Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G232600 Phaseolus vulgaris HOM05D006167 ORTHO05D007635 4.7e-25 117.1 60 100.0
Glyma.20G081600 Glycine max HOM05D006167 ORTHO05D007635 5.6e-18 93.6 62 80.6
Lj4g0015547 Lotus japonicus HOM05D006167 ORTHO05D007635 1.4e-16 89.0 62 77.4
Atru.chr4.1872 Acer truncatum HOM05D006167 ORTHO05D007635 1.9e-13 78.6 58 72.4
Ca_00011_v3 Cicer arietinum L. HOM05D006167 ORTHO05D007635 1.9e-13 78.6 61 67.2
COL.COLO4_16007 Corchorus olitorius HOM05D006167 ORTHO05D007635 5.4e-13 77.0 56 69.6
Ca_26216_v3 Cicer arietinum L. HOM05D006167 ORTHO05D007635 7.1e-13 76.6 61 65.6
Psat6g109400 Pisum sativum HOM05D006167 ORTHO05D007635 9.2e-13 76.3 62 62.9
Duzib052G0384 Durio zibethinus HOM05D006167 ORTHO05D007635 3.5e-12 74.3 56 66.1
Duzib052G0895 Durio zibethinus HOM05D006167 ORTHO05D007635 3.5e-12 74.3 56 66.1
Duzib266G0005 Durio zibethinus HOM05D006167 ORTHO05D007635 3.5e-12 74.3 56 66.1
Cfa014825 Carpinus fangiana HOM05D006167 ORTHO05D007635 4.6e-12 73.9 58 63.8
Thecc.04G269200 Theobroma cacao HOM05D006167 ORTHO05D007635 4.6e-12 73.9 56 66.1
CiPaw.01G175200 Carya illinoinensis HOM05D006167 ORTHO05D007635 6.0e-12 73.6 58 67.2
Cpa.g.sc59.38 Carica papaya HOM05D006167 ORTHO05D007635 7.8e-12 73.2 58 63.8
Lalb_Chr03g0036881 Lupinus albus HOM05D006167 ORTHO05D007635 1.0e-11 72.8 58 69.0
TWI09G0967 Tripterygium wilfordii HOM05D006167 ORTHO05D007635 1.0e-11 72.8 58 65.5
arahy.Tifrunner.gnm1.ann1.C36CE0 Arachis hypogaea HOM05D000254 ORTHO05D000165 3.9e-11 70.9 50 70.0
Sed0006558 Sechium edule HOM05D006167 ORTHO05D007635 3.9e-11 70.9 58 65.5
ClCG06G007470 Citrullus lanatus HOM05D006167 ORTHO05D007635 5.1e-11 70.5 58 63.8
CsaV3_2G012210 Cucumis sativus L. HOM05D006167 ORTHO05D007635 5.1e-11 70.5 58 63.8
MELO3C023070.2 Cucumis melo HOM05D006167 ORTHO05D007635 6.6e-11 70.1 58 62.1
Gohir.D12G087200 Gossypium hirsutum HOM05D006167 ORTHO05D007635 8.6e-11 69.7 56 64.3
Gorai.008G097400 Gossypium raimondii HOM05D006167 ORTHO05D007635 8.6e-11 69.7 56 62.5
TPR.G23974 Trifolium pratense HOM05D006167 ORTHO05D007635 1.5e-10 68.9 62 61.3
Gohir.D02G050200 Gossypium hirsutum HOM05D006167 ORTHO05D007635 2.5e-10 68.2 56 60.7
PGR004G2513 Punica granatum HOM05D006167 ORTHO05D007635 4.3e-10 67.4 51 64.7
Potri.010G063100 Populus trichocarpa HOM05D006167 ORTHO05D007635 5.6e-10 67.0 58 62.1
Prupe.1G052700 Prunus persica HOM05D006167 ORTHO05D007635 5.6e-10 67.0 58 63.8
Hma1.2p1_0112F.1_g054980 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 7.3e-10 66.6 57 59.6
Gorai.012G072500 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.2e-09 65.9 56 60.7
THA.LOC109117012 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 1.6e-09 65.5 63 57.1
Eucgr.H02882 Eucalyptus grandis HOM05D006167 ORTHO05D007635 2.1e-09 65.1 59 61.0
Gohir.D08G110800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 2.1e-09 65.1 56 58.9
EL10Ac3g06721 Beta vulgaris HOM05D006167 ORTHO05D007635 2.8e-09 64.7 58 65.5
Gohir.D11G199000 Gossypium hirsutum HOM05D006167 ORTHO05D007635 2.8e-09 64.7 56 58.9
Gorai.004G118700 Gossypium raimondii HOM05D006167 ORTHO05D007635 3.6e-09 64.3 56 58.9
Gorai.011G088300 Gossypium raimondii HOM05D006167 ORTHO05D007635 3.6e-09 64.3 56 58.9
Potri.008G174000 Populus trichocarpa HOM05D006167 ORTHO05D007635 3.6e-09 64.3 63 58.7
Gohir.D08G046000 Gossypium hirsutum HOM05D006167 ORTHO05D007635 6.2e-09 63.5 56 58.9
Gorai.008G094700 Gossypium raimondii HOM05D006167 ORTHO05D007635 6.2e-09 63.5 56 58.9
Gorai.011G155100 Gossypium raimondii HOM05D006167 ORTHO05D007635 6.2e-09 63.5 56 58.9
Gohir.D04G064600 Gossypium hirsutum HOM05D006167 ORTHO05D007635 8.1e-09 63.2 61 57.4
Nn1g03031 Nelumbo nucifera HOM05D006167 ORTHO05D007635 8.1e-09 63.2 44 63.6
AL5G12040 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 1.1e-08 62.8 63 58.7
AL5G12300 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 1.1e-08 62.8 63 58.7
CSS0017011 Camellia sinensis var. sinensis HOM05D006167 ORTHO05D007635 1.1e-08 62.8 58 56.9
CSS0046609 Camellia sinensis var. sinensis HOM05D006167 ORTHO05D007635 1.1e-08 62.8 58 56.9
CARHR219150 Cardamine hirsuta HOM05D006167 ORTHO05D007635 1.1e-08 62.8 58 56.9
THA.LOC109116489 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 1.1e-08 62.8 58 53.4
THA.LOC109116515 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 1.1e-08 62.8 58 53.4
TAR362G1146 Trochodendron aralioides HOM05D006167 ORTHO05D007635 1.1e-08 62.8 55 61.8
Dinv29784 Davidia involucrata HOM05D006167 ORTHO05D007635 1.4e-08 62.4 58 55.2
Gohir.D09G064700 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.4e-08 62.4 56 57.1
Gorai.003G103700 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.4e-08 62.4 56 60.7
Aa31LG9G4150 Aethionema arabicum HOM05D006167 ORTHO05D007635 1.8e-08 62.0 59 55.9
AL7G43090 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 3.1e-08 61.2 63 57.1
CANSAT78G0928 Cannabis sativa HOM05D006167 ORTHO05D007635 3.1e-08 61.2 59 57.6
Gorai.007G213200 Gossypium raimondii HOM05D006167 ORTHO05D007635 3.1e-08 61.2 56 57.1
BcaB04g17822 Brassica carinata HOM05D006167 ORTHO05D007635 4.0e-08 60.8 63 55.6
BcaC07g37498 Brassica carinata HOM05D006167 ORTHO05D007635 4.0e-08 60.8 63 55.6
A08p07960 Brassica napus HOM05D006167 ORTHO05D007635 4.0e-08 60.8 63 55.6
BolC8t47817H Brassica oleracea HOM05D006167 ORTHO05D007635 4.0e-08 60.8 63 55.6
BraA08t32818Z Brassica rapa HOM05D006167 ORTHO05D007635 4.0e-08 60.8 63 55.6
Gohir.D03G098800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 4.0e-08 60.8 56 58.9
Gohir.D05G314750 Gossypium hirsutum HOM05D006167 ORTHO05D007635 4.0e-08 60.8 56 57.1
AT4G13520 Arabidopsis thaliana HOM05D006167 ORTHO05D007635 5.2e-08 60.5 63 57.1
Gorai.005G130300 Gossypium raimondii HOM05D006167 ORTHO05D007635 5.2e-08 60.5 56 57.1
Lsat_1_v5_gn_1_76160 Lactuca sativa HOM05D006167 ORTHO05D007635 5.2e-08 60.5 60 58.3
Hma1.2p1_0014F.1_g009760 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 6.8e-08 60.1 59 54.2
Thhalv10026745m.g Eutrema salsugineum HOM05D006167 ORTHO05D007635 1.2e-07 59.3 63 55.6
FAN12G1688 Fragaria x ananassa HOM05D006167 ORTHO05D007635 1.5e-07 58.9 59 50.8
FAN17G0547 Fragaria x ananassa HOM05D006167 ORTHO05D007635 1.5e-07 58.9 59 50.8
Sp7g11110 Schrenkiella parvula HOM05D006167 ORTHO05D007635 1.5e-07 58.9 63 54.0
Carub.0007s2902 Capsella rubella HOM05D006167 ORTHO05D007635 2.0e-07 58.5 58 53.4
Gohir.D02G123800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 2.0e-07 58.5 56 55.4
Gorai.009G336300 Gossypium raimondii HOM05D006167 ORTHO05D007635 2.0e-07 58.5 56 53.6
HanXRQChr13g0410431 Helianthus annuus HOM05D006167 ORTHO05D007635 2.0e-07 58.5 60 55.0
Hma1.2p1_0432F.1_g151790 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 2.0e-07 58.5 53 60.4
Oeu012938.1 Olea europaea HOM05D006167 ORTHO05D007635 2.0e-07 58.5 55 61.8
Nitab4.5_0000867g0070 Nicotiana tabacum HOM05D006167 ORTHO05D007635 2.6e-07 58.2 58 55.2
Rhsim09G0043900 Rhododendron simsii HOM05D006167 ORTHO05D007635 2.6e-07 58.2 44 68.2
Gohir.D01G140700 Gossypium hirsutum HOM05D006167 ORTHO05D007635 3.4e-07 57.8 56 53.6
FvH4_4g05200 Fragaria vesca HOM05D006167 ORTHO05D007635 4.4e-07 57.4 59 49.2
CANSAT54G0143 Cannabis sativa HOM05D006167 ORTHO05D007635 5.8e-07 57.0 58 56.9
Aqoxy5G00097 Aquilegia oxysepala HOM05D006167 ORTHO05D007635 7.6e-07 56.6 53 60.4
Gohir.D04G080000 Gossypium hirsutum HOM05D006167 ORTHO05D007635 7.6e-07 56.6 56 53.6
Actinidia32969 Actinidia chinensis HOM05D006167 ORTHO05D007635 9.9e-07 56.2 60 51.7
SalBow3G0251 Salvia bowleyana HOM05D006167 ORTHO05D007635 9.9e-07 56.2 62 56.5
SalBow3G4531 Salvia bowleyana HOM05D006167 ORTHO05D007635 9.9e-07 56.2 62 56.5
Solyc12g097040.1 Solanum lycopersicum HOM05D006167 ORTHO05D007635 9.9e-07 56.2 60 55.0
SalBow5G0916 Salvia bowleyana HOM05D006167 ORTHO05D007635 1.3e-06 55.8 61 55.7
SalBow5G2020 Salvia bowleyana HOM05D006167 ORTHO05D007635 1.3e-06 55.8 61 55.7
Hma1.2p1_0144F.1_g065120 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 1.7e-06 55.5 58 50.0
RcHm_v2.0_Chr4g0396111 Rosa chinensis HOM05D006167 ORTHO05D007635 1.7e-06 55.5 57 50.9
AUR62035353 Chenopodium quinoa HOM05D006167 ORTHO05D007635 2.2e-06 55.1 54 59.3
SalBow5G4407 Salvia bowleyana HOM05D006167 ORTHO05D007635 2.9e-06 54.7 62 54.8
SalBow5G4759 Salvia bowleyana HOM05D006167 ORTHO05D007635 2.9e-06 54.7 62 54.8
Gohir.D10G139400 Gossypium hirsutum HOM05D006167 ORTHO05D007635 4.9e-06 53.9 56 51.8
Sc13g0003020 Simmondsia chinensis HOM05D006167 ORTHO05D007635 4.9e-06 53.9 58 55.2
Dinv18834 Davidia involucrata HOM05D006167 ORTHO05D007635 6.4e-06 53.5 51 56.9
Migut.N00323 Erythranthe guttata HOM05D006167 ORTHO05D007635 6.4e-06 53.5 62 53.2
Peaxi162Scf01007g00005 Petunia axillaris HOM05D006167 ORTHO05D007635 6.4e-06 53.5 66 50.0
Gorai.010G122300 Gossypium raimondii HOM05D006167 ORTHO05D007635 8.4e-06 53.1 48 58.3


User provided reference genes

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