Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G229000 Phaseolus vulgaris HOM05D003360 ORTHO05D003759 6.4e-19 97.1 76 100.0
Glyma.13G153018 Glycine max HOM05D003360 ORTHO05D003759 1.1e-15 86.3 78 71.8
CiPaw.09G012500 Carya illinoinensis HOM05D003360 ORTHO05D003759 2.1e-14 82.0 76 64.5
Glyma.10G071100 Glycine max HOM05D003360 ORTHO05D003759 2.1e-14 82.0 79 65.8
Manes.08G024100 Manihot esculenta HOM05D003360 ORTHO05D003759 3.6e-14 81.3 74 67.6
Lalb_Chr21g0315791 Lupinus albus HOM05D003360 ORTHO05D003759 4.7e-14 80.9 76 64.5
Prupe.7G113000 Prunus persica HOM05D003360 ORTHO05D003759 4.7e-14 80.9 78 65.4
Cfa016591 Carpinus fangiana HOM05D003360 ORTHO05D003759 2.4e-13 78.6 76 61.8
Ca_26655_v3 Cicer arietinum L. HOM05D003360 ORTHO05D003759 2.4e-13 78.6 78 62.8
Lalb_Chr02g0154991 Lupinus albus HOM05D003360 ORTHO05D003759 3.1e-13 78.2 76 86.8
CiPaw.10G008200 Carya illinoinensis HOM05D003360 ORTHO05D003759 4.0e-13 77.8 76 61.8
Duzib093G2149 Durio zibethinus HOM05D003360 ORTHO05D003759 6.8e-13 77.0 74 60.8
Thecc.05G086800 Theobroma cacao HOM05D003360 ORTHO05D003759 6.8e-13 77.0 74 60.8
Haze_19591 Corylus avellana HOM05D003360 ORTHO05D003759 8.9e-13 76.6 76 59.2
ClCG10G019100 Citrullus lanatus HOM05D003360 ORTHO05D003759 1.2e-12 76.3 76 64.5
MELO3C009461.2 Cucumis melo HOM05D003360 ORTHO05D003759 1.2e-12 76.3 76 64.5
CsaV3_3G037150 Cucumis sativus L. HOM05D003360 ORTHO05D003759 1.2e-12 76.3 76 64.5
Lj5g0024704 Lotus japonicus HOM05D003360 ORTHO05D003759 1.5e-12 75.9 81 63.0
CANSAT80G2147 Cannabis sativa HOM05D003360 ORTHO05D003759 5.8e-12 73.9 78 64.1
Sed0007233 Sechium edule HOM05D003360 ORTHO05D003759 5.8e-12 73.9 72 61.1
Haze_05882 Corylus avellana HOM05D000493 ORTHO05D003759 7.6e-12 73.6 74 59.5
TWI74G1584 Tripterygium wilfordii HOM05D003360 ORTHO05D003759 9.9e-12 73.2 74 58.1
Haze_05346 Corylus avellana HOM05D003360 ORTHO05D003759 1.3e-11 72.8 73 58.9
Manes.09G056502 Manihot esculenta HOM05D003360 ORTHO05D003759 1.3e-11 72.8 75 58.7
Glyma.03G194300 Glycine max HOM05D003360 ORTHO05D003759 2.2e-11 72.0 77 58.4
Cpa.g.sc5.39 Carica papaya HOM05D003360 ORTHO05D003759 2.9e-11 71.6 74 56.8
Ciclev10013416m.g Citrus clementina HOM05D003360 ORTHO05D003759 3.8e-11 71.2 74 60.8
Glyma.19G194100 Glycine max HOM05D003360 ORTHO05D003759 3.8e-11 71.2 77 59.7
QL07p039321 Quercus lobata HOM05D003360 ORTHO05D003759 4.9e-11 70.9 77 57.1
arahy.Tifrunner.gnm1.ann1.V8S7TV Arachis hypogaea HOM05D003360 ORTHO05D003759 6.4e-11 70.5 84 69.0
arahy.Tifrunner.gnm1.ann1.YCS2XP Arachis hypogaea HOM05D003360 ORTHO05D003759 6.4e-11 70.5 84 69.0
Lj1g0000501 Lotus japonicus HOM05D003360 ORTHO05D003759 6.4e-11 70.5 76 59.2
Gohir.A09G138700 Gossypium hirsutum HOM05D003360 ORTHO05D003759 1.1e-10 69.7 77 55.8
Gorai.006G156000 Gossypium raimondii HOM05D003360 ORTHO05D003759 1.1e-10 69.7 77 55.8
Psat3g033920 Pisum sativum HOM05D003360 ORTHO05D003759 1.1e-10 69.7 76 53.9
COL.COLO4_29771 Corchorus olitorius HOM05D003360 ORTHO05D003759 1.4e-10 69.3 76 56.6
Sed0011638 Sechium edule HOM05D003360 ORTHO05D003759 1.4e-10 69.3 74 59.5
Potri.006G083201 Populus trichocarpa HOM05D003360 ORTHO05D003759 1.9e-10 68.9 76 56.6
SHI23956 Sapria himalayana HOM05D003360 ORTHO05D003759 1.9e-10 68.9 74 56.8
Medtr7g104410 Medicago truncatula HOM05D003360 ORTHO05D003759 2.4e-10 68.6 78 55.1
FAN02G1444 Fragaria x ananassa HOM05D003360 ORTHO05D003759 3.2e-10 68.2 83 56.6
GSVIVG01033826001 Vitis vinifera HOM05D003360 ORTHO05D003759 3.2e-10 68.2 74 64.9
Nn6g34941 Nelumbo nucifera HOM05D003360 ORTHO05D003759 5.4e-10 67.4 74 58.1
MD12G1023500 Malus domestica HOM05D003360 ORTHO05D003759 9.2e-10 66.6 81 54.3
Eucgr.K02053 Eucalyptus grandis HOM05D003360 ORTHO05D003759 1.2e-09 66.2 79 54.4
TPR.G19518 Trifolium pratense HOM05D003360 ORTHO05D003759 1.2e-09 66.2 79 53.2
FvH4_6g18440 Fragaria vesca HOM05D003360 ORTHO05D003759 2.1e-09 65.5 83 55.4
FAN05G2543 Fragaria x ananassa HOM05D003360 ORTHO05D003759 2.1e-09 65.5 83 55.4
FAN09G1364 Fragaria x ananassa HOM05D003360 ORTHO05D003759 2.1e-09 65.5 83 55.4
PSO384G1242 Papaver somniferum HOM05D003360 ORTHO05D003759 2.1e-09 65.5 72 55.6
Psat6g080880 Pisum sativum HOM05D003360 ORTHO05D003759 2.7e-09 65.1 73 56.2
RcHm_v2.0_Chr3g0472971 Rosa chinensis HOM05D003360 ORTHO05D003759 3.5e-09 64.7 82 54.9
TAR623G1482 Trochodendron aralioides HOM05D003360 ORTHO05D003759 6.0e-09 63.9 74 52.7
Gohir.D04G100900 Gossypium hirsutum HOM05D003360 ORTHO05D003759 7.8e-09 63.5 76 53.9
Gorai.009G404100 Gossypium raimondii HOM05D003360 ORTHO05D003759 7.8e-09 63.5 76 53.9
Gohir.A04G064385 Gossypium hirsutum HOM05D003360 ORTHO05D003759 1.0e-08 63.2 76 52.6
MD14G1020700 Malus domestica HOM05D003360 ORTHO05D003759 1.3e-08 62.8 83 60.2
TAR633G1257 Trochodendron aralioides HOM05D003360 ORTHO05D003759 1.3e-08 62.8 74 52.7
AL4G32430 Arabidopsis lyrata HOM05D003360 ORTHO05D003759 1.7e-08 62.4 32 93.8
BcaB02g09363 Brassica carinata HOM05D003360 ORTHO05D003759 1.7e-08 62.4 32 93.8
Carub.0004s1807 Capsella rubella HOM05D003360 ORTHO05D003759 1.7e-08 62.4 32 93.8
Sp4g18540 Schrenkiella parvula HOM05D003360 ORTHO05D003759 1.7e-08 62.4 32 93.8
Dinv21222 Davidia involucrata HOM05D003360 ORTHO05D003759 2.3e-08 62.0 77 51.9
THA.LOC109116419 Tarenaya hassleriana HOM05D003360 ORTHO05D003759 2.3e-08 62.0 32 93.8
EL10Ac7g16935 Beta vulgaris HOM05D003360 ORTHO05D003759 3.0e-08 61.6 32 93.8
A07p21190 Brassica napus HOM05D003360 ORTHO05D003759 3.0e-08 61.6 67 53.7
BraA07t29806Z Brassica rapa HOM05D003360 ORTHO05D003759 3.0e-08 61.6 67 53.7
CARHR130590 Cardamine hirsuta HOM05D003360 ORTHO05D003759 3.0e-08 61.6 32 90.6
Oeu009227.1 Olea europaea HOM05D003360 ORTHO05D003759 3.0e-08 61.6 74 52.7
PGR004G2902 Punica granatum HOM05D003360 ORTHO05D003759 3.0e-08 61.6 80 48.8
AL5G33550 Arabidopsis lyrata HOM05D003360 ORTHO05D003759 3.9e-08 61.2 32 90.6
BcaB01g00341 Brassica carinata HOM05D003360 ORTHO05D003759 3.9e-08 61.2 32 90.6
BcaB02g08554 Brassica carinata HOM05D003360 ORTHO05D003759 3.9e-08 61.2 32 90.6
BcaC02g09220 Brassica carinata HOM05D003360 ORTHO05D003759 3.9e-08 61.2 32 90.6
C04p40170 Brassica napus HOM05D003360 ORTHO05D003759 3.9e-08 61.2 32 90.6
BolC4t25595H Brassica oleracea HOM05D003360 ORTHO05D003759 3.9e-08 61.2 32 90.6
Carub.0005s1925 Capsella rubella HOM05D003360 ORTHO05D003759 3.9e-08 61.2 32 90.6
Sp5g09560 Schrenkiella parvula HOM05D003360 ORTHO05D003759 3.9e-08 61.2 32 90.6
HPP92_000039 Vanilla planifolia HOM05D003360 ORTHO05D003759 3.9e-08 61.2 32 90.6
HPP92_012635 Vanilla planifolia HOM05D003360 ORTHO05D003759 3.9e-08 61.2 32 90.6
BcaC02g11743 Brassica carinata HOM05D003360 ORTHO05D003759 5.1e-08 60.8 32 90.6
A05p09550 Brassica napus HOM05D003360 ORTHO05D003759 5.1e-08 60.8 32 90.6
C04p11810 Brassica napus HOM05D003360 ORTHO05D003759 5.1e-08 60.8 32 90.6
BolC4t22830H Brassica oleracea HOM05D003360 ORTHO05D003759 5.1e-08 60.8 32 90.6
CARHR162650 Cardamine hirsuta HOM05D003360 ORTHO05D003759 6.6e-08 60.5 67 56.7
Duzib128G1587 Durio zibethinus HOM05D003360 ORTHO05D003759 6.6e-08 60.5 74 54.1
BcaC01g05667 Brassica carinata HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 87.5
BcaC02g07614 Brassica carinata HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 87.5
BcaC02g07615 Brassica carinata HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 87.5
BcaC08g44595 Brassica carinata HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 87.5
A03p20030 Brassica napus HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 87.5
A04p27810 Brassica napus HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 87.5
C03p23480 Brassica napus HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 87.5
C06p20670 Brassica napus HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 87.5
BolC3t14744H Brassica oleracea HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 87.5
BolC4t28009H Brassica oleracea HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 87.5
BolC6t37250H Brassica oleracea HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 87.5
BraA03t11254Z Brassica rapa HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 87.5
BraA04t16375Z Brassica rapa HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 87.5
unitig_744.g24695 Utricularia gibba HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 87.5
HPP92_000004 Vanilla planifolia HOM05D003360 ORTHO05D003759 8.7e-08 60.1 32 90.6
AT3G52770 Arabidopsis thaliana HOM05D003360 ORTHO05D003759 1.1e-07 59.7 32 87.5
BcaB01g03851 Brassica carinata HOM05D003360 ORTHO05D003759 1.1e-07 59.7 32 87.5
A04p06710 Brassica napus HOM05D003360 ORTHO05D003759 1.1e-07 59.7 32 87.5
BraA05t19908Z Brassica rapa HOM05D003360 ORTHO05D003759 1.1e-07 59.7 32 87.5
Os04g0411200 Oryza sativa ssp. japonica HOM05D003360 ORTHO05D003759 1.1e-07 59.7 32 90.6
SalBow3G2714 Salvia bowleyana HOM05D003360 ORTHO05D003759 1.1e-07 59.7 32 87.5
MSTRG.5836 Avicennia marina HOM05D003360 ORTHO05D003759 1.5e-07 59.3 67 55.2
BcaB01g00342 Brassica carinata HOM05D003360 ORTHO05D003759 1.5e-07 59.3 67 55.2
BcaB06g28928 Brassica carinata HOM05D003360 ORTHO05D003759 1.5e-07 59.3 67 52.2
BcaC07g39642 Brassica carinata HOM05D003360 ORTHO05D003759 1.5e-07 59.3 67 55.2
A09p45850 Brassica napus HOM05D003360 ORTHO05D003759 1.5e-07 59.3 67 55.2
C08p28060 Brassica napus HOM05D003360 ORTHO05D003759 1.5e-07 59.3 67 55.2
BolC8t50417H Brassica oleracea HOM05D003360 ORTHO05D003759 1.5e-07 59.3 67 55.2
BraA09t40047Z Brassica rapa HOM05D003360 ORTHO05D003759 1.5e-07 59.3 67 55.2
Sopen09g004380 Solanum pennellii HOM05D003360 ORTHO05D003759 1.5e-07 59.3 32 87.5
PGSC0003DMG400002695 Solanum tuberosum HOM05D003360 ORTHO05D003759 1.5e-07 59.3 32 87.5
HanXRQChr02g0051411 Helianthus annuus HOM05D003360 ORTHO05D003759 1.9e-07 58.9 70 51.4
Nn2g14121 Nelumbo nucifera HOM05D003360 ORTHO05D003759 1.9e-07 58.9 74 48.6
Migut.J01052 Erythranthe guttata HOM05D003360 ORTHO05D003759 2.5e-07 58.5 67 55.2
unitig_749.g14295 Utricularia gibba HOM05D003360 ORTHO05D003759 2.5e-07 58.5 67 53.7
Zm00001eb242710 Zea mays HOM05D003360 ORTHO05D003759 2.5e-07 58.5 32 90.6
Zm00001eb421890 Zea mays HOM05D003360 ORTHO05D003759 3.3e-07 58.2 32 87.5
Aa31LG5G21450 Aethionema arabicum HOM05D003360 ORTHO05D003759 5.6e-07 57.4 32 87.5
arahy.Tifrunner.gnm1.ann1.3KS0IU Arachis hypogaea HOM05D003360 ORTHO05D003759 5.6e-07 57.4 32 87.5
arahy.Tifrunner.gnm1.ann1.W71F47 Arachis hypogaea HOM05D003360 ORTHO05D003759 5.6e-07 57.4 32 87.5
BcaB02g07817 Brassica carinata HOM05D003360 ORTHO05D003759 5.6e-07 57.4 32 87.5
CAN.G397.29 Capsicum annuum HOM05D003360 ORTHO05D003759 5.6e-07 57.4 82 56.1
Thhalv10017499m.g Eutrema salsugineum HOM05D003360 ORTHO05D003759 5.6e-07 57.4 72 52.8
Thhalv10011130m.g Eutrema salsugineum HOM05D003360 ORTHO05D003759 7.3e-07 57.0 32 84.4
Hma1.2p1_0084F.1_g043630 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 7.3e-07 57.0 75 45.3
Medtr1g060310 Medicago truncatula HOM05D003360 ORTHO05D003759 7.3e-07 57.0 32 81.2
Eucgr.A01509 Eucalyptus grandis HOM05D003360 ORTHO05D003759 9.6e-07 56.6 77 50.6
TAR636G1359 Trochodendron aralioides HOM05D003360 ORTHO05D003759 9.6e-07 56.6 32 81.2
Aqoxy4G02806 Aquilegia oxysepala HOM05D003360 ORTHO05D003759 1.2e-06 56.2 32 84.4
BNapus_Darmor_BZH_scaffold_239p00010 Brassica napus HOM05D003360 ORTHO05D003759 1.2e-06 56.2 72 51.4
C04p65310 Brassica napus HOM05D003360 ORTHO05D003759 1.2e-06 56.2 72 51.4
BraA04t18273Z Brassica rapa HOM05D003360 ORTHO05D003759 1.2e-06 56.2 72 51.4
Cfa011263 Carpinus fangiana HOM05D003360 ORTHO05D003759 1.2e-06 56.2 32 81.2
Haze_02515 Corylus avellana HOM05D003360 ORTHO05D003759 1.2e-06 56.2 32 81.2
Rhsim03G0076500 Rhododendron simsii HOM05D003360 ORTHO05D003759 1.2e-06 56.2 29 93.1
Sc20g0006220 Simmondsia chinensis HOM05D003360 ORTHO05D003759 1.2e-06 56.2 32 78.1
DCAR_013380 Daucus carota HOM05D003360 ORTHO05D003759 1.6e-06 55.8 32 84.4
CiPaw.13G038600 Carya illinoinensis HOM05D003360 ORTHO05D003759 2.1e-06 55.5 32 81.2
Cc06_g05630 Coffea canephora HOM05D003360 ORTHO05D003759 2.1e-06 55.5 78 46.2
Lsat_1_v5_gn_6_24141 Lactuca sativa HOM05D003360 ORTHO05D003759 2.8e-06 55.1 73 45.2
CSS0017316 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 3.6e-06 54.7 72 45.8
CDE02G0744 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 4.7e-06 54.3 70 45.7
CDE08G1668 Ceratophyllum demersum HOM05D003642 ORTHO05D003759 4.7e-06 54.3 71 50.7
HanXRQChr13g0402021 Helianthus annuus HOM05D003360 ORTHO05D003759 4.7e-06 54.3 70 48.6
Lsat_1_v5_gn_2_24580 Lactuca sativa HOM05D003360 ORTHO05D003759 4.7e-06 54.3 70 47.1
Zm00001eb084040 Zea mays HOM05D003360 ORTHO05D003759 4.7e-06 54.3 32 81.2
MBI01_g47405_MAGBIO Magnolia biondii HOM05D003360 ORTHO05D003759 8.1e-06 53.5 74 44.6


User provided reference genes

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