Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 2.1e-110 402.5 224 100.0
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 3.5e-105 385.2 224 86.2
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 5.0e-96 354.8 221 89.6
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 2.5e-95 352.4 227 89.4
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 3.5e-81 305.4 220 69.1
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 7.8e-81 304.3 219 67.6
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.1e-79 300.4 218 66.5
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 1.1e-79 300.4 222 68.5
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 1.9e-79 299.7 218 67.9
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 7.3e-79 297.7 210 70.0
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 9.5e-79 297.4 221 67.0
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 2.8e-78 295.8 218 65.1
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 4.7e-78 295.0 219 66.2
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 4.7e-78 295.0 225 66.2
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 4.7e-78 295.0 217 66.4
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 8.0e-78 294.3 217 77.0
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 1.4e-77 293.5 223 74.0
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 5.2e-77 291.6 219 65.8
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 5.2e-77 291.6 219 67.1
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.2e-76 290.4 216 65.7
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 1.5e-76 290.0 215 76.7
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 3.4e-76 288.9 221 67.4
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 1.3e-75 287.0 213 77.5
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 2.9e-75 285.8 211 66.4
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 2.9e-75 285.8 222 66.7
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 2.9e-75 285.8 217 65.9
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 3.7e-75 285.4 221 65.6
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 3.7e-75 285.4 221 67.0
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 3.7e-75 285.4 217 69.6
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 3.7e-75 285.4 213 77.5
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 6.4e-75 284.6 215 66.5
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 6.4e-75 284.6 215 66.0
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 8.3e-75 284.3 221 65.2
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 1.4e-74 283.5 221 64.7
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 1.4e-74 283.5 221 66.5
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 1.4e-74 283.5 216 76.9
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 1.9e-74 283.1 221 65.2
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 2.4e-74 282.7 216 76.9
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 3.2e-74 282.3 216 65.7
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 3.2e-74 282.3 218 66.5
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 4.1e-74 282.0 213 77.5
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 9.2e-74 280.8 219 63.9
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 1.2e-73 280.4 221 74.7
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 2.0e-73 279.6 218 74.8
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 3.5e-73 278.9 223 73.5
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.6e-73 278.5 218 63.8
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 4.6e-73 278.5 211 65.9
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 6.0e-73 278.1 215 64.7
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 6.0e-73 278.1 218 73.4
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 7.8e-73 277.7 217 63.6
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 1.3e-72 276.9 215 64.2
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 1.7e-72 276.6 217 71.9
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 1.7e-72 276.6 217 65.4
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 2.3e-72 276.2 218 63.3
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.3e-72 276.2 218 63.3
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 2.3e-72 276.2 221 62.4
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 5.0e-72 275.0 216 63.0
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 6.6e-72 274.6 212 63.2
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 6.6e-72 274.6 215 74.9
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 8.6e-72 274.2 224 64.3
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 1.5e-71 273.5 221 72.9
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 1.5e-71 273.5 221 72.9
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 1.5e-71 273.5 225 63.1
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 1.5e-71 273.5 214 72.0
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 2.5e-71 272.7 221 64.3
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 3.3e-71 272.3 214 64.5
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 4.3e-71 271.9 215 73.0
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 5.6e-71 271.6 216 63.4
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 5.6e-71 271.6 221 61.1
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 7.3e-71 271.2 215 74.4
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 1.2e-70 270.4 215 74.4
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 1.6e-70 270.0 216 63.0
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 1.6e-70 270.0 216 63.0
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 1.6e-70 270.0 218 72.0
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 1.6e-70 270.0 215 64.7
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 2.8e-70 269.2 215 62.8
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 8.1e-70 267.7 215 74.0
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.1e-69 267.3 221 61.5
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 1.4e-69 266.9 215 61.9
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-69 266.9 216 62.5
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-69 266.9 216 62.5
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-69 266.9 216 62.5
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-69 266.9 216 62.5
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-69 266.9 216 62.5
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 2.3e-69 266.2 215 64.2
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 3.1e-69 265.8 214 73.8
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 4.0e-69 265.4 219 61.6
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 8.9e-69 264.2 221 72.9
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 2.0e-68 263.1 215 62.8
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 2.0e-68 263.1 218 60.1
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 2.0e-68 263.1 223 59.2
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 2.6e-68 262.7 218 60.1
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 1.7e-67 260.0 228 68.4
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 1.7e-67 260.0 228 68.4
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 4.9e-67 258.5 214 58.9
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 1.4e-66 256.9 222 58.1
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 2.4e-66 256.1 221 71.5
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 1.7e-64 250.0 220 61.4
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 1.7e-64 250.0 217 58.5
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 3.9e-64 248.8 217 58.1
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.5e-63 246.9 218 70.6
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 1.9e-63 246.5 218 58.7
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 2.5e-63 246.1 217 57.6
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 7.3e-63 244.6 217 65.9
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 2.8e-62 242.7 217 59.0
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 1.1e-61 240.7 207 57.0
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 2.3e-61 239.6 139 84.9
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 5.2e-61 238.4 215 68.4
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 3.4e-60 235.7 214 56.5
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 3.4e-60 235.7 223 56.1
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 4.4e-60 235.3 220 53.6
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.3e-59 233.8 220 57.3
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.3e-59 233.8 220 57.3
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 3.7e-59 232.3 214 56.5
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 7.1e-58 228.0 157 72.6
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 2.1e-57 226.5 210 56.2
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 6.2e-54 214.9 139 76.3
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 1.4e-53 213.8 155 69.0
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 1.4e-53 213.8 216 49.1
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 2.4e-53 213.0 210 49.5
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.1e-53 212.6 215 65.6
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 8.9e-53 211.1 185 58.4
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.2e-52 210.7 158 68.4
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 2.0e-52 209.9 225 61.3
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 3.4e-52 209.1 214 48.6
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 1.6e-49 200.3 168 60.1
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 4.6e-49 198.7 161 68.9
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 2.5e-47 193.0 218 60.1
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 7.3e-47 191.4 133 69.9
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 1.1e-45 187.6 159 59.1
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 2.4e-45 186.4 221 45.2
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 4.4e-44 182.2 128 66.4
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 3.8e-43 179.1 163 58.3
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 4.2e-42 175.6 215 59.1
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 2.4e-37 159.8 221 46.2
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 1.6e-30 137.1 97 89.7
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 4.8e-30 135.6 94 70.2
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 8.4e-27 124.8 97 67.0
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 1.0e-11 74.7 201 30.8
PRCOL_00003536 Prasinoderma coloniale HOM05D003144 ORTHO05D003539 1.3e-06 57.8 158 32.3


User provided reference genes

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