Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 4.8e-165 584.3 279 100.0
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 1.5e-134 483.0 288 82.3
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 5.1e-130 468.0 282 78.4
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 1.9e-129 466.1 278 78.1
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 1.6e-120 436.4 279 75.6
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 4.9e-117 424.9 280 73.6
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 1.2e-115 420.2 279 71.7
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 3.9e-114 415.2 271 73.1
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 1.1e-111 407.1 279 70.6
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 6.0e-107 391.3 280 69.6
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 1.6e-104 383.3 265 68.3
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 4.5e-102 375.2 273 67.4
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 6.7e-98 361.3 274 62.8
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 4.8e-96 355.1 255 64.7
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 4.2e-92 342.0 268 60.4
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 5.1e-90 335.1 257 60.7
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 2.1e-88 329.7 275 56.0
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 1.2e-86 323.9 279 56.3
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 4.5e-86 322.0 266 56.8
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 4.5e-86 322.0 260 57.7
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 1.3e-85 320.5 254 58.7
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.7e-85 320.1 260 57.3
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.7e-85 320.1 260 57.3
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 3.8e-85 318.9 279 53.4
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 2.5e-84 316.2 259 56.4
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 3.2e-84 315.8 260 56.5
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 7.2e-84 314.7 264 55.3
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 1.2e-83 313.9 264 56.4
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 2.7e-83 312.8 271 53.5
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 6.1e-83 311.6 275 54.2
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 6.1e-83 311.6 256 57.8
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 3.9e-82 308.9 265 55.1
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 3.9e-82 308.9 273 53.5
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 5.1e-82 308.5 268 54.5
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 1.1e-81 307.4 266 54.1
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 1.9e-81 306.6 273 56.0
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 2.5e-81 306.2 269 55.8
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 4.3e-81 305.4 266 56.0
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 4.8e-80 302.0 234 61.1
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 4.8e-80 302.0 258 55.0
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 8.2e-80 301.2 273 53.5
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 1.4e-79 300.4 294 51.0
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 8.5e-77 291.2 251 53.8
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 1.1e-76 290.8 257 53.7
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 3.2e-76 289.3 250 54.0
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 7.2e-76 288.1 254 53.9
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 9.4e-76 287.7 258 53.1
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 1.2e-75 287.3 254 53.5
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 2.1e-75 286.6 254 53.1
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 2.7e-75 286.2 246 54.9
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 3.6e-75 285.8 254 53.1
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 2.3e-74 283.1 263 50.6
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 5.1e-74 282.0 255 53.7
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 5.1e-74 282.0 271 50.6
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 6.7e-74 281.6 268 51.9
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 1.1e-73 280.8 253 51.0
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 1.5e-73 280.4 272 50.0
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 1.5e-73 280.4 257 51.4
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 2.0e-73 280.0 255 53.7
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 2.6e-73 279.6 255 53.7
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 3.3e-73 279.3 255 53.3
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 3.3e-73 279.3 279 52.3
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 5.7e-73 278.5 255 53.3
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 8.2e-72 274.6 266 48.1
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 1.4e-71 273.9 262 48.5
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.4e-71 273.9 260 51.9
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 2.4e-71 273.1 256 53.5
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 5.3e-71 271.9 251 49.4
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 1.2e-70 270.8 266 47.7
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 3.4e-70 269.2 259 50.6
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 4.5e-70 268.9 258 50.0
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 6.5e-69 265.0 263 49.8
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 1.4e-68 263.8 259 50.6
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 1.4e-68 263.8 263 50.6
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 5.5e-68 261.9 262 51.5
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 9.4e-68 261.2 270 49.3
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 1.2e-67 260.8 247 51.8
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 1.2e-67 260.8 242 54.1
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 1.2e-67 260.8 238 54.6
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 4.7e-67 258.8 250 48.0
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 4.7e-67 258.8 255 47.5
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 4.7e-67 258.8 253 47.8
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 2.3e-66 256.5 251 50.2
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 3.9e-66 255.8 267 49.4
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 7.4e-65 251.5 241 52.3
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 7.4e-65 251.5 247 49.0
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 9.7e-65 251.1 243 52.7
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 8.2e-64 248.1 242 52.1
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 1.1e-63 247.7 251 49.0
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 1.4e-63 247.3 285 45.6
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 1.2e-62 244.2 246 51.6
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 7.2e-60 235.0 235 49.8
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.2e-59 234.2 216 52.8
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 2.6e-57 226.5 257 45.9
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 9.7e-57 224.6 166 56.6
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 4.5e-54 215.7 138 65.9
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 3.2e-52 209.5 196 50.0
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 2.7e-51 206.5 211 45.0
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 2.7e-51 206.5 260 40.0
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 2.3e-45 186.8 209 45.0
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 2.1e-43 180.3 245 36.7
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 4.0e-42 176.0 211 42.2
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 4.0e-42 176.0 175 50.9
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 4.0e-42 176.0 254 38.6
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 7.8e-38 161.8 137 59.9
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 4.0e-34 149.4 203 39.4
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.1e-31 141.4 168 44.0
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 5.4e-31 139.0 217 33.6
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 1.7e-29 134.0 198 34.8
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 3.9e-29 132.9 243 37.4
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 1.1e-28 131.3 244 36.1
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 1.2e-27 127.9 248 32.7
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 3.1e-26 123.2 101 55.4
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 4.0e-26 122.9 166 39.2
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 1.2e-25 121.3 238 32.4
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 2.6e-25 120.2 238 29.0
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 9.2e-23 111.7 117 50.4
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 5.6e-20 102.4 132 47.7
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 4.0e-18 96.3 96 50.0
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 2.4e-15 87.0 106 46.2
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 4.1e-15 86.3 108 46.3
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 7.8e-14 82.0 130 36.9
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 8.6e-13 78.6 57 59.6
Cre03.g200651 Chlamydomonas reinhardtii HOM05D006625 ORTHO05D008060 5.2e-10 69.3 299 22.7
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 2.2e-08 63.9 227 26.0
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 3.2e-07 60.1 67 44.8
Actinidia40242 Actinidia chinensis HOM05D007775 ORTHO05D009858 3.5e-06 56.6 276 22.5
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 3.5e-06 56.6 270 21.9
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 7.8e-06 55.5 122 27.0


User provided reference genes

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