59.8
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 3.5e-29 131.7 107 61.7
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 3.5e-29 131.7 110 59.1
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 2.3e-28 129.0 108 63.9
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 2.3e-28 129.0 107 67.3
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 2.3e-28 129.0 107 63.6
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 3.8e-28 128.3 108 63.9
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 3.8e-28 128.3 107 60.7
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 8.6e-28 127.1 107 58.9
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 8.6e-28 127.1 108 58.3
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.1e-27 126.7 107 60.7
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 1.5e-27 126.3 107 57.9
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 2.5e-27 125.6 110 56.4
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 3.3e-27 125.2 108 62.0
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 5.6e-27 124.4 107 57.9
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 9.5e-27 123.6 107 59.8
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 1.2e-26 123.2 107 62.6
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 2.8e-26 122.1 107 57.9
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 2.8e-26 122.1 107 62.6
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 4.7e-26 121.3 107 59.8
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 8.0e-26 120.6 107 56.1
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 8.0e-26 120.6 107 58.9
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 1.0e-25 120.2 108 58.3
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 1.0e-25 120.2 107 59.8
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 1.0e-25 120.2 107 57.9
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 1.4e-25 119.8 107 59.8
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.4e-25 119.8 107 59.8
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.8e-25 119.4 107 64.5
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 3.0e-25 118.6 107 58.9
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 3.0e-25 118.6 107 61.7
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 4.0e-25 118.2 107 57.0
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 5.2e-25 117.9 107 56.1
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 5.2e-25 117.9 107 56.1
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 5.2e-25 117.9 107 56.1
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 6.8e-25 117.5 108 52.8
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 6.8e-25 117.5 107 57.9
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 6.8e-25 117.5 110 56.4
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 1.2e-24 116.7 107 54.2
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 2.0e-24 115.9 107 56.1
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 2.6e-24 115.5 107 52.3
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 3.4e-24 115.2 108 53.7
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 3.4e-24 115.2 108 57.4
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 9.8e-24 113.6 108 52.8
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 2.2e-23 112.5 108 53.7
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 2.2e-23 112.5 124 51.6
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 2.9e-23 112.1 115 53.9
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 6.4e-23 110.9 108 52.8
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 6.4e-23 110.9 109 57.8
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 6.4e-23 110.9 114 51.8
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 1.4e-22 109.8 108 53.7
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 2.4e-22 109.0 108 54.6
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 1.2e-21 106.7 107 55.1
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 1.2e-21 106.7 108 50.9
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 2.0e-21 105.9 107 51.4
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 3.5e-21 105.1 107 50.5
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 3.5e-21 105.1 107 54.2
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 4.6e-21 104.8 107 50.5
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 5.9e-21 104.4 107 51.4
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 5.9e-21 104.4 108 50.9
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 5.9e-21 104.4 107 51.4
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 7.8e-21 104.0 109 48.6
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 7.8e-21 104.0 134 47.0
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.0e-20 103.6 107 54.2
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 1.7e-20 102.8 78 69.2
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 3.0e-20 102.1 107 53.3
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 1.1e-19 100.1 107 48.6
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 1.9e-19 99.4 107 47.7
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 4.3e-19 98.2 105 50.5
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 9.5e-19 97.1 107 46.7
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.6e-18 96.3 113 50.4
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 2.1e-18 95.9 109 48.6
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 2.1e-18 95.9 107 45.8
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 2.1e-18 95.9 107 45.8
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 2.8e-18 95.5 99 51.5
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 2.8e-18 95.5 107 48.6
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 2.8e-18 95.5 112 49.1
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 1.2e-16 90.1 71 63.4
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 1.2e-16 90.1 110 45.5
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 1.5e-16 89.7 103 46.6
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 2.6e-16 89.0 72 56.9
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 3.4e-16 88.6 71 62.0
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 5.8e-16 87.8 110 45.5
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 9.8e-16 87.0 108 48.1
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 6.4e-15 84.3 108 42.6
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.9e-14 82.8 91 50.5
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 2.7e-13 79.0 73 58.9
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 4.6e-13 78.2 109 41.3
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 5.6e-11 71.2 108 40.7
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 4.0e-09 65.1 71 50.7
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 8.9e-09 63.9 103 43.7
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.5e-08 63.2 75 46.7
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 2.0e-08 62.8 107 33.6
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 1.9e-06 56.2 111 31.5


User provided reference genes

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