Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 1.8e-277 959.1 700 100.0
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 1.5e-130 471.1 677 51.8
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 2.9e-126 456.8 702 46.2
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 1.2e-116 424.9 706 47.0
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 1.2e-58 232.3 735 32.8
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 9.9e-58 229.2 705 30.8
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 4.3e-53 213.8 786 31.8
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.9e-40 171.8 391 37.9
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 4.3e-37 160.6 726 27.7
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 2.2e-36 158.3 733 27.3
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 3.1e-35 154.5 758 27.3
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 4.1e-35 154.1 228 43.9
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 6.9e-35 153.3 376 30.9
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.5e-34 152.1 310 39.0
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 3.4e-34 151.0 227 40.5
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 1.7e-33 148.7 315 32.4
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 1.5e-29 135.6 391 29.7
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 2.8e-28 131.3 191 45.0
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 4.8e-28 130.6 225 36.9
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 6.3e-28 130.2 316 33.2
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 5.3e-27 127.1 309 36.2
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 1.5e-26 125.6 393 32.1
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 5.9e-26 123.6 388 28.9
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 5.9e-26 123.6 385 30.1
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 2.2e-25 121.7 208 38.0
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 2.2e-25 121.7 388 31.4
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 1.4e-24 119.0 210 37.1
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.4e-24 119.0 227 34.8
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 1.4e-24 119.0 793 29.4
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 1.9e-24 118.6 359 34.8
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 1.9e-24 118.6 227 37.0
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 3.2e-24 117.9 227 34.8
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 3.2e-24 117.9 227 34.8
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 3.6e-23 114.4 388 30.4
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 3.0e-22 111.3 485 32.4
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 6.7e-22 110.2 162 45.7
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 8.8e-22 109.8 226 36.3
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 1.1e-21 109.4 370 32.2
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.5e-21 109.0 747 24.6
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 2.0e-21 108.6 747 24.6
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 2.6e-21 108.2 313 30.7
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 3.3e-21 107.8 318 27.7
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 3.3e-21 107.8 382 27.0
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 7.4e-21 106.7 389 32.4
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 3.7e-20 104.4 226 37.2
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 1.8e-19 102.1 379 27.7
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 2.4e-19 101.7 203 37.4
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 4.1e-19 100.9 160 38.8
Glyma.19G085166 Glycine max HOM05D004923 ORTHO05D005940 5.3e-19 100.5 320 29.4
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 5.3e-19 100.5 388 26.5
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 6.9e-19 100.1 383 30.0
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 1.2e-18 99.4 347 26.2
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 1.2e-18 99.4 160 38.8
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.5e-18 99.0 161 40.4
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.0e-18 98.6 160 38.8
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 4.5e-18 97.4 220 35.0
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 4.5e-18 97.4 315 34.9
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 5.9e-18 97.1 160 38.1
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 7.7e-18 96.7 332 25.6
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 7.7e-18 96.7 160 38.1
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 1.3e-17 95.9 225 35.1
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 1.7e-17 95.5 211 33.6
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 2.2e-17 95.1 208 34.6
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 6.5e-17 93.6 385 30.4
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 6.5e-17 93.6 385 30.4
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 1.4e-16 92.4 723 22.1
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 1.4e-16 92.4 313 25.9
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.9e-16 92.0 322 28.0
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 3.2e-16 91.3 387 25.8
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 4.2e-16 90.9 155 37.4
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 2.1e-15 88.6 385 26.2
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 2.1e-15 88.6 317 28.7
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 4.7e-15 87.4 377 24.9
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 1.0e-14 86.3 375 23.7
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 3.9e-14 84.3 285 27.7
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 5.2e-14 84.0 225 32.4
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.1e-13 82.8 281 30.6
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 1.5e-13 82.4 383 24.0
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 2.0e-13 82.0 214 29.9
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 2.6e-13 81.6 365 24.4
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 3.3e-13 81.3 132 42.4
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 3.3e-13 81.3 302 27.5
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.2e-12 78.6 221 29.0
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 2.8e-12 78.2 142 40.8
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 6.3e-12 77.0 371 24.8
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 1.8e-11 75.5 125 40.0
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 1.8e-11 75.5 383 23.0
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 5.3e-11 73.9 335 27.8
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 7.0e-11 73.6 219 30.1
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 7.0e-11 73.6 130 40.0
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 7.0e-11 73.6 231 31.2
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 7.0e-11 73.6 231 31.2
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 1.2e-10 72.8 227 31.3
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 1.2e-10 72.8 136 39.7
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 1.6e-10 72.4 225 27.6
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 1.6e-10 72.4 366 30.3
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 2.0e-10 72.0 138 39.9
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 4.5e-10 70.9 225 28.0
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 5.9e-10 70.5 212 30.2
Lsat_1_v5_gn_5_38100 Lactuca sativa HOM05D004923 ORTHO05D005940 5.9e-10 70.5 374 23.8
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 1.3e-09 69.3 137 38.7
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 1.3e-09 69.3 382 24.6
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 1.7e-09 68.9 392 23.5
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.2e-09 68.6 384 25.0
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 2.9e-09 68.2 214 29.0
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 1.5e-08 65.9 99 35.4
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 2.5e-08 65.1 340 29.1
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 2.1e-07 62.0 224 25.0
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 2.1e-07 62.0 218 29.8
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 3.6e-07 61.2 342 25.1
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 4.7e-07 60.8 186 31.7
Lj5g0022619 Lotus japonicus HOM05D000160 ORTHO05D000914 8.0e-07 60.1 220 30.5
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 2.3e-06 58.5 63 54.0
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 4.0e-06 57.8 108 40.7
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 4.0e-06 57.8 129 34.1
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 5.2e-06 57.4 744 21.4
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 6.7e-06 57.0 109 35.8


User provided reference genes

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