Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 7.9e-134 480.7 293 100.0
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 2.0e-105 386.3 315 69.8
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 2.9e-104 382.5 293 73.0
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 4.9e-59 232.3 240 62.1
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 1.2e-44 184.5 300 49.3
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 7.6e-44 181.8 308 47.1
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 1.1e-42 177.9 307 46.3
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 2.4e-42 176.8 269 48.0
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 7.6e-36 155.2 274 40.9
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 1.6e-33 147.5 264 53.4
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 1.0e-32 144.8 273 47.3
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 1.4e-29 134.4 115 67.8
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 1.8e-29 134.0 279 39.8
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 3.1e-29 133.3 238 43.3
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 3.1e-29 133.3 283 37.1
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 4.0e-29 132.9 274 43.8
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 5.8e-28 129.0 287 34.5
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 7.6e-28 128.6 275 38.9
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 1.7e-27 127.5 187 49.2
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 2.2e-27 127.1 274 40.1
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 2.9e-27 126.7 292 39.0
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 5.0e-27 125.9 294 40.1
Ca_11442_v3 Cicer arietinum L. HOM05D004973 ORTHO05D006119 1.1e-26 124.8 295 37.6
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 5.5e-26 122.5 289 37.4
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 9.3e-26 121.7 275 38.2
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 1.2e-25 121.3 185 47.0
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 4.6e-25 119.4 282 36.2
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 6.1e-25 119.0 283 42.4
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 2.3e-24 117.1 276 37.3
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 6.7e-24 115.5 324 33.3
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.9e-23 114.0 286 36.4
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 4.3e-23 112.8 273 42.1
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 7.4e-23 112.1 286 37.1
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 1.3e-22 111.3 273 39.2
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.3e-22 111.3 300 33.7
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.2e-22 110.5 273 41.8
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 8.2e-22 108.6 302 33.8
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 1.1e-21 108.2 283 35.3
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.1e-21 108.2 265 38.5
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.1e-21 108.2 286 37.4
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 1.1e-21 108.2 229 50.7
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 1.8e-21 107.5 283 41.3
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 1.8e-21 107.5 186 43.0
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 2.4e-21 107.1 279 32.6
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.0e-20 104.0 258 34.5
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 3.4e-20 103.2 279 31.5
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.5e-20 102.8 291 32.0
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 5.0e-19 99.4 283 33.9
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 6.5e-19 99.0 274 33.2
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.1e-18 98.2 268 35.8
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.4e-18 97.8 290 33.1
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 2.5e-18 97.1 274 34.3
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 9.4e-18 95.1 287 34.1
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 2.1e-17 94.0 272 37.9
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 4.6e-17 92.8 264 30.3
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 7.9e-17 92.0 297 35.0
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 1.0e-16 91.7 287 32.1
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 1.4e-16 91.3 295 30.8
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 2.3e-16 90.5 281 34.2
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 3.9e-16 89.7 280 30.0
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 3.9e-16 89.7 249 36.1
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 3.9e-16 89.7 98 56.1
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 8.8e-16 88.6 259 34.7
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.1e-15 88.2 90 56.7
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 1.5e-15 87.8 253 35.2
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 2.0e-15 87.4 257 38.5
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 2.0e-15 87.4 271 31.4
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.3e-15 86.7 101 54.5
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 3.3e-15 86.7 259 35.5
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 7.4e-15 85.5 333 34.8
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 7.4e-15 85.5 87 56.3
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 7.4e-15 85.5 184 34.8
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 9.7e-15 85.1 94 52.1
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 9.7e-15 85.1 265 32.1
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.2e-14 84.0 85 56.5
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 3.7e-14 83.2 88 54.5
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 3.7e-14 83.2 93 55.9
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 8.2e-14 82.0 90 54.4
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 1.1e-13 81.6 320 34.4
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 2.4e-13 80.5 287 31.4
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 2.4e-13 80.5 78 59.0
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.1e-13 80.1 81 58.0
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 5.3e-13 79.3 92 55.4
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 5.3e-13 79.3 92 55.4
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 5.3e-13 79.3 90 52.2
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 6.9e-13 79.0 65 66.2
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 9.1e-13 78.6 96 54.2
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 1.2e-12 78.2 75 62.7
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 1.2e-12 78.2 288 35.1
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 1.5e-12 77.8 97 48.5
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 1.5e-12 77.8 84 58.3
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 2.0e-12 77.4 73 61.6
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 2.0e-12 77.4 66 66.7
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 2.6e-12 77.0 73 61.6
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 5.9e-12 75.9 84 57.1
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 5.9e-12 75.9 66 65.2
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 5.9e-12 75.9 262 30.9
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 7.7e-12 75.5 66 65.2
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 7.7e-12 75.5 258 37.6
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 1.7e-11 74.3 95 53.7
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 1.7e-11 74.3 178 38.2
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 1.7e-11 74.3 96 50.0
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.7e-11 74.3 162 37.7
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 2.2e-11 73.9 66 63.6
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 2.2e-11 73.9 278 35.3
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 2.9e-11 73.6 260 31.2
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 2.9e-11 73.6 259 43.6
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 2.9e-11 73.6 91 48.4
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 2.9e-11 73.6 168 36.9
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 3.8e-11 73.2 62 64.5
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 5.0e-11 72.8 62 64.5
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 5.0e-11 72.8 62 64.5
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 1.1e-10 71.6 62 64.5
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 1.1e-10 71.6 62 64.5
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.9e-10 70.9 276 28.6
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.5e-10 70.5 278 29.9
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 4.2e-10 69.7 263 34.2
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 4.2e-10 69.7 81 54.3
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 9.4e-10 68.6 92 47.8
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 1.2e-09 68.2 174 35.1
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 2.7e-09 67.0 172 36.6
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 3.6e-09 66.6 302 28.5
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 7.9e-09 65.5 225 28.9
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 1.0e-08 65.1 62 54.8
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 1.8e-08 64.3 71 54.9
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 2.3e-08 63.9 277 29.2
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 8.8e-08 62.0 74 47.3
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 8.8e-08 62.0 265 29.4
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 2.0e-07 60.8 68 51.5
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 3.3e-07 60.1 261 29.1
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 9.7e-07 58.5 261 29.5
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 9.7e-07 58.5 225 29.8
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 2.8e-06 57.0 89 47.2


User provided reference genes

Program Settings