Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 0.0e+00 1513.4 794 100.0
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 0.0e+00 1179.1 735 84.9
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 0.0e+00 1150.6 797 79.0
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 0.0e+00 1142.1 832 76.2
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 1.1e-265 920.2 817 65.5
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 2.6e-240 835.9 802 62.2
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 3.3e-235 818.9 767 64.3
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 1.2e-229 800.4 780 61.8
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 3.1e-217 759.2 788 60.3
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 2.5e-190 669.8 822 52.9
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 1.1e-142 511.5 631 52.3
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 7.6e-131 472.2 580 53.1
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 1.9e-121 441.0 817 39.5
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 7.4e-118 429.1 831 39.1
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 5.3e-116 422.9 772 40.8
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 1.3e-114 418.3 795 39.6
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 8.2e-109 399.1 821 38.6
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 1.1e-108 398.7 831 37.7
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 5.0e-106 389.8 829 37.2
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 2.5e-105 387.5 775 38.2
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 3.2e-105 387.1 808 37.0
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 3.2e-105 387.1 657 42.9
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 3.2e-105 387.1 821 37.8
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 4.2e-105 386.7 815 37.9
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.0e-103 382.1 880 35.5
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 7.4e-102 375.9 870 35.2
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 8.2e-101 372.5 802 37.8
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 1.5e-97 361.7 896 34.9
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 6.1e-96 356.3 896 34.8
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 1.1e-92 345.5 793 35.9
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 5.3e-92 343.2 811 35.4
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 2.0e-91 341.3 782 35.5
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 2.0e-91 341.3 804 36.6
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 3.0e-87 327.4 884 34.8
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.1e-84 318.9 804 35.8
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 1.8e-84 318.2 838 33.8
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 1.8e-84 318.2 830 34.6
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.6e-83 315.1 862 34.3
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 3.5e-83 313.9 801 35.1
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 4.5e-83 313.5 806 35.0
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 1.7e-82 311.6 803 34.9
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 9.5e-81 305.8 880 32.7
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.8e-79 301.6 870 32.3
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 4.0e-79 300.4 790 35.2
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 2.0e-78 298.1 934 32.7
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 7.5e-78 296.2 875 32.7
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 9.8e-78 295.8 874 31.9
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 4.9e-77 293.5 751 34.9
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.0e-74 285.8 816 33.8
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 5.0e-74 283.5 802 34.4
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 1.4e-71 275.4 209 76.1
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.2e-70 272.3 932 31.3
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 1.2e-70 272.3 920 31.7
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 2.3e-66 258.1 813 32.2
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 3.9e-66 257.3 814 30.5
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 1.9e-65 255.0 812 30.2
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 5.6e-65 253.4 815 32.8
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 9.5e-65 252.7 814 30.1
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 6.2e-64 250.0 761 32.3
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 6.2e-64 250.0 795 30.7
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 8.0e-64 249.6 821 30.2
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 1.1e-63 249.2 797 30.4
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 2.3e-63 248.1 962 30.7
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 5.8e-62 243.4 566 36.4
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 2.9e-61 241.1 800 30.1
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 8.3e-61 239.6 819 31.0
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 7.0e-60 236.5 822 30.2
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 1.6e-59 235.3 834 30.9
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 2.7e-59 234.6 825 31.5
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 1.0e-58 232.6 839 31.3
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 3.0e-58 231.1 822 31.8
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 1.1e-57 229.2 853 30.4
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 4.3e-57 227.3 957 27.9
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 9.5e-57 226.1 835 30.2
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 2.8e-56 224.6 806 31.3
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 1.4e-55 222.2 908 29.8
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.5e-54 218.8 838 29.8
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 2.6e-54 218.0 581 34.8
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 1.9e-52 211.8 832 30.0
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 2.4e-52 211.5 841 29.4
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 3.2e-52 211.1 576 34.2
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 7.1e-52 209.9 776 30.9
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 2.1e-51 208.4 713 31.3
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 3.5e-51 207.6 826 28.0
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 2.3e-50 204.9 624 31.7
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 2.5e-49 201.4 745 29.3
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 1.6e-48 198.7 790 29.1
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 2.8e-48 198.0 809 28.7
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 1.1e-44 186.0 221 49.8
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 7.1e-44 183.3 802 29.6
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 7.8e-43 179.9 831 29.1
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 1.3e-42 179.1 778 30.1
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.5e-41 175.6 660 30.2
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.9e-41 175.3 609 30.4
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 1.2e-40 172.6 889 26.8
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 6.2e-40 170.2 905 26.6
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.8e-39 168.7 783 29.1
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 2.0e-38 165.2 827 27.6
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.2e-35 156.0 129 62.0
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 5.1e-34 150.6 810 28.0
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 8.7e-34 149.8 856 25.5
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 4.0e-31 141.0 140 54.3
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 1.7e-29 135.6 457 31.1
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 2.9e-29 134.8 168 45.2
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.4e-28 132.5 615 28.0
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 1.4e-28 132.5 107 65.4
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 1.2e-27 129.4 659 26.7
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 1.0e-26 126.3 486 30.2
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.9e-25 122.1 99 64.6
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 7.4e-25 120.2 714 26.2
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 2.1e-24 118.6 353 31.4
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 8.1e-24 116.7 879 25.3
VMungo0251G2966 Vigna mungo HOM05D005434 ORTHO05D006412 8.1e-24 116.7 282 35.8
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 2.7e-19 101.7 171 39.2
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 1.3e-18 99.4 233 33.5
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 2.9e-13 81.6 80 52.5
FAN12G4172 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.1e-09 69.7 171 34.5
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 4.3e-09 67.8 76 48.7
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 4.3e-09 67.8 142 31.0
Sc17g0000060 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.6e-08 65.9 527 23.3
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 6.3e-08 63.9 139 31.7
AagrBONN_evm.TU.Sc2ySwM_344.3613 Anthoceros agrestis HOM05D022252 ORTHO05D006412 3.1e-07 61.6 174 25.3
Mapoly0021s0152 Marchantia polymorpha HOM05D022252 ORTHO05D006412 2.0e-06 58.9 166 23.5
Actinidia21335 Actinidia chinensis HOM05D005434 ORTHO05D006412 3.4e-06 58.2 118 37.3
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 5.9e-06 57.4 67 41.8


User provided reference genes

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