Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 8.7e-179 630.2 314 100.0
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 2.9e-166 588.6 314 93.3
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 2.3e-147 525.8 310 84.2
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 5.3e-136 488.0 306 78.4
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 9.1e-136 487.3 311 76.8
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 1.2e-135 486.9 315 74.6
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 3.4e-135 485.3 312 76.9
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.9e-134 482.3 314 74.8
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 6.5e-134 481.1 312 76.9
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 1.1e-133 480.3 308 76.0
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 2.5e-133 479.2 304 77.0
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.8e-131 473.0 315 74.0
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 3.9e-131 471.9 316 71.2
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 3.1e-128 462.2 313 71.9
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 1.2e-127 460.3 310 70.0
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.5e-127 459.9 317 69.1
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.0e-127 459.5 315 70.2
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 3.5e-127 458.8 310 70.0
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 4.5e-127 458.4 310 70.0
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 4.5e-127 458.4 314 70.7
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 1.0e-126 457.2 317 69.7
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 1.3e-126 456.8 308 71.1
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 1.7e-126 456.4 317 69.1
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 3.8e-126 455.3 312 69.9
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 6.5e-126 454.5 307 71.3
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 8.5e-126 454.1 312 70.5
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 1.5e-125 453.4 322 67.4
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.2e-125 452.2 321 70.4
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 7.2e-125 451.1 313 71.6
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 9.4e-125 450.7 314 68.5
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 9.4e-125 450.7 327 67.3
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 9.4e-125 450.7 304 72.4
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 1.6e-124 449.9 309 69.3
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 2.7e-124 449.1 311 69.8
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 8.0e-124 447.6 321 67.9
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 8.0e-124 447.6 321 67.9
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 6.7e-123 444.5 317 68.5
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 8.8e-123 444.1 301 70.8
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 8.8e-123 444.1 321 67.6
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 1.5e-122 443.4 319 68.3
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 2.6e-122 442.6 317 68.8
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.6e-122 442.6 318 68.2
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 3.3e-122 442.2 308 69.2
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 4.4e-122 441.8 318 66.4
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 4.4e-122 441.8 320 67.5
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 7.5e-122 441.0 318 68.2
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.7e-121 439.9 297 71.4
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 3.7e-121 438.7 296 72.0
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 4.8e-121 438.3 309 68.9
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 6.3e-121 438.0 314 68.5
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 6.3e-121 438.0 314 67.8
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 1.1e-120 437.2 305 67.9
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.4e-120 436.8 318 67.6
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 1.4e-120 436.8 314 67.2
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 1.4e-120 436.8 312 67.9
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 1.8e-120 436.4 316 67.4
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 4.1e-120 435.3 309 68.6
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 9.1e-120 434.1 310 67.7
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 9.1e-120 434.1 310 66.5
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 2.0e-119 433.0 308 66.9
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 3.5e-119 432.2 306 68.3
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 7.7e-119 431.0 312 67.3
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 1.0e-118 430.6 302 69.2
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.9e-118 429.1 302 68.9
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 8.5e-118 427.6 311 67.2
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 8.5e-118 427.6 312 67.6
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.1e-117 427.2 302 68.5
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 5.5e-117 424.9 317 66.2
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 5.5e-117 424.9 317 65.9
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 1.6e-116 423.3 313 66.8
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 2.7e-116 422.5 318 65.4
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 2.7e-116 422.5 315 66.0
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 3.6e-116 422.2 310 66.5
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 4.7e-116 421.8 302 67.5
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 6.1e-116 421.4 317 65.6
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 8.0e-116 421.0 308 64.9
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 1.0e-115 420.6 314 66.2
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 2.3e-115 419.5 307 65.8
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 8.8e-115 417.5 308 64.6
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 4.4e-114 415.2 310 64.8
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 4.4e-114 415.2 317 65.3
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 1.1e-112 410.6 339 59.9
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 2.4e-112 409.5 336 61.9
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 2.0e-111 406.4 305 65.9
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 2.7e-111 406.0 319 63.0
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 1.7e-110 403.3 310 63.2
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 2.9e-110 402.5 313 64.2
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 6.1e-108 394.8 312 63.1
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 8.0e-108 394.4 323 61.0
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 2.6e-106 389.4 282 66.3
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 2.6e-106 389.4 306 64.4
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 5.4e-104 381.7 312 62.2
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 2.0e-103 379.8 330 56.7
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 8.6e-102 374.4 279 67.0
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 8.9e-99 364.4 274 66.8
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.3e-97 360.5 377 51.7
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 4.6e-95 352.1 307 57.7
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 1.5e-93 347.1 301 55.8
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 2.1e-92 343.2 295 58.3
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.2e-90 337.4 300 54.7
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 2.0e-90 336.7 308 55.8
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 5.8e-90 335.1 229 71.6
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.9e-88 330.1 301 54.8
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 5.4e-88 328.6 227 69.2
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 6.0e-87 325.1 274 59.9
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 6.8e-83 311.6 231 66.2
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 3.5e-79 299.3 352 47.2
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.7e-73 280.4 235 60.9
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 3.2e-72 276.2 337 46.6
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 2.3e-70 270.0 175 73.7
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.9e-70 269.2 204 67.2
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.5e-69 266.5 197 64.0
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 4.6e-63 245.7 187 63.6
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.3e-52 211.1 230 53.5
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 6.9e-51 205.3 207 52.2
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 2.0e-50 203.8 307 45.0
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 6.7e-46 188.7 151 59.6
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.1e-44 183.7 188 54.8
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 2.8e-44 183.3 304 38.8
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.5e-42 177.6 161 55.9
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 1.9e-40 170.6 127 71.7
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 5.7e-37 159.1 107 67.3
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 7.4e-37 158.7 252 41.7
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 3.2e-32 143.3 124 58.1
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 3.6e-31 139.8 126 63.5
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 3.4e-26 123.2 89 69.7
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.4e-22 111.3 83 68.7
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 8.8e-22 108.6 164 41.5
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 1.1e-21 108.2 68 73.5
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 3.3e-21 106.7 82 63.4
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 4.8e-20 102.8 79 59.5
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 5.9e-18 95.9 110 46.4
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 7.7e-18 95.5 144 38.2
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 2.5e-16 90.5 70 67.1
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 2.1e-15 87.4 60 70.0
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 3.6e-15 86.7 61 68.9
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 6.1e-15 85.9 70 58.6
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 3.9e-14 83.2 117 41.9
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 6.7e-14 82.4 76 52.6
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 1.0e-09 68.6 50 66.0


User provided reference genes

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