Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 1.2e-32 142.9 88 100.0
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 8.7e-28 126.7 87 79.3
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 4.3e-27 124.4 87 77.0
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 8.2e-26 120.2 87 75.9
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 2.4e-25 118.6 87 73.6
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 1.1e-19 99.8 87 66.7
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 2.5e-19 98.6 87 65.5
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 5.7e-19 97.4 87 66.7
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 5.7e-19 97.4 83 67.5
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 1.3e-18 96.3 87 65.5
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 8.2e-18 93.6 63 79.4
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 2.0e-16 89.0 84 59.5
Lalb_Chr03g0036861 Lupinus albus HOM05D005842 ORTHO05D007077 7.7e-16 87.0 63 73.0
TPR.G23959 Trifolium pratense HOM05D005842 ORTHO05D007077 2.9e-15 85.1 64 70.3
Psat6g108960 Pisum sativum HOM05D005842 ORTHO05D007077 2.5e-14 82.0 139 42.4
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 3.2e-14 81.6 87 52.9
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 3.2e-14 81.6 85 51.8
Medtr1g045980 Medicago truncatula HOM05D005842 ORTHO05D007077 5.5e-14 80.9 132 42.4
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 1.2e-13 79.7 86 53.5
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 1.6e-13 79.3 87 51.7
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 3.6e-13 78.2 85 52.9
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 6.1e-13 77.4 87 49.4
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 6.1e-13 77.4 87 51.7
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 2.3e-12 75.5 85 54.1
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 3.9e-12 74.7 86 51.2
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 8.8e-12 73.6 86 50.0
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 1.1e-11 73.2 82 50.0
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 1.1e-11 73.2 82 48.8
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.5e-11 72.0 87 51.7
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 3.3e-11 71.6 87 51.7
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 1.3e-10 69.7 85 49.4
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 1.7e-10 69.3 85 48.2
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.8e-10 68.6 85 48.2
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 3.7e-10 68.2 85 48.2
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 3.7e-10 68.2 85 48.2
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 4.8e-10 67.8 86 52.3
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.1e-09 66.6 85 48.2
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 1.8e-09 65.9 61 60.7
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 4.1e-09 64.7 85 49.4
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 4.1e-09 64.7 85 49.4
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 4.1e-09 64.7 85 49.4
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 4.1e-09 64.7 85 49.4
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 4.1e-09 64.7 85 49.4
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 4.1e-09 64.7 85 49.4
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 4.1e-09 64.7 85 49.4
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 4.1e-09 64.7 85 49.4
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 4.1e-09 64.7 86 48.8
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 5.3e-09 64.3 57 61.4
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 5.3e-09 64.3 87 47.1
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 6.9e-09 63.9 86 48.8
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 9.1e-09 63.5 83 45.8
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 9.1e-09 63.5 82 42.7
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 9.1e-09 63.5 85 45.9
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 9.1e-09 63.5 62 53.2
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 1.5e-08 62.8 85 45.9
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 2.0e-08 62.4 85 47.1
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 2.0e-08 62.4 88 51.1
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 2.6e-08 62.0 85 44.7
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 2.6e-08 62.0 85 44.7
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 4.5e-08 61.2 87 43.7
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 5.9e-08 60.8 62 54.8
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.7e-07 59.3 87 42.5
CsaV3_2G012270 Cucumis sativus L. HOM05D005842 ORTHO05D007077 2.2e-07 58.9 92 42.4
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.2e-07 58.9 85 43.5
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 3.8e-07 58.2 107 40.2
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 3.8e-07 58.2 85 43.5
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 3.8e-07 58.2 106 36.8
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 6.5e-07 57.4 83 43.4
Sed0009523 Sechium edule HOM05D008630 ORTHO05D010727 6.5e-07 57.4 49 63.3
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 8.5e-07 57.0 99 44.4
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 1.4e-06 56.2 106 35.8
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 1.4e-06 56.2 82 41.5
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 1.4e-06 56.2 82 41.5
Medtr1g045950 Medicago truncatula HOM05D005842 ORTHO05D007077 1.9e-06 55.8 174 29.9
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 1.9e-06 55.8 86 47.7
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 2.5e-06 55.5 83 43.4
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 2.5e-06 55.5 83 43.4
MELO3C023400.2 Cucumis melo HOM05D008630 ORTHO05D010727 3.2e-06 55.1 49 63.3
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 3.2e-06 55.1 40 62.5
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 7.2e-06 53.9 64 48.4
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 7.2e-06 53.9 83 42.2
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 7.2e-06 53.9 82 40.2
Sed0006099 Sechium edule HOM05D005842 ORTHO05D007077 7.2e-06 53.9 87 40.2
TAR362G0228 Trochodendron aralioides HOM05D005842 ORTHO05D007077 9.4e-06 53.5 85 40.0


User provided reference genes

Program Settings