Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 1.7e-61 239.2 127 100.0
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 9.5e-60 233.4 127 95.3
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 3.6e-59 231.5 127 95.3
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 3.6e-59 231.5 127 95.3
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 1.7e-56 222.6 127 91.3
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 3.8e-56 221.5 127 90.6
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.4e-55 219.5 127 89.8
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.4e-55 219.5 127 89.8
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 2.4e-55 218.8 127 89.8
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 3.2e-55 218.4 127 89.0
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 5.4e-55 217.6 127 89.8
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 7.1e-55 217.2 127 89.0
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 9.2e-55 216.9 127 89.0
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 9.2e-55 216.9 127 89.0
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 9.2e-55 216.9 127 89.0
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 1.2e-54 216.5 127 89.0
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 1.2e-54 216.5 127 89.0
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 1.6e-54 216.1 127 89.8
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 1.6e-54 216.1 128 89.8
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 2.1e-54 215.7 126 89.7
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 2.7e-54 215.3 127 88.2
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 2.7e-54 215.3 127 89.8
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 88.2
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 88.2
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 4.6e-54 214.5 127 88.2
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 6.0e-54 214.2 127 86.6
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 6.0e-54 214.2 125 87.2
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 6.0e-54 214.2 127 87.4
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 7.8e-54 213.8 128 88.3
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 1.0e-53 213.4 124 89.5
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 1.3e-53 213.0 127 87.4
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 1.7e-53 212.6 127 85.8
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.7e-53 212.6 127 85.8
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 1.7e-53 212.6 127 85.8
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 2.3e-53 212.2 127 85.8
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.9e-53 211.5 127 85.8
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 5.1e-53 211.1 127 86.6
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 6.6e-53 210.7 127 85.8
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 6.6e-53 210.7 127 85.0
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 6.6e-53 210.7 127 85.0
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 6.6e-53 210.7 126 85.7
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 8.7e-53 210.3 128 87.5
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 1.9e-52 209.1 124 87.9
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 1.9e-52 209.1 127 87.4
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 3.3e-52 208.4 127 85.8
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 3.3e-52 208.4 128 86.7
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 3.3e-52 208.4 127 86.6
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 4.3e-52 208.0 125 87.2
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 4.3e-52 208.0 127 85.0
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 7.3e-52 207.2 128 85.9
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 1.6e-51 206.1 129 85.3
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 2.1e-51 205.7 123 87.0
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 2.8e-51 205.3 123 87.0
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 6.2e-51 204.1 126 82.5
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 8.1e-51 203.8 126 81.7
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 8.1e-51 203.8 126 83.3
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 1.1e-50 203.4 127 81.9
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 1.4e-50 203.0 128 85.9
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 1.4e-50 203.0 126 84.9
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.4e-50 203.0 127 83.5
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 3.1e-50 201.8 129 82.9
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 3.1e-50 201.8 127 81.1
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 3.1e-50 201.8 126 82.5
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 3.1e-50 201.8 129 82.9
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 4.0e-50 201.4 127 80.3
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 4.0e-50 201.4 127 83.5
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 4.0e-50 201.4 127 82.7
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 5.2e-50 201.1 129 82.9
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 1.2e-49 199.9 129 82.2
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 1.5e-49 199.5 129 82.9
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 1.5e-49 199.5 129 82.9
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 3.4e-49 198.4 129 82.2
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 9.9e-49 196.8 127 79.5
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 6.4e-48 194.1 124 79.8
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 1.1e-47 193.4 126 80.2
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 1.9e-47 192.6 127 79.5
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 2.4e-47 192.2 122 82.8
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.4e-47 192.2 127 78.7
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 4.2e-47 191.4 124 79.8
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 5.4e-47 191.0 127 75.6
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 9.3e-47 190.3 130 79.2
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 2.1e-46 189.1 127 77.2
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 2.1e-46 189.1 130 78.5
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 2.1e-46 189.1 122 81.1
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 2.7e-46 188.7 127 76.4
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 3.5e-46 188.3 126 77.0
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 4.6e-46 188.0 127 76.4
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 7.8e-46 187.2 125 77.6
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 7.8e-46 187.2 126 77.0
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 1.7e-45 186.0 131 76.3
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 3.0e-45 185.3 127 74.0
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 8.7e-45 183.7 131 74.0
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 8.7e-45 183.7 131 74.0
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 1.1e-44 183.3 125 77.6
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 1.1e-44 183.3 122 77.0
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 1.5e-44 183.0 122 77.0
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 2.5e-44 182.2 130 75.4
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 2.5e-44 182.2 131 73.3
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 2.5e-44 182.2 118 79.7
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 2.5e-44 182.2 118 79.7
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 4.3e-44 181.4 131 74.8
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 5.6e-44 181.0 118 80.5
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 6.2e-43 177.6 130 73.8
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 1.4e-42 176.4 127 75.6
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 2.4e-42 175.6 127 69.3
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 6.9e-42 174.1 129 75.2
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 1.7e-40 169.5 127 70.1
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 2.2e-40 169.1 127 70.1
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 4.9e-40 167.9 147 63.3
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 4.9e-40 167.9 129 72.9
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 4.9e-40 167.9 129 72.9
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 1.4e-39 166.4 127 67.7
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 1.9e-39 166.0 127 67.7
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 4.6e-38 161.4 127 66.1
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 3.3e-36 155.2 148 61.5
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 1.3e-35 153.3 127 64.6
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 6.2e-35 151.0 127 63.8
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 8.1e-35 150.6 86 87.2
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 3.4e-33 145.2 127 59.8
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 2.9e-32 142.1 127 59.8
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 4.9e-32 141.4 88 85.2
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 7.9e-30 134.0 87 82.8
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 6.7e-29 131.0 87 80.5
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 1.1e-28 130.2 133 55.6
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 3.4e-25 118.6 87 70.1
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 1.8e-21 106.3 121 48.8
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 2.6e-17 92.4 121 44.6
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 4.5e-17 91.7 61 78.7
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 5.0e-16 88.2 121 41.3
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 3.6e-14 82.0 46 91.3
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 3.9e-13 78.6 40 92.5
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 4.3e-12 75.1 40 90.0
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 1.1e-10 70.5 50 74.0
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.3e-08 63.5 31 93.5
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 1.4e-07 60.1 41 68.3


User provided reference genes

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