Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 1.6e-140 502.7 245 100.0
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 1.9e-125 452.6 245 89.0
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 3.1e-115 418.7 246 81.7
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 2.2e-113 412.5 252 81.0
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 2.2e-113 412.5 252 81.0
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 5.5e-112 407.9 224 90.2
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 1.6e-111 406.4 246 80.9
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 1.3e-110 403.3 246 79.7
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 2.8e-108 395.6 247 79.4
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 2.4e-107 392.5 243 78.6
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 4.2e-104 381.7 225 81.3
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 9.3e-96 354.0 245 71.0
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 2.3e-94 349.4 245 70.6
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 3.9e-94 348.6 244 71.7
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 2.5e-93 345.9 244 69.3
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 4.3e-93 345.1 245 69.4
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 5.7e-93 344.7 245 69.8
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 7.4e-93 344.4 245 70.6
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 7.4e-93 344.4 245 69.8
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 1.3e-92 343.6 245 69.4
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 1.6e-92 343.2 245 70.6
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 4.8e-92 341.7 244 70.9
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 4.8e-92 341.7 245 69.4
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 1.4e-91 340.1 246 67.9
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 3.1e-91 339.0 250 66.8
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 3.1e-91 339.0 244 68.4
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 6.9e-91 337.8 245 69.8
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 9.1e-91 337.4 223 72.6
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 2.6e-90 335.9 245 69.4
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 7.7e-90 334.3 244 68.9
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 1.7e-89 333.2 229 70.7
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 2.9e-89 332.4 245 66.1
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 2.9e-89 332.4 245 66.5
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 2.9e-89 332.4 245 67.8
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 8.5e-89 330.9 242 67.8
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 1.4e-88 330.1 245 67.3
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 7.2e-88 327.8 245 67.8
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 1.2e-87 327.0 244 68.9
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 1.2e-87 327.0 246 65.9
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 2.1e-87 326.2 245 66.1
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 3.6e-87 325.5 245 64.5
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 1.0e-86 323.9 245 66.1
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 1.4e-86 323.6 231 70.1
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 1.4e-86 323.6 245 64.5
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 1.8e-86 323.2 247 66.0
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 3.0e-86 322.4 245 64.1
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 3.0e-86 322.4 245 64.9
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 5.1e-86 321.6 245 64.1
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 6.7e-86 321.2 234 66.2
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 8.8e-86 320.9 245 64.1
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 1.5e-85 320.1 247 64.0
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 2.0e-85 319.7 248 65.7
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 2.0e-85 319.7 222 69.8
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 1.7e-84 316.6 231 68.4
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 2.8e-84 315.8 243 65.4
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 3.7e-84 315.5 231 66.2
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 8.2e-84 314.3 240 63.3
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 8.2e-84 314.3 245 62.4
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 1.1e-83 313.9 240 63.3
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 2.4e-83 312.8 225 66.2
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 3.1e-83 312.4 226 66.4
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 3.1e-83 312.4 255 63.9
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 4.1e-83 312.0 245 61.6
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 4.1e-83 312.0 246 63.0
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 5.3e-83 311.6 239 63.6
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 9.1e-83 310.8 222 68.5
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 1.5e-82 310.1 245 61.2
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 1.5e-82 310.1 250 61.6
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 3.4e-82 308.9 240 62.1
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 4.5e-82 308.5 228 65.4
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 5.9e-82 308.1 243 64.6
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 1.0e-81 307.4 309 54.7
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 1.3e-81 307.0 247 61.5
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 5.0e-81 305.1 240 62.5
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 8.5e-81 304.3 245 62.0
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 2.5e-80 302.8 237 60.3
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 2.3e-78 296.2 229 60.7
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 3.0e-78 295.8 244 60.7
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 5.7e-77 291.6 298 55.7
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 9.7e-77 290.8 238 58.4
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 3.7e-76 288.9 235 61.3
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 8.2e-76 287.7 244 57.4
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 7.0e-75 284.6 226 59.3
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 7.0e-75 284.6 253 55.3
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 1.2e-74 283.9 193 69.9
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 1.6e-74 283.5 187 71.1
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 1.3e-73 280.4 212 61.3
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 1.5e-72 276.9 296 51.4
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 1.9e-72 276.6 263 55.5
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 2.7e-71 272.7 189 68.8
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 3.6e-71 272.3 245 61.2
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 3.3e-69 265.8 195 67.2
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 5.7e-69 265.0 187 67.9
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 7.5e-69 264.6 240 58.3
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 2.1e-63 246.5 198 58.1
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 5.2e-62 241.9 244 50.4
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 4.4e-61 238.8 242 50.0
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 5.7e-61 238.4 238 49.6
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 1.8e-59 233.4 243 49.0
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 2.9e-57 226.1 196 57.7
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 1.2e-53 214.2 152 65.1
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 2.7e-50 203.0 160 63.1
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 3.5e-50 202.6 120 79.2
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 2.0e-34 150.2 234 34.6
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 3.1e-30 136.3 204 38.7
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 1.7e-25 120.6 169 43.2
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 3.9e-25 119.4 169 42.6
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 7.3e-24 115.2 174 35.6
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 1.5e-21 107.5 230 33.5
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 4.6e-18 95.9 69 75.4
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 1.1e-16 91.3 184 32.6
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 1.5e-16 90.9 162 34.0
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 3.3e-16 89.7 136 43.4
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 1.2e-15 87.8 77 53.2
TPR.G17639 Trifolium pratense HOM05D007231 ORTHO05D009024 2.6e-13 80.1 44 77.3
TPR.G23952 Trifolium pratense HOM05D007231 ORTHO05D009024 2.6e-13 80.1 44 77.3
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 2.1e-10 70.5 115 39.1
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 7.8e-10 68.6 66 54.5


User provided reference genes

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