Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 8.0e-61 236.9 118 100.0
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 3.2e-49 198.4 117 88.9
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 2.3e-47 192.2 118 82.2
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 6.6e-47 190.7 119 80.7
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 1.9e-46 189.1 114 83.3
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 4.3e-46 188.0 118 84.7
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 4.7e-45 184.5 118 80.5
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.8e-44 182.6 114 81.6
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.5e-43 179.5 119 77.3
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.4e-41 172.9 116 79.3
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 4.1e-41 171.4 116 74.1
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 3.5e-40 168.3 115 75.7
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 4.6e-40 167.9 115 77.4
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 1.0e-39 166.8 101 79.2
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.0e-39 166.8 101 79.2
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.0e-39 166.8 101 79.2
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.0e-39 166.8 101 79.2
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 1.7e-39 166.0 116 71.6
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.3e-39 165.6 97 86.6
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 5.1e-39 164.5 116 75.0
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 6.6e-39 164.1 116 71.6
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 6.6e-39 164.1 94 87.2
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 6.6e-39 164.1 116 72.4
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 6.6e-39 164.1 117 71.8
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.1e-38 163.3 119 72.3
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 2.5e-38 162.2 116 74.1
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 3.3e-38 161.8 95 85.3
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 9.5e-38 160.2 115 73.0
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 1.2e-37 159.8 117 74.4
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.6e-37 159.5 119 70.6
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 1.6e-37 159.5 116 70.7
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 1.6e-37 159.5 116 70.7
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.1e-37 159.1 117 69.2
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 2.8e-37 158.7 120 68.3
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 3.6e-37 158.3 118 70.3
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 3.6e-37 158.3 116 66.4
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.6e-37 158.3 118 72.9
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 1.1e-36 156.8 116 70.7
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.1e-36 156.8 117 70.9
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 1.1e-36 156.8 118 72.0
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.4e-36 156.4 95 83.2
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.4e-36 156.4 117 71.8
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 2.3e-36 155.6 102 77.5
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 2.3e-36 155.6 86 87.2
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 3.1e-36 155.2 85 85.9
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 5.2e-36 154.5 108 72.2
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 8.9e-36 153.7 116 69.0
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 8.9e-36 153.7 117 70.1
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 8.9e-36 153.7 118 71.2
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.2e-35 153.3 116 69.0
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.2e-35 153.3 117 69.2
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 2.0e-35 152.5 96 78.1
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 2.0e-35 152.5 88 83.0
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.6e-35 152.1 116 63.8
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 2.6e-35 152.1 121 66.9
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.4e-35 151.8 118 67.8
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 3.4e-35 151.8 103 72.8
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 3.4e-35 151.8 118 68.6
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 4.4e-35 151.4 118 69.5
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 5.8e-35 151.0 114 68.4
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 5.8e-35 151.0 116 69.8
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 7.6e-35 150.6 118 66.9
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 7.6e-35 150.6 116 66.4
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 7.6e-35 150.6 116 66.4
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 7.6e-35 150.6 114 65.8
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.3e-34 149.8 118 67.8
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 1.3e-34 149.8 111 73.0
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.3e-34 149.8 118 66.1
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 1.7e-34 149.4 116 65.5
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 1.7e-34 149.4 118 68.6
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 2.2e-34 149.1 118 60.2
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 2.9e-34 148.7 116 65.5
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 2.9e-34 148.7 116 65.5
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 2.9e-34 148.7 116 62.9
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 4.9e-34 147.9 114 65.8
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 6.4e-34 147.5 97 73.2
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 6.4e-34 147.5 109 68.8
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 8.4e-34 147.1 116 62.9
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 8.4e-34 147.1 116 62.9
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.1e-33 146.7 116 65.5
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.1e-33 146.7 121 66.1
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.4e-33 146.4 116 62.1
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.9e-33 146.0 116 62.1
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.9e-33 146.0 113 67.3
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 2.4e-33 145.6 116 65.5
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 2.4e-33 145.6 91 79.1
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 2.4e-33 145.6 117 65.8
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 3.2e-33 145.2 106 67.9
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 5.4e-33 144.4 97 75.3
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 7.1e-33 144.1 106 67.0
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 7.1e-33 144.1 76 90.8
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 9.2e-33 143.7 116 65.5
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.2e-32 143.3 110 66.4
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.1e-32 142.5 117 60.7
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.7e-32 142.1 116 66.4
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 2.7e-32 142.1 100 70.0
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 3.5e-32 141.7 85 77.6
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.5e-32 141.7 87 79.3
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.5e-32 141.7 145 57.9
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 3.5e-32 141.7 97 74.2
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 6.0e-32 141.0 95 74.7
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.8e-32 140.6 95 74.7
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.8e-32 140.6 95 74.7
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.3e-31 139.8 116 62.9
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.3e-31 139.8 116 59.5
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 3.0e-31 138.7 116 62.1
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 3.0e-31 138.7 101 68.3
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.9e-31 138.3 95 72.6
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.6e-31 137.5 95 73.7
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 6.6e-31 137.5 112 66.1
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.9e-30 136.0 132 55.3
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 4.3e-30 134.8 102 64.7
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 7.3e-30 134.0 116 61.2
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 7.3e-30 134.0 116 59.5
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 9.6e-30 133.7 84 78.6
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 3.6e-29 131.7 118 60.2
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 4.7e-29 131.3 159 51.6
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 8.1e-29 130.6 93 68.8
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 1.8e-28 129.4 86 72.1
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.8e-28 129.4 119 57.1
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.8e-28 129.4 116 59.5
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 4.0e-28 128.3 120 60.0
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 4.0e-28 128.3 120 57.5
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.4e-27 125.2 79 69.6
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.4e-27 125.2 79 69.6
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 2.2e-26 122.5 72 80.6
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 6.4e-26 120.9 79 68.4
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 3.5e-24 115.2 81 66.7
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 3.9e-23 111.7 77 67.5
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 3.9e-23 111.7 79 67.1
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 6.6e-23 110.9 106 59.4
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 8.7e-23 110.5 92 64.1
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 1.1e-22 110.2 92 59.8
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.5e-22 109.0 92 65.2
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 4.3e-22 108.2 77 66.2
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.6e-22 107.1 114 56.1
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 8.1e-21 104.0 91 62.6
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.8e-20 102.8 97 61.9
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 6.9e-20 100.9 67 74.6
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 9.0e-20 100.5 95 57.9
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 1.5e-19 99.8 68 75.0
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.7e-18 96.3 61 77.0
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 3.8e-18 95.1 74 63.5
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 4.9e-18 94.7 77 59.7
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 4.9e-18 94.7 77 59.7
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 7.1e-17 90.9 50 88.0
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 7.1e-17 90.9 100 52.0
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.2e-16 90.1 52 82.7
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 4.6e-16 88.2 79 51.9
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 4.6e-16 88.2 68 57.4
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.3e-15 86.7 61 72.1
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 2.5e-14 82.4 76 56.6
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 2.1e-13 79.3 63 61.9
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 8.1e-13 77.4 71 49.3
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 4.0e-12 75.1 55 63.6
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 5.3e-12 74.7 53 67.9
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 3.4e-11 72.0 78 52.6
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 7.6e-11 70.9 71 59.2
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 1.1e-09 67.0 72 48.6
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.6e-08 63.2 76 48.7
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 3.9e-07 58.5 65 43.1
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 3.9e-07 58.5 65 43.1


User provided reference genes

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