Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 0.0e+00 1271.1 770 100.0
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 4.6e-266 921.4 785 70.6
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 5.3e-262 907.9 818 69.9
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 1.0e-233 813.9 791 65.1
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 1.4e-233 813.5 790 63.8
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 7.7e-229 797.7 741 65.3
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 1.6e-226 790.0 791 62.3
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 1.8e-214 750.0 791 63.1
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 1.6e-213 746.9 795 60.5
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 1.9e-211 740.0 809 59.3
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 2.1e-210 736.5 786 59.5
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 3.4e-208 729.2 791 59.0
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 7.0e-206 721.5 786 60.4
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 5.8e-152 542.3 444 72.1
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 4.0e-145 519.6 815 48.0
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 9.3e-142 508.4 825 47.4
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 6.7e-140 502.3 828 47.1
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 7.9e-133 478.8 805 50.9
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.6e-130 471.1 825 44.0
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 2.0e-128 464.2 816 44.5
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 3.4e-128 463.4 807 45.2
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 2.9e-127 460.3 826 49.0
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 9.4e-126 455.3 815 44.7
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 5.1e-124 449.5 818 47.7
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 6.7e-124 449.1 797 43.4
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 4.8e-122 443.0 807 45.2
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.8e-121 441.0 798 44.0
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.1e-121 438.7 798 44.0
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 2.0e-120 437.6 794 48.7
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 2.2e-119 434.1 819 44.7
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 1.9e-118 431.0 840 47.7
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 3.2e-118 430.3 911 40.1
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 5.5e-118 429.5 815 47.9
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 1.2e-117 428.3 639 51.5
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.1e-117 427.6 818 42.8
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 7.9e-117 425.6 830 44.0
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.0e-116 425.2 793 47.3
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 2.3e-116 424.1 846 47.0
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 1.1e-113 415.2 827 45.7
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.3e-113 412.9 851 44.7
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.2e-112 411.8 819 45.9
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 2.6e-112 410.6 813 42.7
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.5e-112 410.2 832 41.1
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 4.5e-112 409.8 798 43.4
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.5e-112 409.8 793 45.5
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 5.9e-112 409.5 820 47.6
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 5.9e-112 409.5 807 45.8
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 7.7e-112 409.1 815 41.8
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 8.5e-111 405.6 783 47.3
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.7e-109 400.6 793 46.0
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.6e-109 400.2 816 42.3
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.0e-108 397.1 827 40.6
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 4.0e-108 396.7 811 47.1
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.5e-107 394.8 801 41.8
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.3e-107 393.7 816 41.5
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.8e-106 390.6 696 48.4
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 2.8e-106 390.6 815 48.0
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 3.1e-105 387.1 826 45.5
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.1e-102 378.6 468 52.4
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 9.4e-102 375.6 446 59.2
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 9.4e-102 375.6 779 45.4
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 2.1e-101 374.4 837 39.3
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 2.1e-101 374.4 816 42.3
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 2.7e-101 374.0 802 45.8
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 2.7e-101 374.0 748 40.1
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.0e-100 372.1 835 44.7
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 1.4e-100 371.7 294 74.5
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 1.4e-100 371.7 804 45.9
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.3e-100 370.9 834 40.0
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.2e-100 369.8 795 40.4
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.5e-99 368.2 839 39.3
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 7.5e-99 365.9 828 44.3
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 9.8e-99 365.5 833 40.6
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.3e-98 365.2 802 45.3
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.2e-98 364.4 839 39.9
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 7.0e-97 359.4 806 38.6
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 7.0e-97 359.4 795 43.1
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 8.5e-95 352.4 788 45.9
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 2.5e-94 350.9 844 44.2
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 9.4e-94 349.0 797 40.0
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.6e-93 348.2 801 42.8
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 6.1e-93 346.3 816 42.4
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 6.1e-93 346.3 799 39.4
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 1.0e-92 345.5 819 39.3
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.4e-91 340.5 797 37.9
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 9.8e-91 339.0 792 40.8
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.7e-90 338.2 999 34.9
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 2.2e-90 337.8 761 43.0
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 1.1e-86 325.5 810 36.8
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 1.5e-86 325.1 788 37.4
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 1.9e-86 324.7 545 48.1
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 3.3e-86 323.9 796 41.6
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 3.6e-85 320.5 789 43.0
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 8.0e-85 319.3 666 47.3
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 5.2e-84 316.6 546 52.9
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.2e-83 315.5 794 39.9
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 1.5e-83 315.1 494 49.6
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 6.4e-82 309.7 643 43.2
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 8.3e-82 309.3 806 36.6
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 3.2e-81 307.4 826 36.8
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 4.1e-81 307.0 634 44.8
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 1.6e-80 305.1 502 55.6
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 2.0e-80 304.7 400 50.5
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.3e-79 302.0 509 48.7
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 1.1e-78 298.9 749 37.7
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 2.8e-77 294.3 643 43.4
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 8.0e-77 292.7 538 45.9
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 1.4e-76 292.0 604 43.2
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 1.8e-76 291.6 807 39.0
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 3.1e-76 290.8 807 40.3
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 1.2e-75 288.9 779 40.4
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 1.5e-75 288.5 715 41.1
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 2.6e-75 287.7 728 35.7
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 5.8e-75 286.6 778 41.4
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 3.7e-74 283.9 786 41.7
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 2.4e-73 281.2 792 41.0
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 1.2e-72 278.9 795 38.6
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 1.7e-71 275.0 766 40.7
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 3.0e-71 274.2 640 45.2
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 3.3e-70 270.8 780 39.4
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 9.5e-70 269.2 665 42.1
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 1.2e-69 268.9 780 35.0
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 1.6e-69 268.5 805 36.8
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 2.1e-69 268.1 778 38.6
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 4.0e-68 263.8 704 36.6
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 1.2e-67 262.3 788 39.3
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 7.5e-67 259.6 591 44.5
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 2.2e-66 258.1 613 44.0
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.9e-65 255.0 482 46.5
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.0e-63 249.2 818 38.6
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 8.6e-63 246.1 720 38.9
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 8.9e-60 236.1 506 44.3
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 6.4e-58 229.9 581 41.5
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 4.3e-46 190.7 803 31.3
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 6.9e-44 183.3 582 35.4
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 1.2e-40 172.6 563 33.2
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 5.1e-39 167.2 180 55.0
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 4.3e-38 164.1 326 51.5
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 2.0e-35 155.2 113 69.9
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 2.0e-35 155.2 387 48.1
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 4.3e-30 137.5 416 31.0
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 4.3e-30 137.5 98 73.5
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 5.6e-30 137.1 419 32.5
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 6.2e-29 133.7 358 38.8
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 8.1e-29 133.3 92 75.0
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 4.0e-28 131.0 422 31.3
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 4.5e-27 127.5 129 58.1
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 1.9e-25 122.1 563 29.3
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 2.5e-25 121.7 538 32.2
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 4.2e-25 120.9 657 31.4
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 9.3e-25 119.8 177 48.0
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.4e-19 101.3 189 40.7
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-18 99.4 68 77.9
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.8e-18 97.8 66 77.3
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 4.6e-16 90.9 55 78.2
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 2.3e-15 88.6 62 71.0
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 4.3e-14 84.3 85 54.1
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.2e-13 82.0 404 25.7
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 9.1e-12 76.6 76 53.9
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-11 75.9 47 80.9
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.5e-11 74.3 47 78.7
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 7.9e-08 63.5 52 61.5
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.1e-06 59.7 36 80.6
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.1e-06 59.7 84 39.3
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.0e-06 58.9 36 77.8
TPR.G8204 Trifolium pratense HOM05D000108 ORTHO05D022289 2.0e-06 58.9 40 80.0
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.3e-06 58.2 36 75.0
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.3e-06 58.2 37 75.7
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.7e-06 57.4 36 75.0
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 9.7e-06 56.6 477 25.2
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.7e-06 56.6 36 72.2
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.7e-06 56.6 36 72.2


User provided reference genes

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