Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 0.0e+00 1730.7 915 100.0
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 0.0e+00 1601.6 916 92.7
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 0.0e+00 1541.9 916 88.9
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 0.0e+00 1509.2 919 87.9
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 0.0e+00 1331.2 938 77.2
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 0.0e+00 1285.4 928 74.7
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 0.0e+00 1282.7 861 78.9
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 0.0e+00 1263.8 920 74.8
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 0.0e+00 1228.0 936 73.0
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 0.0e+00 1197.2 972 68.8
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 0.0e+00 1144.8 847 74.9
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 2.5e-311 1072.0 907 65.5
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 5.2e-309 1064.3 873 65.2
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 3.4e-308 1061.6 873 64.8
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 3.4e-308 1061.6 873 64.7
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 5.4e-306 1054.3 873 64.1
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 3.9e-304 1048.1 873 65.6
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 7.3e-303 1043.9 885 63.7
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 4.0e-301 1038.1 928 62.3
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 1.2e-300 1036.6 927 62.7
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 1.7e-299 1032.7 911 63.1
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 1.4e-298 1029.6 911 61.8
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 2.4e-298 1028.9 897 62.2
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 2.3e-296 1022.3 926 62.1
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 3.9e-296 1021.5 930 60.9
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 2.5e-295 1018.8 864 63.8
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 5.6e-295 1017.7 914 61.7
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 3.6e-294 1015.0 911 62.3
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 3.4e-292 1008.4 897 62.5
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 4.5e-292 1008.1 870 63.8
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 5.8e-292 1007.7 930 60.4
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 4.9e-291 1004.6 914 62.0
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 1.1e-290 1003.4 896 61.2
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 1.4e-290 1003.0 908 62.6
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 9.3e-290 1000.3 897 62.3
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 3.9e-288 995.0 929 60.4
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 5.1e-288 994.6 873 61.7
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 7.4e-287 990.7 907 60.3
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 6.2e-286 987.6 927 60.2
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 1.1e-285 986.9 913 60.5
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 4.0e-285 984.9 930 59.5
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 5.8e-284 981.1 920 58.4
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 8.4e-283 977.2 932 59.7
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 3.2e-282 975.3 859 62.3
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 7.1e-282 974.2 879 60.8
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 3.0e-280 968.8 863 61.3
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 2.5e-279 965.7 900 60.0
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 1.4e-277 959.9 918 58.0
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 2.0e-276 956.1 925 57.2
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.3e-272 942.6 920 56.7
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 1.5e-271 939.9 888 59.2
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 1.6e-270 936.4 888 58.7
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 2.8e-270 935.6 880 57.6
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 9.0e-269 930.6 924 56.2
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 1.5e-268 929.9 928 56.4
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 2.6e-268 929.1 873 59.3
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 2.6e-268 929.1 935 57.3
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 2.6e-268 929.1 862 58.4
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 1.7e-267 926.4 887 58.5
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.3e-264 916.8 900 56.7
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 5.1e-264 914.8 893 56.3
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 1.5e-263 913.3 917 56.8
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 7.4e-263 911.0 871 55.9
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 9.7e-263 910.6 902 55.8
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 1.6e-262 909.8 918 56.3
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 6.3e-262 907.9 875 57.1
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 1.4e-261 906.7 917 55.6
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 5.3e-261 904.8 877 56.3
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 6.9e-261 904.4 861 57.0
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 9.1e-261 904.0 894 56.0
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 9.1e-261 904.0 865 56.6
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 2.0e-260 902.9 917 56.2
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 2.0e-260 902.9 917 56.2
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 6.1e-257 891.3 870 56.4
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 2.3e-256 889.4 886 55.5
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 5.1e-256 888.3 919 54.0
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 5.1e-256 888.3 876 55.9
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 7.7e-252 874.4 863 55.6
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 7.7e-252 874.4 830 59.3
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 6.5e-251 871.3 919 54.8
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 3.6e-249 865.5 916 54.5
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 3.9e-248 862.1 752 61.8
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 1.6e-241 840.1 927 50.9
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 3.6e-241 839.0 855 54.7
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 8.0e-241 837.8 927 51.8
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 8.0e-241 837.8 790 58.4
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 4.8e-238 828.6 920 51.3
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 8.2e-238 827.8 550 78.2
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 6.5e-235 818.1 878 53.1
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.6e-231 806.2 888 51.6
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 5.7e-231 805.1 796 58.3
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 4.5e-228 795.4 913 51.8
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 1.5e-218 763.8 754 57.2
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 4.3e-218 762.3 657 63.6
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 3.7e-214 749.2 804 52.6
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 2.1e-196 690.3 637 59.3
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 7.6e-191 671.8 550 63.8
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 4.3e-178 629.4 611 53.8
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.5e-175 620.9 912 40.7
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 3.5e-172 609.8 901 41.5
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 1.3e-171 607.8 917 41.9
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 1.2e-167 594.7 707 52.8
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 1.6e-164 584.3 885 40.8
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 6.2e-161 572.4 477 63.3
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 6.5e-150 535.8 805 44.8
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 1.1e-144 518.5 899 38.0
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 4.4e-130 469.9 475 58.9
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 3.1e-112 410.6 913 31.4
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 5.5e-109 399.8 390 60.5
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 2.4e-104 384.4 349 65.9
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 9.5e-101 372.5 413 56.2
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 3.6e-100 370.5 954 32.7
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 7.8e-95 352.8 347 51.6
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 1.7e-89 335.1 1052 27.7
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 8.3e-89 332.8 451 48.1
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 5.4e-88 330.1 323 55.1
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 1.1e-85 322.4 677 33.7
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 1.5e-85 322.0 303 56.4
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 1.1e-72 279.3 269 59.9
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.9e-72 278.5 456 43.9
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 3.2e-64 251.1 256 53.1
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 7.8e-63 246.5 181 68.0
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 1.8e-59 235.3 219 59.8
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 4.9e-57 227.3 392 42.3
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 3.4e-50 204.5 165 65.5
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 4.9e-49 200.7 176 60.8
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 6.7e-46 190.3 132 75.8
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 6.7e-46 190.3 266 41.7
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.6e-44 185.7 346 40.5
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 6.1e-39 167.2 132 65.2
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 8.2e-36 156.8 96 84.4
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 9.0e-35 153.3 177 45.2
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 2.8e-28 131.7 129 58.1
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 2.0e-26 125.6 168 52.4
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 1.3e-25 122.9 97 67.0
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 1.9e-24 119.0 126 56.3
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.2e-18 99.8 155 45.2
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 1.7e-17 95.9 139 48.2
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 5.0e-17 94.4 143 46.9
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 1.1e-16 93.2 371 28.3
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 4.4e-13 81.3 60 70.0
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 4.4e-13 81.3 48 79.2
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.3e-12 79.7 78 55.1
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.0e-09 70.1 121 38.8
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 2.2e-09 68.9 68 63.2
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 7.2e-08 63.9 132 31.8


User provided reference genes

Program Settings