Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 5.4e-178 627.5 304 100.0
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 4.6e-145 518.1 274 91.6
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 9.7e-143 510.4 298 80.5
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 2.8e-142 508.8 299 79.9
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 2.7e-137 492.3 300 78.0
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 6.3e-134 481.1 296 78.4
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 1.1e-133 480.3 269 85.9
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 7.0e-133 477.6 293 77.8
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 3.6e-129 465.3 298 74.5
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 5.2e-128 461.5 302 71.9
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 2.0e-124 449.5 324 68.5
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 6.5e-115 417.9 284 68.7
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.6e-113 413.3 281 67.6
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 2.7e-113 412.5 294 66.7
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 3.6e-113 412.1 280 70.0
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 4.7e-113 411.8 284 65.8
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.3e-112 409.5 294 63.6
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 4.4e-111 405.2 280 66.8
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 2.2e-110 402.9 273 70.0
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 2.4e-109 399.4 277 68.2
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 1.6e-108 396.7 278 66.5
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 5.9e-108 394.8 278 66.2
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 7.7e-108 394.4 278 66.2
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 1.3e-107 393.7 291 63.9
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.9e-107 392.5 278 66.2
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 1.5e-106 390.2 303 67.3
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 1.9e-106 389.8 278 65.1
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 4.2e-106 388.7 284 64.4
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 2.8e-105 386.0 284 64.4
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 6.1e-105 384.8 295 62.0
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 4.0e-104 382.1 282 63.1
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 5.2e-104 381.7 283 65.4
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 5.2e-104 381.7 271 66.1
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.5e-103 380.2 283 65.0
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.0e-103 379.8 298 61.1
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 2.0e-103 379.8 264 64.4
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 3.4e-103 379.0 277 63.5
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 5.7e-103 378.3 258 67.8
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 9.8e-103 377.5 272 65.8
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.7e-102 376.7 277 63.2
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 2.2e-102 376.3 277 65.7
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 3.7e-102 375.6 277 64.3
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 3.7e-102 375.6 283 62.9
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 6.3e-102 374.8 279 62.7
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 1.1e-101 374.0 268 63.1
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.8e-101 373.2 273 64.5
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 1.8e-101 373.2 285 61.1
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 2.4e-101 372.9 273 63.4
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 2.4e-101 372.9 285 61.1
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 9.2e-101 370.9 288 62.5
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 9.2e-101 370.9 285 61.1
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 1.2e-100 370.5 271 63.5
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.2e-100 370.5 284 61.3
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 1.6e-100 370.2 282 63.5
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 1.6e-100 370.2 277 62.1
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 3.5e-100 369.0 246 68.3
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 1.3e-99 367.1 273 63.7
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 6.6e-99 364.8 253 64.8
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 2.5e-98 362.8 262 63.7
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 4.3e-98 362.1 292 61.6
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 5.6e-98 361.7 276 61.2
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 7.3e-98 361.3 279 62.7
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 9.5e-98 360.9 267 64.0
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 9.5e-98 360.9 278 60.1
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.6e-97 360.1 276 60.5
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 6.1e-97 358.2 279 59.9
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.0e-96 357.5 261 64.4
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 1.4e-96 357.1 264 64.4
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 4.0e-96 355.5 265 64.9
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 5.2e-96 355.1 277 60.6
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 3.4e-95 352.4 284 60.2
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.7e-94 350.1 293 57.3
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 6.4e-94 348.2 233 67.8
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 6.4e-94 348.2 296 57.4
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.4e-93 347.1 268 61.9
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 1.9e-93 346.7 293 59.4
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 4.1e-93 345.5 290 57.6
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 9.2e-93 344.4 260 60.8
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 3.9e-91 339.0 276 59.1
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 6.6e-91 338.2 260 60.0
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 1.5e-90 337.0 278 56.1
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 1.5e-90 337.0 273 59.0
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 2.8e-89 332.8 262 60.7
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 3.6e-89 332.4 286 56.3
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 1.4e-88 330.5 289 55.0
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.8e-88 330.1 252 61.9
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 2.3e-88 329.7 255 60.0
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 1.5e-87 327.0 267 58.1
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 2.2e-86 323.2 272 57.0
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 4.1e-85 318.9 275 56.7
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 1.5e-82 310.5 273 52.7
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 4.4e-79 298.9 239 60.7
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 3.0e-75 286.2 263 55.1
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 2.8e-73 279.6 265 48.3
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 4.4e-71 272.3 276 52.9
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 2.4e-69 266.5 277 50.2
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 4.6e-68 262.3 275 50.5
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 4.6e-68 262.3 277 50.2
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.0e-67 261.2 275 50.2
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 3.9e-67 259.2 275 49.5
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 3.9e-67 259.2 275 49.5
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 5.1e-67 258.8 277 48.7
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 5.6e-66 255.4 278 49.6
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 1.6e-65 253.8 282 48.9
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 2.8e-65 253.1 271 49.1
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 3.6e-65 252.7 283 48.8
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 6.2e-65 251.9 277 47.7
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 1.1e-64 251.1 277 47.7
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 1.4e-64 250.8 280 49.3
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 6.9e-64 248.4 256 46.9
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 3.4e-63 246.1 281 47.3
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.4e-63 246.1 276 47.1
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 4.4e-63 245.7 256 48.4
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 2.4e-61 240.0 282 44.3
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 2.8e-57 226.5 293 39.2
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 6.9e-48 195.3 240 43.8
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.8e-46 189.5 199 48.7
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.9e-46 189.1 234 41.9
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 1.9e-45 187.2 274 38.0
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 1.3e-43 181.0 281 38.1
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 8.2e-41 171.8 228 40.4
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 1.7e-38 164.1 277 37.9
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 3.5e-36 156.4 200 41.5
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 1.0e-35 154.8 200 41.5
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 1.8e-35 154.1 250 38.0
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 2.3e-35 153.7 247 37.7
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 3.9e-35 152.9 186 45.2
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 5.1e-35 152.5 200 40.5
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-34 151.4 187 43.3
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 4.3e-34 149.4 185 42.7
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 7.4e-34 148.7 208 41.8
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 5.3e-32 142.5 208 41.8
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 2.6e-31 140.2 269 34.6
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.6e-28 131.0 112 52.7
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.3e-27 127.1 94 62.8
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 2.3e-27 127.1 153 43.8
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 3.0e-27 126.7 146 44.5
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 2.4e-24 117.1 146 44.5
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 1.2e-20 104.8 208 35.6
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 1.2e-20 104.8 208 35.6
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 7.9e-20 102.1 177 31.6
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 5.1e-19 99.4 151 41.7
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 2.0e-15 87.4 92 48.9
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 2.0e-15 87.4 92 48.9
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 2.9e-14 83.6 96 42.7
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 2.5e-13 80.5 95 42.1
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 6.1e-12 75.9 96 39.6


User provided reference genes

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