Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 6.3e-143 510.8 260 100.0
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 7.5e-128 460.7 261 88.5
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 3.2e-126 455.3 264 86.0
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 3.2e-126 455.3 261 88.9
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 1.7e-116 422.9 264 79.9
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 2.6e-112 409.1 265 79.2
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 2.3e-108 396.0 231 84.0
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 9.6e-107 390.6 231 84.8
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 8.1e-106 387.5 230 82.6
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 3.1e-105 385.6 239 80.3
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 2.7e-101 372.5 228 80.3
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 6.6e-100 367.9 228 78.9
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 1.6e-90 336.7 260 63.8
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 1.8e-89 333.2 270 64.4
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 6.9e-89 331.3 264 63.6
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 9.0e-89 330.9 262 65.6
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 3.4e-88 328.9 262 64.5
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 3.4e-88 328.9 284 60.2
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 7.6e-88 327.8 257 63.0
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 7.6e-88 327.8 257 63.0
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 7.6e-88 327.8 260 64.6
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 7.6e-88 327.8 269 63.2
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 2.9e-87 325.9 270 63.7
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 2.9e-87 325.9 267 63.7
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.8e-87 325.5 257 62.6
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 4.9e-87 325.1 259 62.9
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 4.9e-87 325.1 284 60.9
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 6.4e-87 324.7 258 62.8
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 6.4e-87 324.7 269 62.8
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 1.1e-86 323.9 267 63.7
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 1.4e-86 323.6 257 63.0
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 1.4e-86 323.6 267 63.3
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 7.1e-86 321.2 263 61.6
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 7.1e-86 321.2 275 61.1
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 9.3e-86 320.9 257 62.6
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 1.6e-85 320.1 269 60.2
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 1.6e-85 320.1 263 62.7
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 6.0e-85 318.2 225 69.3
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 1.0e-84 317.4 232 69.0
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 3.0e-84 315.8 265 60.8
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 3.0e-84 315.8 234 66.7
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 6.7e-84 314.7 263 60.5
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.9e-83 313.2 269 60.2
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 4.3e-83 312.0 282 60.3
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 7.4e-83 311.2 258 59.7
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 1.6e-82 310.1 266 59.8
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 1.6e-82 310.1 225 66.7
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 2.1e-82 309.7 260 61.9
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 2.8e-82 309.3 224 67.0
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 1.1e-81 307.4 265 58.5
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 1.1e-81 307.4 263 58.6
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.1e-81 307.4 229 65.1
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 1.1e-81 307.4 264 61.4
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.4e-81 307.0 257 59.9
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.4e-81 306.2 269 56.9
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 5.3e-81 305.1 264 60.6
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 5.3e-81 305.1 234 64.5
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 9.0e-81 304.3 262 61.8
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 1.2e-80 303.9 264 60.6
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 1.5e-80 303.5 258 58.5
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.0e-79 300.8 221 66.5
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 1.3e-79 300.4 257 60.3
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 1.7e-79 300.1 259 58.7
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 2.9e-79 299.3 221 66.5
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 4.9e-79 298.5 267 58.4
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 4.9e-79 298.5 238 62.6
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 1.1e-78 297.4 256 59.8
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.1e-78 297.4 236 63.1
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.1e-78 297.4 236 63.1
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.9e-78 296.6 257 58.8
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 2.5e-78 296.2 235 62.6
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 2.5e-78 296.2 235 62.6
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 3.2e-78 295.8 221 66.1
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 3.2e-78 295.8 269 56.1
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 4.2e-78 295.4 257 57.6
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 4.2e-78 295.4 257 57.6
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 4.2e-78 295.4 257 57.6
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.2e-77 293.9 271 56.5
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 2.7e-77 292.7 221 64.3
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.5e-77 292.4 221 65.6
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 4.6e-77 292.0 269 56.9
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 1.3e-76 290.4 266 55.3
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 1.8e-76 290.0 224 65.6
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 3.0e-76 289.3 224 63.8
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 3.3e-75 285.8 264 59.1
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 7.4e-75 284.6 270 54.8
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 9.7e-75 284.3 233 60.1
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.8e-73 280.0 238 60.5
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 2.4e-73 279.6 260 55.0
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 9.0e-73 277.7 281 53.0
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 3.4e-72 275.8 219 63.5
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 3.4e-72 275.8 270 56.7
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 2.9e-71 272.7 218 61.9
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 6.5e-71 271.6 241 58.5
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 1.9e-70 270.0 219 61.6
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 5.5e-70 268.5 209 62.7
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 2.7e-69 266.2 218 60.6
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 1.8e-68 263.5 220 59.1
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 1.9e-67 260.0 186 65.1
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 2.2e-66 256.5 320 45.6
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 2.2e-66 256.5 216 57.9
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 8.2e-66 254.6 208 56.2
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 1.3e-63 247.3 212 54.2
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 5.0e-63 245.4 219 59.8
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 6.9e-57 224.9 210 51.4
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 1.5e-56 223.8 467 33.6
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 1.2e-48 197.6 161 62.7
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 2.2e-47 193.4 212 43.9
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.2e-45 187.6 162 59.3
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 2.1e-45 186.8 214 44.4
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 9.1e-41 171.4 117 70.1
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.9e-38 163.7 122 66.4
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 5.5e-38 162.2 111 69.4
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 4.7e-37 159.1 106 69.8
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 5.2e-36 155.6 104 70.2
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.5e-30 137.5 99 65.7
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 2.8e-29 133.3 115 60.0
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 2.3e-28 130.2 116 60.3
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 1.3e-26 124.4 128 52.3
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 2.3e-23 113.6 231 30.7
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 2.7e-16 90.1 83 49.4
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 1.6e-13 80.9 76 53.9
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 2.1e-13 80.5 67 59.7
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 2.4e-09 67.0 77 44.2
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.2e-08 64.7 104 42.3


User provided reference genes

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