Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 8.0e-28 126.3 62 100.0
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 5.0e-22 107.1 59 81.4
Glyma.10G076300 Glycine max HOM05D007252 ORTHO05D009074 9.8e-18 92.8 59 69.5
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 8.3e-17 89.7 62 62.9
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 7.8e-15 83.2 58 62.1
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 6.8e-11 70.1 62 50.0
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.4e-10 67.8 60 51.7
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 3.4e-10 67.8 60 51.7
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 7.5e-10 66.6 61 50.8
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 2.9e-09 64.7 55 49.1
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.9e-09 64.7 60 50.0
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 3.7e-09 64.3 60 48.3
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 8.3e-09 63.2 57 54.4
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 8.3e-09 63.2 60 46.7
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 8.3e-09 63.2 61 44.3
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 1.1e-08 62.8 60 50.0
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.4e-08 62.4 60 48.3
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.4e-08 62.4 60 46.7
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.4e-08 62.4 60 46.7
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 1.9e-08 62.0 60 45.0
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 2.4e-08 61.6 60 48.3
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 2.4e-08 61.6 60 46.7
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 3.2e-08 61.2 55 49.1
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.2e-08 61.2 60 46.7
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 5.4e-08 60.5 60 46.7
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 5.4e-08 60.5 60 46.7
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 7.1e-08 60.1 58 50.0
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 9.2e-08 59.7 58 50.0
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 9.2e-08 59.7 61 44.3
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 9.2e-08 59.7 62 43.5
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 1.2e-07 59.3 53 50.9
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 2.1e-07 58.5 58 48.3
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 2.1e-07 58.5 58 48.3
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 2.1e-07 58.5 61 41.0
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 2.1e-07 58.5 58 48.3
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 2.7e-07 58.2 56 46.4
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 2.7e-07 58.2 60 46.7
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 3.5e-07 57.8 59 44.1
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 3.5e-07 57.8 45 55.6
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 3.5e-07 57.8 60 45.0
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 3.5e-07 57.8 60 46.7
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 3.5e-07 57.8 60 41.7
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 3.5e-07 57.8 56 44.6
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 3.5e-07 57.8 61 42.6
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 4.6e-07 57.4 60 40.0
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 4.6e-07 57.4 60 46.7
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 4.6e-07 57.4 60 46.7
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 4.6e-07 57.4 60 46.7
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 4.6e-07 57.4 60 45.0
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 4.6e-07 57.4 60 46.7
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 4.6e-07 57.4 60 43.3
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 6.0e-07 57.0 58 46.6
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 6.0e-07 57.0 58 46.6
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 6.0e-07 57.0 60 43.3
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 7.8e-07 56.6 60 41.7
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 1.0e-06 56.2 59 42.4
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.0e-06 56.2 60 41.7
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.0e-06 56.2 57 45.6
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 1.0e-06 56.2 60 45.0
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 1.7e-06 55.5 60 43.3
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 1.7e-06 55.5 60 38.3
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 3.0e-06 54.7 58 46.6
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 3.0e-06 54.7 58 46.6
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 3.0e-06 54.7 50 48.0
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 3.9e-06 54.3 61 37.7
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 5.1e-06 53.9 60 43.3
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 5.1e-06 53.9 60 41.7
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 8.6e-06 53.1 61 37.7
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 8.6e-06 53.1 58 37.9


User provided reference genes

Program Settings