Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 3.1e-257 891.3 465 100.0
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 9.6e-243 843.2 465 93.3
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 4.8e-234 814.3 465 91.2
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 2.9e-223 778.5 473 85.8
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 1.1e-222 776.5 471 86.6
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 4.7e-221 771.2 470 86.2
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 4.4e-219 764.6 470 85.7
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 7.4e-219 763.8 468 87.0
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 1.0e-212 743.4 471 83.0
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 4.5e-208 728.0 442 85.7
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 1.3e-199 699.9 470 78.5
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 8.5e-199 697.2 469 78.7
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 5.5e-198 694.5 447 81.7
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 1.2e-195 686.8 447 81.0
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 4.4e-195 684.9 482 75.9
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 5.7e-195 684.5 469 76.8
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 1.7e-194 682.9 447 79.9
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.7e-194 682.9 469 78.0
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 4.9e-194 681.4 471 76.9
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 6.3e-194 681.0 469 77.0
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.8e-193 679.5 447 80.1
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 7.0e-193 677.6 477 76.5
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 2.0e-192 676.0 425 82.8
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 5.9e-192 674.5 469 77.4
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 5.9e-192 674.5 464 76.9
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 7.7e-192 674.1 471 75.8
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 6.6e-191 671.0 447 78.7
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 6.6e-191 671.0 466 74.7
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 4.2e-190 668.3 472 75.2
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 8.0e-189 664.1 467 75.6
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 8.0e-189 664.1 469 76.8
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 1.0e-188 663.7 469 75.1
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.4e-188 663.3 454 76.9
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.8e-188 662.9 443 77.4
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 1.8e-188 662.9 471 73.5
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 3.0e-188 662.1 472 74.8
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 8.9e-188 660.6 469 75.3
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 8.9e-188 660.6 451 77.8
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 1.2e-187 660.2 469 75.7
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 1.5e-187 659.8 420 83.6
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.5e-187 659.8 422 84.8
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 2.6e-187 659.1 448 76.8
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 4.4e-187 658.3 470 74.7
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 9.8e-187 657.1 480 73.5
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 2.9e-186 655.6 431 78.2
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 3.7e-186 655.2 453 75.7
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 6.3e-186 654.4 509 71.3
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 1.1e-185 653.7 423 79.4
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 1.4e-185 653.3 435 78.9
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 1.8e-185 652.9 450 76.0
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 1.8e-185 652.9 435 79.1
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 1.8e-185 652.9 435 78.9
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 4.1e-185 651.7 441 76.6
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 5.4e-185 651.4 448 76.1
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 1.6e-184 649.8 441 77.1
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.6e-184 649.8 442 77.4
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 7.8e-184 647.5 425 79.5
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 7.8e-184 647.5 470 73.8
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.0e-183 647.1 423 79.7
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 2.5e-182 642.5 470 73.0
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 1.6e-181 639.8 470 73.2
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 2.8e-181 639.0 440 75.7
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 2.8e-181 639.0 468 72.4
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 2.8e-181 639.0 470 73.2
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.8e-181 639.0 472 73.1
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 4.7e-181 638.3 434 75.3
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 4.7e-181 638.3 470 73.0
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 6.1e-181 637.9 472 72.7
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 8.0e-181 637.5 468 72.9
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.4e-180 636.7 472 72.7
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 1.8e-180 636.3 474 71.7
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 2.3e-180 636.0 458 73.1
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 2.3e-180 636.0 468 72.4
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 8.9e-180 634.0 446 74.7
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 1.2e-179 633.6 468 72.2
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 2.0e-179 632.9 430 75.8
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 5.8e-179 631.3 458 72.7
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 9.8e-179 630.6 462 72.5
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 2.9e-178 629.0 435 75.6
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 2.9e-178 629.0 464 72.2
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 6.4e-178 627.9 462 72.3
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 1.1e-177 627.1 468 70.7
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 2.7e-176 622.5 473 72.1
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 3.5e-176 622.1 425 76.0
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 6.0e-176 621.3 399 81.2
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 3.0e-175 619.0 409 79.2
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 5.0e-175 618.2 422 77.0
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.5e-174 616.7 457 72.6
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 3.3e-174 615.5 423 77.3
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 9.5e-174 614.0 490 68.2
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 2.8e-173 612.5 443 71.6
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 6.8e-172 607.8 406 78.1
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 1.5e-171 606.7 478 69.9
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 2.0e-171 606.3 483 68.3
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 7.1e-169 597.8 441 71.9
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 7.8e-168 594.3 546 62.5
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 1.2e-165 587.0 422 71.3
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 1.2e-165 587.0 404 78.2
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 2.7e-160 569.3 423 70.0
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 4.6e-160 568.5 423 72.8
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 8.6e-159 564.3 320 93.1
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 4.4e-155 552.0 409 71.9
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 1.3e-154 550.4 430 67.7
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 4.2e-153 545.4 424 67.9
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.7e-151 540.0 393 74.6
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 3.0e-151 539.3 386 70.5
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.3e-133 480.7 345 76.8
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.6e-133 480.3 435 59.8
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.0e-131 473.4 478 59.4
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 2.3e-127 459.9 360 66.1
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 5.1e-127 458.8 403 65.5
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 1.4e-124 450.7 437 57.9
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 4.2e-121 439.1 329 68.7
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 6.9e-116 421.8 437 55.4
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 1.4e-103 380.9 388 57.0
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.8e-103 380.6 238 84.0
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 4.2e-81 306.2 241 69.3
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 2.6e-78 297.0 229 70.7
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 8.3e-77 292.0 147 98.6
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.8e-76 290.8 195 76.9
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 5.4e-76 289.3 202 75.2
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 7.5e-70 268.9 204 69.6
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 1.0e-63 248.4 218 59.2
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 6.8e-63 245.7 182 74.7
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 7.8e-51 205.7 488 35.2
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 6.8e-47 192.6 124 75.8
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.7e-35 154.1 140 64.3
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 4.6e-35 153.3 137 65.0
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 5.3e-31 139.8 149 53.7
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 9.0e-31 139.0 264 38.3
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 2.0e-30 137.9 102 68.6
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 4.5e-30 136.7 101 73.3
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 1.3e-29 135.2 158 54.4
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 5.4e-28 129.8 264 36.4
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 5.1e-26 123.2 127 52.8
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 7.6e-22 109.4 106 56.6
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 2.3e-18 97.8 121 52.9
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 2.8e-16 90.9 87 54.0
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 1.4e-15 88.6 73 65.8
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 2.2e-13 81.3 46 73.9
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 2.2e-13 81.3 46 73.9
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 6.5e-13 79.7 89 53.9
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-12 79.0 76 56.6
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 2.5e-12 77.8 44 81.8
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 4.2e-12 77.0 72 54.2
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 5.5e-12 76.6 64 64.1
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 1.6e-11 75.1 64 62.5
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 4.6e-11 73.6 64 60.9
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 4.6e-11 73.6 64 60.9
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 4.6e-11 73.6 64 60.9
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 4.6e-11 73.6 64 60.9
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 4.6e-11 73.6 63 61.9
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 4.6e-11 73.6 64 60.9
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 4.6e-11 73.6 64 60.9
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 4.6e-11 73.6 64 60.9
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 7.9e-11 72.8 79 54.4
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 7.9e-11 72.8 64 59.4
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 7.9e-11 72.8 64 60.9
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 1.0e-10 72.4 61 52.5
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 1.9e-09 68.2 76 50.0
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 2.5e-09 67.8 177 31.6
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 2.5e-09 67.8 165 34.5
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 9.6e-09 65.9 66 57.6
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 4.1e-07 60.5 48 66.7
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 6.9e-07 59.7 43 72.1
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 6.9e-07 59.7 65 52.3
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 3.4e-06 57.4 39 71.8


User provided reference genes

Program Settings