Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 8.0e-123 443.7 218 100.0
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 4.1e-103 378.3 266 72.6
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 1.0e-101 373.6 213 85.4
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 1.7e-101 372.9 217 82.9
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 4.7e-91 338.2 214 76.6
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 1.1e-82 310.5 219 72.6
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 2.3e-77 292.7 245 62.9
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.9e-76 289.7 220 62.7
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 3.3e-76 288.9 220 62.3
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 7.3e-76 287.7 213 65.7
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 9.6e-76 287.3 221 63.3
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 6.9e-74 281.2 220 63.2
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 3.4e-73 278.9 218 61.0
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 4.4e-73 278.5 226 61.9
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 9.9e-73 277.3 221 60.2
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 2.2e-72 276.2 217 62.2
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 2.2e-72 276.2 214 62.1
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.9e-71 273.1 215 60.9
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 3.2e-71 272.3 217 59.4
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 3.2e-71 272.3 222 61.7
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 4.2e-71 271.9 212 65.1
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 1.6e-70 270.0 247 53.8
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 2.7e-70 269.2 221 57.9
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 2.7e-70 269.2 217 60.4
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 4.6e-70 268.5 219 59.8
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 1.7e-69 266.5 188 65.4
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 4.3e-68 261.9 187 65.8
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 5.6e-68 261.5 219 58.4
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 5.6e-68 261.5 218 60.1
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 4.8e-67 258.5 219 57.5
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 1.1e-66 257.3 215 56.7
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 1.4e-66 256.9 189 66.1
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 1.8e-66 256.5 219 58.4
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.0e-66 255.4 217 58.1
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 1.2e-65 253.8 209 58.9
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 2.0e-65 253.1 219 55.3
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 9.9e-65 250.8 218 57.3
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 9.9e-65 250.8 215 54.9
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 9.9e-65 250.8 256 50.4
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.3e-64 250.4 218 53.7
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 1.7e-64 250.0 215 57.7
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 1.7e-64 250.0 221 56.6
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 2.2e-64 249.6 215 55.3
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.9e-64 249.2 216 56.9
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 4.9e-64 248.4 222 55.0
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 4.9e-64 248.4 193 60.6
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 6.4e-64 248.1 219 57.5
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.1e-63 247.3 215 56.7
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 3.2e-63 245.7 215 55.8
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 5.4e-63 245.0 215 55.8
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 7.1e-63 244.6 220 55.9
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 9.3e-63 244.2 214 56.1
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 1.6e-62 243.4 217 56.7
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 2.7e-62 242.7 214 55.6
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 7.9e-62 241.1 214 53.7
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 7.9e-62 241.1 200 57.5
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 7.9e-62 241.1 196 60.7
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.0e-61 240.7 190 58.9
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.8e-61 240.0 212 54.2
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.8e-61 240.0 222 55.9
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 8.7e-61 237.7 209 53.1
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.1e-60 237.3 204 54.4
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 1.1e-60 237.3 216 53.7
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 3.3e-60 235.7 213 53.5
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 3.3e-60 235.7 209 54.5
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 3.3e-60 235.7 214 56.5
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 4.3e-60 235.3 221 53.8
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 1.6e-59 233.4 221 53.8
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.6e-59 232.3 218 52.8
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 4.8e-59 231.9 191 56.5
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 6.2e-59 231.5 215 51.2
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.1e-58 230.7 214 53.3
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 6.9e-58 228.0 214 52.8
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 6.9e-58 228.0 235 49.4
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 1.5e-57 226.9 222 53.2
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 1.5e-57 226.9 227 53.7
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 2.0e-57 226.5 215 49.8
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 5.8e-57 224.9 204 54.4
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 5.8e-57 224.9 223 51.6
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 5.8e-57 224.9 213 52.1
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 5.8e-57 224.9 223 51.1
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 5.8e-57 224.9 236 50.4
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 9.9e-57 224.2 208 52.4
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 1.3e-56 223.8 211 49.8
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 1.7e-56 223.4 193 53.4
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.2e-56 223.0 212 52.4
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 2.9e-56 222.6 212 52.8
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 2.9e-56 222.6 205 53.7
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 4.9e-56 221.9 222 50.0
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 6.4e-56 221.5 215 52.6
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 1.1e-55 220.7 203 56.2
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.2e-55 219.2 219 50.7
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.2e-55 219.2 235 49.4
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 9.3e-55 217.6 208 53.4
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 2.7e-54 216.1 220 51.8
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 3.5e-54 215.7 204 50.0
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.5e-54 215.7 226 48.7
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 3.5e-54 215.7 212 50.5
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 6.0e-54 214.9 219 51.1
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 6.0e-54 214.9 212 50.5
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 6.0e-54 214.9 247 46.6
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 1.0e-53 214.2 178 56.7
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.0e-53 214.2 218 47.2
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.3e-53 213.8 196 51.5
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.8e-53 213.4 220 51.8
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.8e-53 213.4 220 51.8
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.3e-53 213.0 205 51.7
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 5.1e-53 211.8 212 50.0
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.1e-52 210.7 221 46.6
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.5e-52 210.3 247 45.7
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 1.9e-52 209.9 227 48.9
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 3.3e-52 209.1 212 49.5
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 4.3e-52 208.8 204 49.0
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 9.6e-52 207.6 212 49.5
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 1.3e-51 207.2 212 49.5
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.8e-51 206.1 204 51.0
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.8e-51 205.3 220 50.9
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 6.2e-51 204.9 220 49.5
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 8.1e-51 204.5 222 47.3
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 1.1e-50 204.1 151 61.6
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.4e-50 203.8 201 51.7
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 9.0e-50 201.1 189 51.9
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.0e-48 197.6 228 45.2
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.2e-48 196.4 208 46.2
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 1.1e-47 194.1 223 46.2
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 1.3e-45 187.2 139 60.4
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 1.5e-44 183.7 213 46.5
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 3.3e-44 182.6 213 46.0
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 3.3e-44 182.6 200 45.5
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 2.1e-43 179.9 182 48.4
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 4.8e-43 178.7 212 44.8
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 4.8e-43 178.7 218 43.6
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 6.3e-43 178.3 199 44.2
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 2.4e-42 176.4 197 42.1
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 5.3e-42 175.3 206 43.7
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.2e-41 174.1 229 40.6
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 1.2e-41 174.1 220 43.2
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.6e-41 172.9 216 40.3
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 3.4e-41 172.6 220 42.7
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 5.9e-41 171.8 215 43.7
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 2.9e-40 169.5 196 48.0
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 5.0e-40 168.7 135 55.6
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 7.2e-39 164.9 212 43.9
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 7.2e-39 164.9 184 42.9
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 3.6e-38 162.5 212 43.4
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.0e-37 161.0 206 43.7
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 8.7e-37 157.9 217 39.6
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 1.5e-36 157.1 188 45.2
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.3e-36 156.0 139 54.0
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 5.7e-36 155.2 200 43.5
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 5.7e-36 155.2 200 43.5
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 1.4e-34 150.6 141 51.1
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 3.4e-33 146.0 207 39.1
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 5.9e-33 145.2 226 39.8
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 1.1e-28 131.0 156 45.5
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.8e-27 126.3 142 44.4
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 2.2e-24 116.7 217 32.3
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 6.5e-24 115.2 181 34.8
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 8.5e-24 114.8 115 49.6
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 2.5e-23 113.2 219 33.8
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 6.7e-21 105.1 145 37.9
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 9.7e-20 101.3 144 35.4
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 7.7e-17 91.7 104 45.2
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 3.2e-15 86.3 158 31.6
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 3.2e-15 86.3 69 55.1
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 4.0e-13 79.3 73 54.8
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.3e-12 76.3 57 59.6
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 5.7e-12 75.5 64 54.7
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 1.7e-11 73.9 76 50.0
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 5.0e-08 62.4 58 48.3
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.1e-07 61.2 86 37.2
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 1.5e-07 60.8 58 46.6
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 2.5e-07 60.1 58 46.6
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 1.2e-06 57.8 106 35.8


User provided reference genes

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