Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G222200 Phaseolus vulgaris HOM05D005095 ORTHO05D006156 3.9e-187 657.9 313 100.0
VMungo0720G2061 Vigna mungo HOM05D005095 ORTHO05D006156 2.3e-171 605.5 314 91.4
Glyma.U031320 Glycine max HOM05D005095 ORTHO05D006156 1.6e-156 556.2 308 84.7
Lj5g0003292 Lotus japonicus HOM05D005095 ORTHO05D006156 1.8e-155 552.7 310 81.0
TPR.G5702 Trifolium pratense HOM05D005095 ORTHO05D006156 1.9e-149 532.7 314 78.0
Ca_11632_v3 Cicer arietinum L. HOM05D005095 ORTHO05D006156 6.0e-148 527.7 314 77.4
Medtr1g060860 Medicago truncatula HOM05D005095 ORTHO05D006156 4.3e-146 521.5 307 76.9
Psat6g080360 Pisum sativum HOM05D005095 ORTHO05D006156 2.6e-143 512.3 308 76.0
Lalb_Chr21g0315581 Lupinus albus HOM05D005095 ORTHO05D006156 1.1e-141 506.9 311 74.9
MD12G1020700 Malus domestica HOM05D005095 ORTHO05D006156 1.4e-141 506.5 310 74.8
Actinidia05448 Actinidia chinensis HOM05D005095 ORTHO05D006156 3.5e-140 501.9 309 75.4
CSS0041742 Camellia sinensis var. sinensis HOM05D005095 ORTHO05D006156 1.8e-139 499.6 307 75.9
Dinv21237 Davidia involucrata HOM05D005095 ORTHO05D006156 2.3e-139 499.2 314 73.9
arahy.Tifrunner.gnm1.ann1.133YU3 Arachis hypogaea HOM05D005095 ORTHO05D006156 3.0e-139 498.8 303 74.3
arahy.Tifrunner.gnm1.ann1.ARK388 Arachis hypogaea HOM05D005095 ORTHO05D006156 3.0e-139 498.8 303 74.3
Rhsim03G0078800 Rhododendron simsii HOM05D005095 ORTHO05D006156 4.3e-138 495.0 311 74.6
Prupe.7G115300 Prunus persica HOM05D005095 ORTHO05D006156 2.2e-137 492.7 307 72.6
Sed0002679 Sechium edule HOM05D005095 ORTHO05D006156 2.2e-137 492.7 309 73.5
CANSAT51G0008 Cannabis sativa HOM05D005095 ORTHO05D006156 3.7e-137 491.9 302 73.8
CANSAT51G0010 Cannabis sativa HOM05D005095 ORTHO05D006156 3.7e-137 491.9 302 73.8
CANSAT51G0015 Cannabis sativa HOM05D005095 ORTHO05D006156 3.7e-137 491.9 302 73.8
PGR004G0044 Punica granatum HOM05D005095 ORTHO05D006156 8.2e-137 490.7 306 72.2
Manes.08G022501 Manihot esculenta HOM05D005095 ORTHO05D006156 1.8e-136 489.6 307 73.9
CsaV3_3G036990 Cucumis sativus L. HOM05D005095 ORTHO05D006156 2.4e-136 489.2 302 73.5
QL07p039953 Quercus lobata HOM05D005095 ORTHO05D006156 3.1e-136 488.8 312 71.8
Nn6g35006 Nelumbo nucifera HOM05D005095 ORTHO05D006156 4.1e-136 488.4 300 73.3
AUR62033539 Chenopodium quinoa HOM05D005095 ORTHO05D006156 9.0e-136 487.3 308 71.4
Atru.chr8.1610 Acer truncatum HOM05D005095 ORTHO05D006156 1.5e-135 486.5 309 71.8
MELO3C009446.2 Cucumis melo HOM05D005095 ORTHO05D006156 2.6e-135 485.7 308 72.1
RcHm_v2.0_Chr3g0472431 Rosa chinensis HOM05D005095 ORTHO05D006156 1.0e-134 483.8 311 71.7
TWI74G0549 Tripterygium wilfordii HOM05D005095 ORTHO05D006156 1.3e-134 483.4 314 70.1
Cfa016561 Carpinus fangiana HOM05D005095 ORTHO05D006156 2.9e-134 482.3 311 72.0
CiPaw.10G006700 Carya illinoinensis HOM05D005095 ORTHO05D006156 2.9e-134 482.3 307 73.6
Lj2A132T56 Lonicera japonica HOM05D005095 ORTHO05D006156 5.0e-134 481.5 304 72.7
Potri.002G156500 Populus trichocarpa HOM05D005095 ORTHO05D006156 8.5e-134 480.7 307 70.7
Cpa.g.sc5.61 Carica papaya HOM05D005095 ORTHO05D006156 2.5e-133 479.2 310 72.3
FAN14G2314 Fragaria x ananassa HOM05D005095 ORTHO05D006156 2.5e-133 479.2 311 71.1
Sopen09g003900 Solanum pennellii HOM05D005095 ORTHO05D006156 4.2e-133 478.4 307 70.4
PGSC0003DMG400002713 Solanum tuberosum HOM05D005095 ORTHO05D006156 4.2e-133 478.4 311 70.7
Potri.002G156200 Populus trichocarpa HOM05D005095 ORTHO05D006156 9.4e-133 477.2 307 70.4
THA.LOC104816365 Tarenaya hassleriana HOM05D005095 ORTHO05D006156 9.4e-133 477.2 303 71.3
Nitab4.5_0009950g0030 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.2e-132 476.9 310 70.3
ClCG10G019200 Citrullus lanatus HOM05D005095 ORTHO05D006156 2.1e-132 476.1 312 70.5
RcHm_v2.0_Chr3g0472441 Rosa chinensis HOM05D005095 ORTHO05D006156 4.6e-132 474.9 311 71.7
HanXRQChr14g0432521 Helianthus annuus HOM05D005095 ORTHO05D006156 1.0e-131 473.8 300 71.3
CAN.G824.21 Capsicum annuum HOM05D005095 ORTHO05D006156 1.4e-131 473.4 311 70.7
Sabra02G0124100 Salix brachista HOM05D005095 ORTHO05D006156 1.8e-131 473.0 332 65.1
MSTRG.19241 Avicennia marina HOM05D005095 ORTHO05D006156 8.8e-131 470.7 307 71.3
ECA238G3195 Erigeron canadensis HOM05D005095 ORTHO05D006156 8.8e-131 470.7 313 68.4
FAN09G4215 Fragaria x ananassa HOM05D005095 ORTHO05D006156 1.5e-130 469.9 311 70.1
Lsat_1_v5_gn_2_22640 Lactuca sativa HOM05D005095 ORTHO05D006156 4.3e-130 468.4 300 70.3
Peaxi162Scf00820g00056 Petunia axillaris HOM05D005095 ORTHO05D006156 5.7e-130 468.0 307 69.1
Ciclev10012289m.g Citrus clementina HOM05D005095 ORTHO05D006156 9.7e-130 467.2 304 69.7
MD14G1018000 Malus domestica HOM05D005095 ORTHO05D006156 9.7e-130 467.2 336 65.8
Oeu018347.1 Olea europaea HOM05D005095 ORTHO05D006156 9.7e-130 467.2 309 68.6
C05p58070 Brassica napus HOM05D005095 ORTHO05D006156 3.7e-129 465.3 302 70.2
AL3G21250 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 8.2e-129 464.2 307 69.1
AT3G09970 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 8.2e-129 464.2 307 69.1
Sp3g08310 Schrenkiella parvula HOM05D005095 ORTHO05D006156 8.2e-129 464.2 302 69.5
vmacro07384 Vaccinium macrocarpon HOM05D005095 ORTHO05D006156 8.2e-129 464.2 310 71.6
PSO339G4586 Papaver somniferum HOM05D005095 ORTHO05D006156 1.1e-128 463.8 302 69.9
A05p39050 Brassica napus HOM05D005095 ORTHO05D006156 2.4e-128 462.6 302 69.9
BraA05t22697Z Brassica rapa HOM05D005095 ORTHO05D006156 2.4e-128 462.6 302 69.9
Thhalv10021191m.g Eutrema salsugineum HOM05D005095 ORTHO05D006156 2.4e-128 462.6 302 68.9
MBI01_g08270_MAGBIO Magnolia biondii HOM05D005095 ORTHO05D006156 3.1e-128 462.2 307 68.1
BolC5t34464H Brassica oleracea HOM05D005095 ORTHO05D006156 4.1e-128 461.8 302 69.5
PSO384G1693 Papaver somniferum HOM05D005095 ORTHO05D006156 6.9e-128 461.1 302 69.2
CARHR084480 Cardamine hirsuta HOM05D005095 ORTHO05D006156 2.0e-127 459.5 302 68.2
Thecc.05G083800 Theobroma cacao HOM05D005095 ORTHO05D006156 4.5e-127 458.4 305 70.5
Manes.08G022601 Manihot esculenta HOM05D005095 ORTHO05D006156 7.7e-127 457.6 314 67.8
TAR623G0504 Trochodendron aralioides HOM05D005095 ORTHO05D006156 1.0e-126 457.2 290 72.4
SGA_v2.0_scaffold13G06769 Striga asiatica HOM05D005095 ORTHO05D006156 1.7e-126 456.4 303 70.0
Aqoxy4G02848 Aquilegia oxysepala HOM05D005095 ORTHO05D006156 3.8e-126 455.3 300 69.0
SalBow3G2853 Salvia bowleyana HOM05D005095 ORTHO05D006156 5.5e-125 451.4 301 69.1
unitig_578.g15761 Utricularia gibba HOM05D000146 ORTHO05D006156 9.4e-125 450.7 305 68.2
Aa31LG3G2470 Aethionema arabicum HOM05D005095 ORTHO05D006156 2.7e-124 449.1 302 66.9
Nitab4.5_0008581g0020 Nicotiana tabacum HOM05D005095 ORTHO05D006156 4.7e-124 448.4 310 67.7
TAR369G0658 Trochodendron aralioides HOM05D005095 ORTHO05D006156 4.7e-124 448.4 305 69.2
DCAR_007746 Daucus carota HOM05D005095 ORTHO05D006156 1.8e-123 446.4 305 67.5
CARHR084470 Cardamine hirsuta HOM05D005095 ORTHO05D006156 5.1e-123 444.9 302 67.2
Gohir.A04G065328 Gossypium hirsutum HOM05D005095 ORTHO05D006156 6.7e-123 444.5 305 68.5
Gorai.009G406100 Gossypium raimondii HOM05D005095 ORTHO05D006156 1.1e-122 443.7 305 69.2
Eucgr.A01531 Eucalyptus grandis HOM05D005095 ORTHO05D006156 2.6e-122 442.6 301 67.8
Thecc.05G084100 Theobroma cacao HOM05D005095 ORTHO05D006156 3.3e-122 442.2 305 68.2
Gohir.D04G102800 Gossypium hirsutum HOM05D005095 ORTHO05D006156 4.4e-122 441.8 305 68.9
COL.COLO4_29793 Corchorus olitorius HOM05D005095 ORTHO05D006156 7.4e-122 441.0 305 69.2
Migut.J00973 Erythranthe guttata HOM05D005095 ORTHO05D006156 1.3e-121 440.3 303 67.0
EL10Ac7g16967 Beta vulgaris HOM05D005095 ORTHO05D006156 3.7e-121 438.7 300 66.3
Duzib093G0109 Durio zibethinus HOM05D005095 ORTHO05D006156 3.7e-121 438.7 302 68.5
AT3G09960 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 2.4e-120 436.0 303 66.0
Nitab4.5_0004686g0040 Nicotiana tabacum HOM05D005095 ORTHO05D006156 2.4e-120 436.0 354 59.9
Zm00001eb421860 Zea mays HOM05D005095 ORTHO05D006156 4.1e-120 435.3 305 64.9
BcaC05g29724 Brassica carinata HOM05D005095 ORTHO05D006156 1.3e-118 430.3 301 65.4
Nitab4.5_0004686g0050 Nicotiana tabacum HOM05D005095 ORTHO05D006156 3.8e-118 428.7 310 65.2
Os04g0409500 Oryza sativa ssp. japonica HOM05D005095 ORTHO05D006156 1.9e-117 426.4 300 63.0
ATR0820G022 Amborella trichopoda HOM05D005095 ORTHO05D006156 2.7e-116 422.5 311 63.3
C05p58080 Brassica napus HOM05D005095 ORTHO05D006156 3.3e-114 415.6 309 60.5
Gorai.009G405800 Gossypium raimondii HOM05D005095 ORTHO05D006156 7.4e-114 414.5 308 64.3
Ah.06g189990 Amaranthus hybridus HOM05D005095 ORTHO05D006156 6.3e-113 411.4 301 62.5
Carub.0003s0907 Capsella rubella HOM05D005095 ORTHO05D006156 2.0e-111 406.4 291 65.6
MELO3C009819.2 Cucumis melo HOM05D005095 ORTHO05D006156 2.9e-110 402.5 310 61.0
DCAR_013371 Daucus carota HOM05D005095 ORTHO05D006156 2.5e-109 399.4 321 59.8
CsaV3_3G040830 Cucumis sativus L. HOM05D005095 ORTHO05D006156 7.2e-109 397.9 311 60.5
DCAR_013370 Daucus carota HOM05D005095 ORTHO05D006156 1.8e-107 393.3 307 61.6
SEGI_28091 Sequoiadendron giganteum HOM05D005095 ORTHO05D006156 2.3e-107 392.9 302 60.9
FvH4_6g18140 Fragaria vesca HOM05D005095 ORTHO05D006156 2.6e-106 389.4 254 70.1
Sc02g0001070 Simmondsia chinensis HOM05D005095 ORTHO05D006156 2.6e-106 389.4 259 70.3
ECA238G1993 Erigeron canadensis HOM05D005095 ORTHO05D006156 2.8e-105 386.0 304 61.2
Nn6g35008 Nelumbo nucifera HOM05D005095 ORTHO05D006156 1.8e-104 383.3 300 61.0
Ah.06g189980 Amaranthus hybridus HOM05D005095 ORTHO05D006156 2.7e-100 369.4 300 57.7
DCAR_013372 Daucus carota HOM05D005095 ORTHO05D006156 1.8e-99 366.7 312 58.0
Pp3c12_22780 Physcomitrium patens HOM05D005095 ORTHO05D006156 2.0e-98 363.2 301 55.8
AagrBONN_evm.TU.Sc2ySwM_117.2042 Anthoceros agrestis HOM05D005095 ORTHO05D006156 8.3e-97 357.8 300 56.7
Sed0010579 Sechium edule HOM05D005095 ORTHO05D006156 9.5e-93 344.4 250 62.4
BcaC05g29723 Brassica carinata HOM05D005095 ORTHO05D006156 2.8e-92 342.8 307 52.8
BolC5t34465H Brassica oleracea HOM05D005095 ORTHO05D006156 2.8e-92 342.8 252 60.3
SMO352G0026 Selaginella moellendorffii HOM05D005095 ORTHO05D006156 4.5e-87 325.5 304 52.3
Mapoly0100s0026 Marchantia polymorpha HOM05D005095 ORTHO05D006156 1.7e-86 323.6 301 52.2
AL3G21240 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 1.1e-85 320.9 305 53.4
Duzib093G0628 Durio zibethinus HOM05D005095 ORTHO05D006156 1.2e-84 317.4 325 52.6
CBR_g20302 Chara braunii HOM05D005095 ORTHO05D006156 3.6e-84 315.8 305 49.5
Solyc09g009170.4 Solanum lycopersicum HOM05D005095 ORTHO05D006156 1.7e-81 307.0 200 71.5
Gohir.A04G062650 Gossypium hirsutum HOM05D005095 ORTHO05D006156 1.9e-77 293.5 219 62.1
Gohir.D04G102500 Gossypium hirsutum HOM05D005095 ORTHO05D006156 7.3e-77 291.6 233 61.8
GSVIVG01033803001 Vitis vinifera HOM05D005095 ORTHO05D006156 7.3e-77 291.6 185 76.8
Cc06_g05420 Coffea canephora HOM05D005095 ORTHO05D006156 1.2e-74 284.3 185 71.9
Medtr1g060850 Medicago truncatula HOM05D005095 ORTHO05D006156 2.4e-72 276.6 165 73.3
CDE02G4719 Ceratophyllum demersum HOM05D005095 ORTHO05D006156 1.8e-67 260.4 177 66.1
CAN.G397.3 Capsicum annuum HOM05D005095 ORTHO05D006156 4.6e-63 245.7 190 61.1
Glyma.10G067302 Glycine max HOM05D005095 ORTHO05D006156 4.6e-63 245.7 135 88.1
BcaC05g29512 Brassica carinata HOM05D005095 ORTHO05D006156 4.3e-61 239.2 169 61.5
MD14G1017800 Malus domestica HOM05D005095 ORTHO05D006156 2.0e-50 203.8 143 66.4
Haze_19563 Corylus avellana HOM05D000103 ORTHO05D000049 1.7e-49 200.7 136 64.0
MCO16G241 Micromonas commoda HOM05D005095 ORTHO05D006156 2.1e-44 183.7 282 41.1
Sabra02G0123600 Salix brachista HOM05D005095 ORTHO05D006156 3.6e-44 183.0 172 55.8
AL7G30480 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 2.6e-42 176.8 114 67.5
VMungo0720G1002 Vigna mungo HOM05D005095 ORTHO05D006156 7.6e-42 175.3 90 90.0
Zm00001eb312570 Zea mays HOM05D005095 ORTHO05D006156 6.4e-41 172.2 122 61.5
HPP92_007823 Vanilla planifolia HOM05D005095 ORTHO05D006156 1.1e-37 161.4 125 63.2
Hund04015 Selenicereus undatus HOM05D005095 ORTHO05D006156 1.3e-36 157.9 113 63.7
BcaB02g09662 Brassica carinata HOM05D005095 ORTHO05D006156 1.5e-29 134.4 159 47.2
Nn6g35009 Nelumbo nucifera HOM05D005095 ORTHO05D006156 1.2e-26 124.8 116 56.9
Zm00001eb198060 Zea mays HOM05D005095 ORTHO05D006156 1.6e-20 104.4 63 73.0
Prupe.3G199100 Prunus persica HOM05D005095 ORTHO05D006156 1.1e-19 101.7 62 71.0
TAR628G0764 Trochodendron aralioides HOM05D005095 ORTHO05D006156 1.7e-17 94.4 66 59.1
Sabra14G0058200 Salix brachista HOM05D005095 ORTHO05D006156 1.4e-11 74.7 95 49.5
MD04G1094600 Malus domestica HOM05D005095 ORTHO05D245281 4.1e-11 73.2 69 53.6
Pp3c4_390 Physcomitrium patens HOM05D005095 ORTHO05D006156 1.7e-09 67.8 50 58.0
BcaC06g33893 Brassica carinata HOM05D005095 ORTHO05D092937 8.8e-06 55.5 44 54.5


User provided reference genes

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