Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 4.9e-141 504.6 278 100.0
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 5.2e-127 458.0 279 90.7
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 1.2e-120 436.8 278 83.5
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.3e-117 426.8 279 82.1
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 1.5e-110 403.3 283 80.9
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.7e-106 389.8 279 73.1
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 3.0e-106 389.0 279 73.1
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 3.6e-104 382.1 251 77.3
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 4.4e-102 375.2 248 77.8
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 4.3e-97 358.6 285 67.7
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 1.6e-91 340.1 248 71.8
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 2.7e-91 339.3 243 71.2
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 1.3e-88 330.5 239 71.1
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 2.8e-88 329.3 242 70.7
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 4.0e-87 325.5 246 69.9
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 1.2e-86 323.9 262 66.4
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 1.5e-86 323.6 207 76.8
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 5.8e-86 321.6 246 70.3
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 2.2e-85 319.7 241 68.9
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 2.9e-85 319.3 244 67.6
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 6.4e-85 318.2 234 69.7
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 4.2e-84 315.5 234 69.7
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 6.0e-83 311.6 204 75.5
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 7.9e-83 311.2 297 62.6
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 6.7e-82 308.1 205 74.6
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 6.7e-82 308.1 235 66.4
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.1e-81 307.4 245 66.1
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 1.9e-81 306.6 230 68.3
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 2.5e-81 306.2 253 63.2
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.6e-80 303.5 222 69.8
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 2.8e-80 302.8 236 66.5
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 3.7e-80 302.4 245 65.7
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 8.2e-80 301.2 201 73.1
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 2.4e-79 299.7 254 63.0
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 2.0e-78 296.6 250 62.4
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 4.5e-78 295.4 211 71.6
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 1.7e-77 293.5 235 65.5
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 2.2e-77 293.1 209 67.0
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 2.2e-77 293.1 211 68.7
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 2.2e-77 293.1 241 65.1
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 2.9e-77 292.7 209 70.3
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 8.4e-77 291.2 242 63.2
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 1.9e-76 290.0 226 63.7
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 3.2e-76 289.3 207 70.5
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 7.1e-76 288.1 237 63.7
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 9.3e-76 287.7 278 56.8
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 9.3e-76 287.7 214 68.7
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 1.3e-74 283.9 216 67.6
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 1.8e-74 283.5 231 63.6
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 2.3e-74 283.1 207 68.1
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.3e-74 283.1 191 73.8
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 5.1e-74 282.0 210 65.2
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 5.1e-74 282.0 217 66.4
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 8.7e-74 281.2 245 62.9
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.5e-73 280.4 234 62.8
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 2.5e-73 279.6 202 67.8
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 2.5e-73 279.6 222 66.7
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 7.4e-73 278.1 206 70.4
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 9.7e-73 277.7 244 63.1
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 2.2e-72 276.6 223 61.9
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 3.7e-72 275.8 206 68.0
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 1.4e-71 273.9 242 60.3
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 3.1e-71 272.7 259 59.5
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 5.3e-71 271.9 214 65.4
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 2.6e-70 269.6 210 63.3
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 2.6e-70 269.6 209 65.6
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 4.5e-70 268.9 210 63.3
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 5.9e-70 268.5 236 60.2
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 7.7e-70 268.1 237 62.4
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 7.7e-70 268.1 245 60.8
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.0e-69 267.7 193 69.4
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 2.2e-69 266.5 206 64.6
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 3.8e-69 265.8 243 58.4
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 8.5e-69 264.6 237 59.9
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 7.2e-68 261.5 206 61.7
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 1.6e-67 260.4 200 65.5
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.7e-67 259.6 245 59.2
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 2.7e-67 259.6 245 59.2
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 4.6e-67 258.8 206 60.7
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.3e-66 256.5 236 58.5
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.3e-66 256.5 236 58.5
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 6.7e-66 255.0 206 61.2
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 4.3e-65 252.3 219 64.4
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 7.4e-65 251.5 240 57.1
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 7.4e-65 251.5 206 62.6
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 9.7e-65 251.1 259 54.1
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 1.7e-64 250.4 236 57.2
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.7e-64 250.4 236 57.2
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.2e-64 250.0 258 54.3
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 1.4e-63 247.3 214 62.6
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 1.8e-63 246.9 227 56.8
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 4.1e-63 245.7 184 65.8
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 5.3e-63 245.4 241 55.6
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 1.2e-62 244.2 235 57.4
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 1.3e-61 240.7 184 64.7
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 5.0e-61 238.8 209 59.3
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 5.0e-61 238.8 209 59.3
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 8.5e-61 238.0 209 59.3
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.4e-60 237.3 259 51.4
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.9e-60 236.9 213 60.1
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 4.2e-60 235.7 210 60.0
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.6e-59 233.8 186 63.4
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.6e-59 233.8 241 53.5
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 7.9e-59 231.5 202 58.9
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 1.8e-58 230.3 211 59.7
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 3.0e-58 229.6 234 53.4
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 8.8e-58 228.0 209 56.5
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 8.8e-58 228.0 209 57.4
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 2.6e-57 226.5 210 57.1
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 4.4e-57 225.7 258 50.4
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 5.7e-57 225.3 202 56.4
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.8e-56 223.0 255 51.0
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.8e-56 223.0 255 51.0
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 1.8e-55 220.3 150 72.7
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 5.3e-55 218.8 199 55.3
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 9.1e-55 218.0 203 56.2
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 1.5e-54 217.2 210 55.2
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 2.6e-54 216.5 256 49.2
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 4.5e-54 215.7 209 55.0
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 4.5e-54 215.7 238 50.4
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 1.3e-53 214.2 207 55.1
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 8.5e-53 211.5 189 58.2
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.4e-52 210.7 157 66.9
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 2.5e-52 209.9 209 54.5
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.2e-51 207.6 204 54.4
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 2.1e-51 206.8 210 51.0
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.7e-51 206.5 204 53.9
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.7e-51 205.7 212 49.1
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 4.7e-51 205.7 212 49.1
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.1e-51 205.3 211 49.3
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.4e-50 204.1 212 48.6
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.4e-47 194.1 218 53.2
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.6e-46 190.7 214 50.0
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 5.9e-46 188.7 227 48.5
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 7.7e-46 188.3 201 51.2
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.0e-45 188.0 181 50.8
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 3.8e-45 186.0 143 67.1
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 1.5e-44 184.1 218 46.8
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.9e-44 183.7 202 47.0
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.9e-44 183.7 202 47.0
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 1.6e-43 180.6 169 55.6
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 1.4e-42 177.6 208 50.5
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 1.8e-42 177.2 207 49.3
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 2.3e-42 176.8 236 41.1
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 8.8e-42 174.9 201 45.8
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 1.5e-41 174.1 225 43.1
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 2.0e-41 173.7 201 44.8
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 2.0e-41 173.7 201 45.3
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 3.4e-41 172.9 207 47.8
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.8e-39 167.2 192 45.3
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 9.1e-39 164.9 199 45.7
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 3.5e-38 162.9 200 46.0
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 5.9e-38 162.2 213 41.3
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 2.9e-37 159.8 156 53.8
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.6e-35 154.1 197 42.6
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 9.8e-33 144.8 129 59.7
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 1.3e-32 144.4 131 59.5
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 6.1e-27 125.6 158 43.0
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 8.9e-26 121.7 158 43.0
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 9.8e-25 118.2 201 37.8
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 4.7e-19 99.4 90 53.3
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 6.1e-19 99.0 90 61.1
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 8.0e-19 98.6 75 69.3
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 1.4e-18 97.8 105 56.2
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.7e-16 90.9 157 34.4
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 7.0e-15 85.5 69 68.1
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 1.2e-14 84.7 67 64.2
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 6.0e-14 82.4 62 62.9
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 8.9e-10 68.6 214 22.4
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 3.5e-06 56.6 40 65.0
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 6.0e-06 55.8 214 24.3


User provided reference genes

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