Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 0.0e+00 1244.2 668 100.0
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 4.4e-273 944.5 615 85.2
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 5.7e-212 741.5 607 71.3
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 1.8e-189 666.8 619 63.7
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 1.2e-174 617.5 567 66.7
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 4.5e-169 599.0 691 56.0
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 1.2e-166 590.9 628 59.7
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.5e-164 583.9 631 59.4
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 8.3e-163 578.2 674 55.3
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 6.2e-158 562.0 668 54.8
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.1e-154 551.2 664 53.9
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 3.0e-152 543.1 650 56.5
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 4.0e-149 532.7 711 51.5
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 2.0e-124 450.7 332 75.0
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 4.9e-123 446.0 648 48.5
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 2.7e-113 413.7 688 45.2
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 5.3e-109 399.4 684 43.0
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 2.6e-108 397.1 703 42.0
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 2.9e-107 393.7 654 44.8
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 3.2e-106 390.2 678 43.4
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 1.0e-104 385.2 638 44.8
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 8.7e-104 382.1 648 44.1
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 8.7e-104 382.1 625 44.2
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.1e-103 381.7 633 44.2
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.5e-103 381.3 693 42.9
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 1.9e-103 380.9 634 44.5
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 9.7e-103 378.6 624 43.6
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 6.3e-102 375.9 580 45.2
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.1e-101 375.2 621 44.6
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 4.1e-101 373.2 624 42.9
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 5.9e-100 369.4 626 44.4
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.7e-100 369.0 625 43.8
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 2.2e-99 367.5 622 42.6
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.9e-99 367.1 620 43.2
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 2.7e-97 360.5 675 42.5
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.0e-96 358.6 630 43.5
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 1.0e-96 358.6 609 43.8
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.9e-96 356.7 648 43.2
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 6.7e-96 355.9 621 41.2
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 6.7e-96 355.9 616 42.5
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 2.0e-95 354.4 640 41.7
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.5e-95 354.0 702 40.3
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 4.3e-95 353.2 666 40.8
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 7.4e-95 352.4 646 40.2
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 9.7e-95 352.1 816 35.8
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 9.7e-95 352.1 661 41.0
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.7e-94 351.3 672 41.2
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 8.2e-94 349.0 659 41.0
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 1.1e-93 348.6 621 42.0
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 3.1e-93 347.1 655 40.9
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 6.9e-93 345.9 652 39.9
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 9.1e-93 345.5 652 41.3
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 9.1e-93 345.5 667 41.8
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 1.7e-91 341.3 620 41.6
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 8.5e-91 339.0 624 40.9
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.1e-90 338.6 612 41.3
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 1.1e-90 338.6 637 42.1
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 1.4e-90 338.2 317 62.5
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 2.5e-90 337.4 609 42.9
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.5e-90 337.4 634 41.6
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 4.2e-90 336.7 613 41.3
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 5.5e-90 336.3 627 40.5
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 7.2e-90 335.9 646 39.2
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 7.2e-90 335.9 620 42.1
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.6e-89 334.7 622 41.8
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.4e-88 331.6 614 41.4
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 1.5e-87 328.2 611 39.9
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 1.5e-87 328.2 611 39.9
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 3.3e-87 327.0 642 39.3
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 4.4e-87 326.6 610 40.3
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 4.4e-87 326.6 660 40.0
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 5.7e-87 326.2 617 41.2
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 7.4e-87 325.9 612 41.0
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 1.3e-86 325.1 611 39.6
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 2.2e-86 324.3 771 36.1
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 3.7e-86 323.6 616 39.9
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.8e-86 323.2 610 40.5
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 4.8e-86 323.2 642 41.0
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 6.3e-86 322.8 609 40.7
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.4e-85 321.6 649 39.4
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 3.1e-85 320.5 653 40.0
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 7.0e-85 319.3 622 37.5
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 9.1e-85 318.9 620 39.8
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 3.5e-84 317.0 624 38.8
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 6.5e-83 312.8 642 39.7
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.1e-82 312.0 254 68.5
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 1.1e-82 312.0 614 39.3
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 1.9e-82 311.2 626 38.2
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 7.2e-82 309.3 623 37.7
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 7.2e-82 309.3 652 38.8
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.2e-81 308.5 616 40.7
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.2e-81 308.5 630 37.8
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 4.7e-81 306.6 619 39.7
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.8e-80 304.7 403 50.4
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 1.5e-79 301.6 658 37.4
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 9.7e-79 298.9 284 63.4
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.7e-78 298.1 617 39.7
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 3.7e-78 297.0 610 37.9
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 1.4e-77 295.0 635 36.5
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 1.7e-75 288.1 615 37.7
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 2.2e-75 287.7 640 38.0
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 3.8e-75 287.0 677 36.0
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 6.5e-75 286.2 644 35.9
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 8.5e-75 285.8 647 36.8
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 1.1e-74 285.4 639 37.2
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 7.2e-74 282.7 272 61.8
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 2.7e-73 280.8 609 37.8
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 2.7e-73 280.8 633 37.8
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 3.6e-73 280.4 648 36.1
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.0e-72 278.9 520 40.6
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.3e-72 277.7 633 36.7
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 2.3e-72 277.7 630 37.8
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 3.0e-72 277.3 609 37.8
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 5.2e-72 276.6 398 48.2
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 9.8e-71 272.3 646 35.0
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 3.7e-70 270.4 633 36.8
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 4.1e-69 266.9 614 37.0
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 5.4e-69 266.5 616 36.7
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 1.6e-68 265.0 612 36.9
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 1.5e-66 258.5 538 39.2
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 1.5e-63 248.4 626 36.7
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 1.3e-62 245.4 641 35.9
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 1.1e-61 242.3 617 35.7
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 4.5e-60 236.9 494 38.1
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 1.0e-59 235.7 272 54.8
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.7e-59 235.0 276 54.7
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.7e-59 235.0 276 54.7
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 3.3e-58 230.7 222 64.4
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 4.2e-58 230.3 222 64.4
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 3.0e-56 224.2 632 33.9
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 4.4e-55 220.3 641 32.9
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 4.1e-53 213.8 567 31.2
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 1.1e-50 205.7 494 34.6
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 1.5e-50 205.3 448 37.3
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 3.3e-50 204.1 588 32.8
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 8.9e-48 196.1 616 32.6
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 1.5e-47 195.3 276 44.6
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 4.4e-47 193.7 624 31.2
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 5.8e-47 193.4 446 35.4
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.0e-43 182.6 615 30.1
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.3e-42 177.2 223 47.1
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 7.3e-42 176.4 297 37.7
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 2.1e-41 174.9 607 29.2
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.7e-38 165.2 255 43.1
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 5.1e-35 153.7 278 36.7
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 6.6e-35 153.3 175 57.1
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.1e-32 146.0 271 38.0
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 5.2e-32 143.7 248 40.7
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 6.8e-32 143.3 553 29.1
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 8.4e-30 136.3 179 49.7
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 1.2e-25 122.5 122 59.0
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.4e-24 119.0 187 43.3
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 3.1e-24 117.9 215 40.9
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 4.0e-24 117.5 284 33.5
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.8e-22 110.9 233 39.5
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 4.2e-21 107.5 129 53.5
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 2.1e-20 105.1 494 23.9
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 5.6e-18 97.1 182 37.9
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 6.2e-17 93.6 79 67.1
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 3.1e-16 91.3 91 53.8
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 4.4e-15 87.4 99 51.5
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 9.9e-15 86.3 175 40.0
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 3.8e-14 84.3 76 67.1
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 4.2e-13 80.9 59 66.1
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.2e-12 79.3 105 49.5
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 6.0e-12 77.0 47 74.5
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 1.3e-11 75.9 122 41.0
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 2.3e-11 75.1 120 41.7
Sp2g28160 Schrenkiella parvula HOM05D008017 ORTHO05D009829 2.3e-11 75.1 114 39.5
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.1e-10 72.8 82 53.7
BraA06t26123Z Brassica rapa HOM05D008017 ORTHO05D009829 1.9e-10 72.0 134 35.8
C03p61050 Brassica napus HOM05D008017 ORTHO05D009829 2.5e-10 71.6 135 34.8
BolC3t18367H Brassica oleracea HOM05D008017 ORTHO05D009829 2.5e-10 71.6 135 34.8
A06p31900 Brassica napus HOM05D008017 ORTHO05D009829 5.6e-10 70.5 134 35.8
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 5.6e-10 70.5 124 37.9
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 1.6e-09 68.9 224 28.1
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 2.8e-09 68.2 59 55.9
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 2.8e-09 68.2 59 55.9
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 4.8e-09 67.4 108 45.4
CARHR293790 Cardamine hirsuta HOM05D004018 ORTHO05D009829 1.4e-08 65.9 81 42.0
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 1.8e-08 65.5 70 60.0
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.4e-08 65.1 89 48.3
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 2.4e-08 65.1 389 25.2
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 4.0e-08 64.3 199 31.7
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.3e-06 59.3 78 52.6
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.8e-06 57.8 140 36.4
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 8.4e-06 56.6 71 54.9


User provided reference genes

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