Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G204500 Phaseolus vulgaris HOM05D003412 ORTHO05D003962 7.6e-139 497.3 274 100.0
VMungo0720G0630 Vigna mungo HOM05D003412 ORTHO05D003962 3.1e-132 475.3 274 95.3
Glyma.10G144000 Glycine max HOM05D003412 ORTHO05D003962 5.5e-121 438.0 274 87.6
TPR.G2623 Trifolium pratense HOM05D003412 ORTHO05D003962 1.9e-113 412.9 274 82.8
Thecc.05G329000 Theobroma cacao HOM05D003412 ORTHO05D003962 2.8e-109 399.1 274 81.8
Glyma.20G092900 Glycine max HOM05D003412 ORTHO05D003962 3.7e-109 398.7 274 81.8
Lj5g0005042 Lotus japonicus HOM05D003412 ORTHO05D003962 1.2e-107 393.7 274 79.9
Lalb_Chr06g0167331 Lupinus albus HOM05D003412 ORTHO05D003962 1.2e-107 393.7 274 79.6
CiPaw.07G035400 Carya illinoinensis HOM05D003412 ORTHO05D003962 3.5e-107 392.1 274 79.9
Cpa.g.sc48.220 Carica papaya HOM05D003412 ORTHO05D003962 5.9e-107 391.3 274 79.6
Sabra13G0002900 Salix brachista HOM05D003412 ORTHO05D003962 5.9e-107 391.3 274 78.5
Duzib128G1566 Durio zibethinus HOM05D003412 ORTHO05D003962 1.3e-106 390.2 274 79.9
Duzib177G0752 Durio zibethinus HOM05D003412 ORTHO05D003962 1.5e-105 386.7 274 78.8
arahy.Tifrunner.gnm1.ann1.WSUD3I Arachis hypogaea HOM05D003412 ORTHO05D003962 1.9e-105 386.3 276 79.3
CAN.G1248.24 Capsicum annuum HOM05D003412 ORTHO05D003962 9.4e-105 384.0 275 78.2
PGSC0003DMG400018247 Solanum tuberosum HOM05D003412 ORTHO05D003962 1.2e-104 383.6 274 76.6
Atru.chr12.1551 Acer truncatum HOM05D003412 ORTHO05D003962 6.1e-104 381.3 274 78.1
Prupe.6G305600 Prunus persica HOM05D003412 ORTHO05D003962 8.0e-104 380.9 275 78.2
GSVIVG01031318001 Vitis vinifera HOM05D003412 ORTHO05D003962 6.8e-103 377.9 274 78.1
Sopen01g044580 Solanum pennellii HOM05D003412 ORTHO05D003962 8.8e-103 377.5 274 75.9
Gohir.D13G116700 Gossypium hirsutum HOM05D003412 ORTHO05D003962 1.2e-102 377.1 274 78.1
Gorai.013G131200 Gossypium raimondii HOM05D003412 ORTHO05D003962 1.2e-102 377.1 274 78.1
arahy.Tifrunner.gnm1.ann1.LCTE14 Arachis hypogaea HOM05D003412 ORTHO05D003962 2.6e-102 375.9 276 77.9
Lj5A319T47 Lonicera japonica HOM05D003412 ORTHO05D003962 2.2e-101 372.9 275 76.4
CiPaw.08G150800 Carya illinoinensis HOM05D003412 ORTHO05D003962 3.7e-101 372.1 274 76.3
MELO3C004154.2 Cucumis melo HOM05D003412 ORTHO05D003962 3.7e-101 372.1 274 76.3
Eucgr.H01317 Eucalyptus grandis HOM05D003412 ORTHO05D003962 8.3e-101 370.9 275 75.6
Gohir.A13G113600 Gossypium hirsutum HOM05D003412 ORTHO05D003962 8.3e-101 370.9 274 77.0
Hma1.2p1_3304F.1_g335080 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 1.4e-100 370.2 274 75.2
CsaV3_2G007300 Cucumis sativus L. HOM05D003412 ORTHO05D003962 2.4e-100 369.4 267 77.2
Actinidia16911 Actinidia chinensis HOM05D003412 ORTHO05D003962 7.0e-100 367.9 274 73.7
Rhsim11G0101900 Rhododendron simsii HOM05D003412 ORTHO05D003962 7.0e-100 367.9 273 74.7
RcHm_v2.0_Chr3g0458381 Rosa chinensis HOM05D003412 ORTHO05D003962 2.7e-99 365.9 275 74.9
Solyc01g101130.3 Solanum lycopersicum HOM05D003412 ORTHO05D003962 3.5e-99 365.5 274 75.2
Nn4g25397 Nelumbo nucifera HOM05D003412 ORTHO05D003962 1.3e-98 363.6 274 75.2
Hma1.2p1_0052F.1_g030415 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 6.5e-98 361.3 282 73.0
Sc16g0009380 Simmondsia chinensis HOM05D003412 ORTHO05D003962 7.2e-97 357.8 274 72.6
FAN09G0161 Fragaria x ananassa HOM05D003412 ORTHO05D003962 9.5e-97 357.5 274 73.0
Cc02_g35780 Coffea canephora HOM05D003412 ORTHO05D003962 1.6e-96 356.7 274 73.7
Oeu036644.1 Olea europaea HOM05D003412 ORTHO05D003962 6.1e-96 354.8 274 71.5
Nitab4.5_0001931g0010 Nicotiana tabacum HOM05D003412 ORTHO05D003962 8.0e-96 354.4 296 70.3
Carub.0006s2442 Capsella rubella HOM05D003412 ORTHO05D003962 1.0e-95 354.0 274 70.4
PGR083G2508 Punica granatum HOM05D003412 ORTHO05D003962 1.0e-95 354.0 274 73.0
MSTRG.5167 Avicennia marina HOM05D003412 ORTHO05D003962 1.4e-95 353.6 273 72.9
CANSAT54G2189 Cannabis sativa HOM05D003412 ORTHO05D003962 2.3e-95 352.8 283 70.3
Nitab4.5_0014791g0020 Nicotiana tabacum HOM05D003412 ORTHO05D003962 2.3e-95 352.8 292 71.6
PSO210G2054 Papaver somniferum HOM05D003412 ORTHO05D003962 5.2e-95 351.7 274 71.2
Peaxi162Scf00357g00017 Petunia axillaris HOM05D003412 ORTHO05D003962 5.2e-95 351.7 291 69.8
PSO761G0645 Papaver somniferum HOM05D003412 ORTHO05D003962 8.8e-95 350.9 274 71.2
Ciclev10012076m.g Citrus clementina HOM05D003412 ORTHO05D003962 2.0e-94 349.7 274 73.4
MSTRG.27914 Avicennia marina HOM05D003412 ORTHO05D003962 2.6e-94 349.4 274 71.2
COL.COLO4_05512 Corchorus olitorius HOM05D003412 ORTHO05D003962 3.4e-94 349.0 274 73.4
DCAR_025305 Daucus carota HOM05D003412 ORTHO05D003962 3.4e-94 349.0 274 70.4
Nn3g21904 Nelumbo nucifera HOM05D003412 ORTHO05D003962 5.7e-94 348.2 274 70.4
Oeu000100.1 Olea europaea HOM05D003412 ORTHO05D003962 5.7e-94 348.2 274 70.8
Haze_03996 Corylus avellana HOM05D003412 ORTHO05D003962 9.8e-94 347.4 274 71.2
Lalb_Chr21g0310081 Lupinus albus HOM05D003412 ORTHO05D003962 1.7e-93 346.7 274 73.4
THA.LOC104818749 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 4.9e-93 345.1 275 69.8
vmacro01603 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 1.4e-92 343.6 274 69.0
MD12G1200500 Malus domestica HOM05D003412 ORTHO05D003962 2.4e-92 342.8 274 71.5
SalBow1G0001 Salvia bowleyana HOM05D003412 ORTHO05D003962 3.1e-92 342.4 273 70.3
MSTRG.16423 Avicennia marina HOM05D003412 ORTHO05D003962 1.6e-91 340.1 274 70.4
EL10Ac4g09549 Beta vulgaris HOM05D003412 ORTHO05D003962 4.5e-91 338.6 274 69.0
Rhsim05G0121800 Rhododendron simsii HOM05D003412 ORTHO05D003962 7.8e-91 337.8 274 69.0
MD04G1187100 Malus domestica HOM05D003412 ORTHO05D003962 8.6e-90 334.3 274 70.1
ClCG02G014670 Citrullus lanatus HOM05D003412 ORTHO05D003962 1.1e-89 334.0 274 70.1
Oeu061921.1 Olea europaea HOM05D003412 ORTHO05D003962 2.5e-89 332.8 274 70.1
Ah.06g190650 Amaranthus hybridus HOM05D003412 ORTHO05D003962 2.1e-88 329.7 261 70.1
Sabra05G0015000 Salix brachista HOM05D003412 ORTHO05D003962 3.6e-88 328.9 274 67.9
FAN14G3569 Fragaria x ananassa HOM05D003412 ORTHO05D003962 6.1e-88 328.2 274 69.3
Eucgr.B01817 Eucalyptus grandis HOM05D003412 ORTHO05D003962 4.0e-87 325.5 274 66.4
Sed0023403 Sechium edule HOM05D003412 ORTHO05D003962 6.8e-87 324.7 274 67.9
FvH4_6g08410 Fragaria vesca HOM05D003412 ORTHO05D003962 1.5e-86 323.6 274 68.6
Hund07273 Selenicereus undatus HOM05D003412 ORTHO05D003962 7.5e-86 321.2 274 67.2
Lalb_Chr04g0260311 Lupinus albus HOM05D003412 ORTHO05D003962 4.1e-84 315.5 272 68.8
Os05g0135900 Oryza sativa ssp. japonica HOM05D003412 ORTHO05D003962 1.2e-83 313.9 274 64.2
SGA_v2.0_scaffold117G32404 Striga asiatica HOM05D003412 ORTHO05D003962 1.2e-83 313.9 275 65.8
GSVIVG01028212001 Vitis vinifera HOM05D003412 ORTHO05D003962 1.6e-83 313.5 274 64.2
HanXRQChr03g0088701 Helianthus annuus HOM05D003412 ORTHO05D003962 2.7e-83 312.8 231 73.6
Dinv24506 Davidia involucrata HOM05D003412 ORTHO05D003962 4.6e-83 312.0 276 67.8
Sabra05G0000900 Salix brachista HOM05D003412 ORTHO05D003962 4.6e-83 312.0 274 65.3
Aa31LG11G9870 Aethionema arabicum HOM05D003412 ORTHO05D003962 7.8e-83 311.2 274 63.1
Thhalv10008143m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 1.0e-82 310.8 275 63.6
AT5G26770 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 1.3e-82 310.5 297 61.6
CARHR009430 Cardamine hirsuta HOM05D003412 ORTHO05D003962 1.3e-82 310.5 275 63.6
AUR62000468 Chenopodium quinoa HOM05D003412 ORTHO05D003962 3.0e-82 309.3 274 65.3
Zm00001eb417390 Zea mays HOM05D003412 ORTHO05D003962 3.0e-82 309.3 276 64.1
AUR62006809 Chenopodium quinoa HOM05D003412 ORTHO05D003962 5.0e-82 308.5 274 65.3
Hund07277 Selenicereus undatus HOM05D003412 ORTHO05D003962 5.0e-82 308.5 274 65.3
Lsat_1_v5_gn_9_77100 Lactuca sativa HOM05D003412 ORTHO05D003962 6.6e-82 308.1 274 63.5
THA.LOC104821745 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 6.6e-82 308.1 326 56.4
DCAR_029287 Daucus carota HOM05D003412 ORTHO05D003962 2.5e-81 306.2 275 64.0
ECA236G3082 Erigeron canadensis HOM05D003412 ORTHO05D003962 2.5e-81 306.2 275 62.5
Lju99C6G3 Lonicera japonica HOM05D003412 ORTHO05D003962 2.8e-80 302.8 253 65.6
Migut.B00877 Erythranthe guttata HOM05D003412 ORTHO05D003962 3.6e-80 302.4 274 64.2
Sp1g08080 Schrenkiella parvula HOM05D003412 ORTHO05D003962 4.7e-80 302.0 275 62.2
SEGI_01307 Sequoiadendron giganteum HOM05D003412 ORTHO05D003962 8.0e-80 301.2 274 60.6
BcaNung03675 Brassica carinata HOM05D003412 ORTHO05D003962 2.3e-79 299.7 274 63.1
ATR0796G311 Amborella trichopoda HOM05D003412 ORTHO05D003962 8.9e-79 297.7 274 63.1
CARHR080290 Cardamine hirsuta HOM05D003412 ORTHO05D003962 1.2e-78 297.4 275 61.5
A06p37010 Brassica napus HOM05D003412 ORTHO05D003962 1.5e-78 297.0 274 63.5
Hund21837 Selenicereus undatus HOM05D003412 ORTHO05D003962 2.0e-78 296.6 246 66.7
Aqoxy2G02528 Aquilegia oxysepala HOM05D003412 ORTHO05D003962 2.6e-78 296.2 274 62.0
arahy.Tifrunner.gnm1.ann1.36CNLM Arachis hypogaea HOM05D003412 ORTHO05D003962 4.4e-78 295.4 274 62.4
Carub.0001s0882 Capsella rubella HOM05D003412 ORTHO05D003962 4.4e-78 295.4 275 61.8
vmacro19768 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 9.8e-78 294.3 274 62.4
Ca_10195_v3 Cicer arietinum L. HOM05D003412 ORTHO05D003962 4.9e-77 292.0 274 65.0
MBI19_g32732_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 4.9e-77 292.0 268 64.6
BcaC04g23636 Brassica carinata HOM05D003412 ORTHO05D003962 1.4e-76 290.4 274 63.1
MBI18_g09639_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 1.4e-76 290.4 274 62.8
Sed0017632 Sechium edule HOM05D003412 ORTHO05D003962 1.4e-76 290.4 274 62.4
arahy.Tifrunner.gnm1.ann1.D23GS1 Arachis hypogaea HOM05D003412 ORTHO05D003962 3.2e-76 289.3 274 60.9
BraA06t26626Z Brassica rapa HOM05D003412 ORTHO05D003962 2.7e-75 286.2 291 59.8
BcaNung03912 Brassica carinata HOM05D003412 ORTHO05D003962 1.0e-74 284.3 274 60.9
THA.LOC104816843 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 1.3e-74 283.9 274 58.8
TAR362G0077 Trochodendron aralioides HOM05D003412 ORTHO05D003962 3.9e-74 282.3 274 62.4
SGA_v2.0_scaffold279G46784 Striga asiatica HOM05D003412 ORTHO05D003962 5.0e-74 282.0 276 62.0
CDE08G0751 Ceratophyllum demersum HOM05D003412 ORTHO05D003962 1.5e-73 280.4 274 57.7
TAR365G0905 Trochodendron aralioides HOM05D003412 ORTHO05D003962 2.3e-71 273.1 261 62.8
Actinidia01664 Actinidia chinensis HOM05D003412 ORTHO05D003962 3.4e-70 269.2 274 59.5
BolC9t53547H Brassica oleracea HOM05D003412 ORTHO05D003962 9.9e-70 267.7 282 57.8
unitig_22.g5801 Utricularia gibba HOM05D003412 ORTHO05D003962 1.3e-69 267.3 275 57.5
HPP92_026058 Vanilla planifolia HOM05D003412 ORTHO05D003962 2.9e-69 266.2 274 57.7
AL1G19990 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 2.4e-68 263.1 225 65.3
Psat6g155400 Pisum sativum HOM05D003412 ORTHO05D003962 2.4e-68 263.1 274 60.6
C05p07470 Brassica napus HOM05D003412 ORTHO05D003962 4.1e-68 262.3 276 57.6
Zm00001eb354610 Zea mays HOM05D003412 ORTHO05D003962 3.5e-67 259.2 219 68.0
A06p06180 Brassica napus HOM05D003412 ORTHO05D003962 7.8e-67 258.1 275 56.7
Aa31LG1G5630 Aethionema arabicum HOM05D003412 ORTHO05D003962 1.0e-66 257.7 274 56.2
Lj9C230G11 Lonicera japonica HOM05D003412 ORTHO05D003962 2.3e-66 256.5 254 58.7
AT1G09470 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 1.1e-65 254.2 238 60.9
BraA06t23830Z Brassica rapa HOM05D003412 ORTHO05D003962 2.5e-65 253.1 275 56.0
TWI56G0029 Tripterygium wilfordii HOM05D003412 ORTHO05D003962 4.3e-65 252.3 274 58.0
BraA09t36208Z Brassica rapa HOM05D003412 ORTHO05D003962 3.6e-64 249.2 285 54.7
Medtr1g484830 Medicago truncatula HOM05D003412 ORTHO05D003962 3.1e-63 246.1 274 57.7
Migut.N00969 Erythranthe guttata HOM05D003412 ORTHO05D003962 7.6e-62 241.5 275 56.4
TAR365G0256 Trochodendron aralioides HOM05D003412 ORTHO05D003962 1.3e-61 240.7 272 56.6
FAN05G5683 Fragaria x ananassa HOM05D003412 ORTHO05D003962 2.2e-61 240.0 274 54.7
Aqoxy5G02790 Aquilegia oxysepala HOM05D003412 ORTHO05D003962 4.9e-61 238.8 274 54.4
TAR636G2549 Trochodendron aralioides HOM05D003412 ORTHO05D003962 6.4e-61 238.4 274 55.8
Sp2g21210 Schrenkiella parvula HOM05D003412 ORTHO05D003962 1.1e-60 237.7 159 79.9
BolC5t29502H Brassica oleracea HOM05D003412 ORTHO05D003962 1.4e-60 237.3 276 53.6
CARHR186800 Cardamine hirsuta HOM05D003412 ORTHO05D003962 1.4e-60 237.3 274 54.4
Manes.08G107900 Manihot esculenta HOM05D003412 ORTHO05D003962 1.4e-60 237.3 159 80.5
Rhsim11G0101700 Rhododendron simsii HOM05D003412 ORTHO05D003962 1.4e-60 237.3 180 70.6
Thhalv10004552m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 4.1e-60 235.7 274 54.0
Potri.005G003600 Populus trichocarpa HOM05D003412 ORTHO05D003962 4.1e-60 235.7 274 54.0
QL03p010236 Quercus lobata HOM05D003412 ORTHO05D003962 4.1e-60 235.7 273 54.9
Oeu029183.1 Olea europaea HOM05D003412 ORTHO05D003962 2.1e-59 233.4 193 66.8
Potri.013G003400 Populus trichocarpa HOM05D003412 ORTHO05D003962 2.7e-59 233.0 157 78.3
QL03p010471 Quercus lobata HOM05D003412 ORTHO05D003962 2.7e-59 233.0 273 54.6
AL6G38640 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 3.5e-59 232.6 274 53.3
Dinv30940 Davidia involucrata HOM05D003412 ORTHO05D003962 3.5e-59 232.6 157 81.5
C07p41480 Brassica napus HOM05D003412 ORTHO05D003962 4.6e-59 232.3 274 53.3
BolC7t44681H Brassica oleracea HOM05D003412 ORTHO05D003962 4.6e-59 232.3 274 53.3
C09p06270 Brassica napus HOM05D003412 ORTHO05D003962 1.1e-57 227.6 159 77.4
A09p05660 Brassica napus HOM05D003412 ORTHO05D003962 7.3e-57 224.9 275 53.5
Hma1.2p1_3841F.1_g337660 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 2.8e-56 223.0 239 58.6
Manes.09G180600 Manihot esculenta HOM05D003412 ORTHO05D003962 5.2e-55 218.8 274 52.2
AL3G16570 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 3.8e-53 212.6 169 71.0
PSO357G0133 Papaver somniferum HOM05D003412 ORTHO05D003962 4.9e-53 212.2 216 58.3
Carub.0003s0519 Capsella rubella HOM05D003412 ORTHO05D003962 1.6e-51 207.2 275 49.1
BcaB04g19713 Brassica carinata HOM05D003412 ORTHO05D003962 2.7e-51 206.5 274 49.6
PGR031G1608 Punica granatum HOM05D003412 ORTHO05D003962 7.8e-51 204.9 200 59.5
Aa31LG5G16210 Aethionema arabicum HOM05D003412 ORTHO05D003962 1.3e-50 204.1 274 48.9
C05p61450 Brassica napus HOM05D003412 ORTHO05D003962 1.7e-50 203.8 275 48.0
AT3G05830 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 2.3e-50 203.4 275 49.5
Thhalv10021934m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 2.3e-50 203.4 160 71.2
Sp3g04690 Schrenkiella parvula HOM05D003412 ORTHO05D003962 1.6e-48 197.2 163 66.3
BcaC05g30086 Brassica carinata HOM05D003412 ORTHO05D003962 2.1e-48 196.8 164 67.7
A05p42230 Brassica napus HOM05D003412 ORTHO05D003962 1.4e-47 194.1 164 66.5
CSS0037128 Camellia sinensis var. sinensis HOM05D003412 ORTHO05D003962 4.0e-47 192.6 179 62.0
BraA05t22941Z Brassica rapa HOM05D003412 ORTHO05D003962 5.3e-47 192.2 171 64.3
BolC5t34803H Brassica oleracea HOM05D003412 ORTHO05D003962 9.0e-47 191.4 171 64.9
BcaC05g29778 Brassica carinata HOM05D003412 ORTHO05D003962 1.5e-46 190.7 162 65.4
CDE02G2375 Ceratophyllum demersum HOM05D000427 ORTHO05D000386 5.4e-44 182.2 273 42.9
AT1G09483 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 7.6e-30 135.2 109 72.5
Mapoly0116s0017 Marchantia polymorpha HOM05D003412 ORTHO05D003962 4.9e-29 132.5 188 42.6
Zm00001eb075980 Zea mays HOM05D003412 ORTHO05D003962 3.7e-24 116.3 141 51.8
unitig_26.g8997 Utricularia gibba HOM05D003412 ORTHO05D003962 2.9e-21 106.7 183 41.5
Zm00001eb129850 Zea mays HOM05D003412 ORTHO05D003962 1.9e-20 104.0 275 31.6
Os01g0292700 Oryza sativa ssp. japonica HOM05D003412 ORTHO05D003962 1.4e-18 97.8 277 35.0
Zm00001eb113430 Zea mays HOM05D003412 ORTHO05D003962 1.0e-13 81.6 187 38.0
Zm00001eb080250 Zea mays HOM05D003412 ORTHO05D003962 4.7e-11 72.8 101 47.5
Medtr7g012670 Medicago truncatula HOM05D003412 ORTHO05D261047 8.2e-08 62.0 56 62.5
unitig_26.g8998 Utricularia gibba HOM05D003412 ORTHO05D003962 1.8e-07 60.8 75 46.7
Zm00001eb052040 Zea mays HOM05D003412 ORTHO05D003962 2.0e-06 57.4 135 34.8
MBI06_g33528_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 3.4e-06 56.6 39 82.1


User provided reference genes

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