Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G157600 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 9.4e-69 263.5 138 100.0
VMungo0720G0839 Vigna mungo HOM05D001886 ORTHO05D004007 2.5e-45 185.7 122 82.0
Glyma.10G043800 Glycine max HOM05D001886 ORTHO05D004007 4.2e-37 158.3 108 79.6
Glyma.13G131500 Glycine max HOM05D001886 ORTHO05D004007 1.6e-36 156.4 108 79.6
Glyma.19G172900 Glycine max HOM05D001886 ORTHO05D004007 2.4e-24 115.9 120 53.3
Lj5g0001892 Lotus japonicus HOM05D001886 ORTHO05D004007 1.6e-23 113.2 120 58.3
Phvul.001G169700 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 1.3e-22 110.2 116 53.4
Glyma.03G172000 Glycine max HOM05D001886 ORTHO05D004007 6.6e-22 107.8 116 51.7
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.2e-20 103.6 119 53.8
Medtr7g099860 Medicago truncatula HOM05D001886 ORTHO05D004007 1.6e-20 103.2 114 55.3
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 2.8e-20 102.4 119 52.9
TPR.G21449 Trifolium pratense HOM05D001886 ORTHO05D004007 8.0e-20 100.9 116 56.0
CiPaw.10G143600 Carya illinoinensis HOM05D001886 ORTHO05D004007 1.4e-19 100.1 98 59.2
Hma1.2p1_1481F.1_g286140 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 2.3e-19 99.4 114 49.1
Hma1.2p1_1707F.1_g298490 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 2.3e-19 99.4 114 49.1
Lalb_Chr06g0171021 Lupinus albus HOM05D001886 ORTHO05D004007 5.2e-19 98.2 114 54.4
Lj1g0019269 Lotus japonicus HOM05D001886 ORTHO05D004007 6.8e-19 97.8 118 51.7
CSS0007004 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 1.5e-18 96.7 108 50.9
CSS0016629 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 1.5e-18 96.7 108 50.9
PGR004G0749 Punica granatum HOM05D001886 ORTHO05D004007 1.5e-18 96.7 116 50.0
Lj1g0006648 Lotus japonicus HOM05D001886 ORTHO05D004007 2.6e-18 95.9 120 50.8
Ca_08781_v3 Cicer arietinum L. HOM05D001886 ORTHO05D004007 7.5e-18 94.4 114 50.9
VMungo1383G2619 Vigna mungo HOM05D001886 ORTHO05D004007 2.2e-17 92.8 115 47.8
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 2.9e-17 92.4 131 46.6
Psat3g049240 Pisum sativum HOM05D001886 ORTHO05D004007 2.9e-17 92.4 110 54.5
QL05p010714 Quercus lobata HOM05D001886 ORTHO05D004007 2.9e-17 92.4 111 53.2
QL07p047484 Quercus lobata HOM05D001886 ORTHO05D004007 2.9e-17 92.4 111 53.2
HanXRQChr13g0398891 Helianthus annuus HOM05D001886 ORTHO05D004007 3.7e-17 92.0 103 49.5
Manes.09G087200 Manihot esculenta HOM05D001886 ORTHO05D004007 3.7e-17 92.0 104 52.9
Prupe.6G251200 Prunus persica HOM05D001886 ORTHO05D004007 3.7e-17 92.0 101 57.4
CANSAT35G1619 Cannabis sativa HOM05D001886 ORTHO05D004007 4.9e-17 91.7 105 50.5
CiPaw.09G189700 Carya illinoinensis HOM05D001886 ORTHO05D004007 4.9e-17 91.7 122 49.2
Lalb_Chr01g0019251 Lupinus albus HOM05D001886 ORTHO05D004007 4.9e-17 91.7 115 53.0
Nn2g12929 Nelumbo nucifera HOM05D001886 ORTHO05D004007 6.4e-17 91.3 105 52.4
Cfa017419 Carpinus fangiana HOM05D001886 ORTHO05D004007 1.4e-16 90.1 107 51.4
MD12G1139400 Malus domestica HOM05D001886 ORTHO05D004007 2.4e-16 89.4 126 47.6
Haze_20751 Corylus avellana HOM05D001886 ORTHO05D004007 3.2e-16 89.0 102 52.0
Lsat_1_v5_gn_6_31360 Lactuca sativa HOM05D001886 ORTHO05D004007 3.2e-16 89.0 108 47.2
RcHm_v2.0_Chr3g0467161 Rosa chinensis HOM05D001886 ORTHO05D004007 3.2e-16 89.0 97 54.6
ECA233G1369 Erigeron canadensis HOM05D001886 ORTHO05D004007 4.1e-16 88.6 113 47.8
MD04G1123500 Malus domestica HOM05D001886 ORTHO05D004007 4.1e-16 88.6 108 51.9
Sabra06G0063400 Salix brachista HOM05D001886 ORTHO05D004007 7.0e-16 87.8 105 54.3
SGA_v2.0_scaffold126G33809 Striga asiatica HOM05D001886 ORTHO05D004007 7.0e-16 87.8 102 52.0
ClCG04G008370 Citrullus lanatus HOM05D001886 ORTHO05D004007 1.2e-15 87.0 110 50.0
Rhsim05G0188300 Rhododendron simsii HOM05D001886 ORTHO05D004007 1.2e-15 87.0 101 53.5
MELO3C003112.2 Cucumis melo HOM05D001886 ORTHO05D004007 1.6e-15 86.7 110 50.0
CsaV3_4G024780 Cucumis sativus L. HOM05D001886 ORTHO05D004007 1.6e-15 86.7 110 50.0
PSO339G5886 Papaver somniferum HOM05D001886 ORTHO05D004007 1.6e-15 86.7 121 43.8
Nn2g10427 Nelumbo nucifera HOM05D001886 ORTHO05D004007 2.0e-15 86.3 100 51.0
TAR623G0309 Trochodendron aralioides HOM05D001886 ORTHO05D004007 2.0e-15 86.3 100 51.0
Haze_24047 Corylus avellana HOM05D001886 ORTHO05D004007 2.7e-15 85.9 124 39.5
Duzib150G0204 Durio zibethinus HOM05D001886 ORTHO05D004007 4.6e-15 85.1 104 46.2
FvH4_6g14180 Fragaria vesca HOM05D001886 ORTHO05D004007 7.8e-15 84.3 97 52.6
FAN05G2305 Fragaria x ananassa HOM05D001886 ORTHO05D004007 7.8e-15 84.3 97 52.6
FAN14G5259 Fragaria x ananassa HOM05D001886 ORTHO05D004007 7.8e-15 84.3 97 52.6
MBI14_g24316_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D004007 7.8e-15 84.3 109 48.6
FAN09G0249 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.0e-14 84.0 97 51.5
Gohir.D07G100500 Gossypium hirsutum HOM05D001886 ORTHO05D004007 1.0e-14 84.0 101 48.5
Gorai.001G108400 Gossypium raimondii HOM05D001886 ORTHO05D004007 1.0e-14 84.0 101 48.5
Duzib093G1578 Durio zibethinus HOM05D001886 ORTHO05D004007 2.3e-14 82.8 99 51.5
Psat3g049080 Pisum sativum HOM05D001886 ORTHO05D004007 2.3e-14 82.8 105 52.4
SalBow4G1303 Salvia bowleyana HOM05D001886 ORTHO05D004007 3.0e-14 82.4 100 49.0
CiPaw.13G097900 Carya illinoinensis HOM05D001886 ORTHO05D004007 3.9e-14 82.0 99 46.5
Gohir.D09G153200 Gossypium hirsutum HOM05D001886 ORTHO05D004007 3.9e-14 82.0 101 51.5
Gorai.006G174700 Gossypium raimondii HOM05D001886 ORTHO05D004007 3.9e-14 82.0 101 51.5
Eucgr.A01246 Eucalyptus grandis HOM05D001886 ORTHO05D004007 5.0e-14 81.6 116 49.1
Gohir.A07G096100 Gossypium hirsutum HOM05D001886 ORTHO05D004007 5.0e-14 81.6 100 48.0
Thecc.05G043600 Theobroma cacao HOM05D001886 ORTHO05D004007 6.6e-14 81.3 107 46.7
TAR636G3006 Trochodendron aralioides HOM05D001886 ORTHO05D004007 6.6e-14 81.3 99 49.5
Atru.chr3.3836 Acer truncatum HOM05D001886 ORTHO05D004007 8.6e-14 80.9 98 50.0
Migut.J00350 Erythranthe guttata HOM05D001886 ORTHO05D004007 8.6e-14 80.9 97 47.4
Gohir.A09G157900 Gossypium hirsutum HOM05D001886 ORTHO05D004007 8.6e-14 80.9 101 50.5
Gorai.003G135300 Gossypium raimondii HOM05D001886 ORTHO05D004007 8.6e-14 80.9 101 44.6
DCAR_009245 Daucus carota HOM05D001886 ORTHO05D004007 1.1e-13 80.5 106 45.3
Cfa011462 Carpinus fangiana HOM05D001886 ORTHO05D004007 1.5e-13 80.1 115 44.3
Potri.006G083800 Populus trichocarpa HOM05D001886 ORTHO05D004007 1.5e-13 80.1 105 50.5
THA.LOC104800648 Tarenaya hassleriana HOM05D001886 ORTHO05D004007 1.5e-13 80.1 100 43.0
Gohir.D03G128600 Gossypium hirsutum HOM05D001886 ORTHO05D004007 1.9e-13 79.7 101 43.6
Aqoxy2G02038 Aquilegia oxysepala HOM05D001886 ORTHO05D004007 2.5e-13 79.3 99 47.5
BcaB01g03772 Brassica carinata HOM05D001886 ORTHO05D004007 4.3e-13 78.6 107 42.1
Ciclev10030058m.g Citrus clementina HOM05D001886 ORTHO05D004007 4.3e-13 78.6 101 47.5
AUR62041758 Chenopodium quinoa HOM05D001886 ORTHO05D004007 5.6e-13 78.2 108 48.1
CiPaw.09G189600 Carya illinoinensis HOM05D001886 ORTHO05D004007 7.3e-13 77.8 105 42.9
COL.COLO4_14848 Corchorus olitorius HOM05D001886 ORTHO05D004007 7.3e-13 77.8 99 47.5
SalBow4G2596 Salvia bowleyana HOM05D001886 ORTHO05D004007 9.5e-13 77.4 96 49.0
A03p20700 Brassica napus HOM05D001886 ORTHO05D004007 1.2e-12 77.0 106 43.4
BraA03t11311Z Brassica rapa HOM05D001886 ORTHO05D004007 1.2e-12 77.0 106 43.4
Prupe.6G081800 Prunus persica HOM05D001886 ORTHO05D004007 1.2e-12 77.0 99 47.5
HPP92_006604 Vanilla planifolia HOM05D001886 ORTHO05D004007 1.2e-12 77.0 99 45.5
MD03G1097600 Malus domestica HOM05D001886 ORTHO05D004007 1.6e-12 76.6 101 44.6
PGSC0003DMG400008923 Solanum tuberosum HOM05D001886 ORTHO05D004007 2.1e-12 76.3 104 47.1
THA.LOC104823422 Tarenaya hassleriana HOM05D001886 ORTHO05D004007 2.1e-12 76.3 104 43.3
COL.COLO4_18467 Corchorus olitorius HOM05D001886 ORTHO05D004007 2.8e-12 75.9 108 41.7
BcaC01g05612 Brassica carinata HOM05D001886 ORTHO05D004007 3.6e-12 75.5 104 42.3
C03p24330 Brassica napus HOM05D001886 ORTHO05D004007 3.6e-12 75.5 104 42.3
BolC3t14831H Brassica oleracea HOM05D001886 ORTHO05D004007 3.6e-12 75.5 104 42.3
Aa31LG5G22950 Aethionema arabicum HOM05D001886 ORTHO05D004007 4.7e-12 75.1 111 44.1
Ciclev10013572m.g Citrus clementina HOM05D001886 ORTHO05D004007 4.7e-12 75.1 109 45.9
Thhalv10017427m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 4.7e-12 75.1 104 41.3
TWI74G0754 Tripterygium wilfordii HOM05D001886 ORTHO05D004007 4.7e-12 75.1 101 45.5
AL1G18080 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 6.2e-12 74.7 92 45.7
Lj3P970T51 Lonicera japonica HOM05D001886 ORTHO05D004007 6.2e-12 74.7 99 47.5
RcHm_v2.0_Chr5g0063581 Rosa chinensis HOM05D001886 ORTHO05D004007 6.2e-12 74.7 97 48.5
Sopen09g005220 Solanum pennellii HOM05D001886 ORTHO05D004007 6.2e-12 74.7 104 45.2
C05p05710 Brassica napus HOM05D001886 ORTHO05D004007 8.1e-12 74.3 92 43.5
AT1G07795 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 1.1e-11 73.9 100 44.0
BcaB02g06704 Brassica carinata HOM05D001886 ORTHO05D004007 1.1e-11 73.9 92 42.4
BcaC07g42494 Brassica carinata HOM05D001886 ORTHO05D004007 1.1e-11 73.9 92 43.5
Sp4g19850 Schrenkiella parvula HOM05D001886 ORTHO05D004007 1.1e-11 73.9 104 41.3
Solyc09g010480.1 Solanum lycopersicum HOM05D001886 ORTHO05D004007 1.1e-11 73.9 104 46.2
Thecc.09G325900 Theobroma cacao HOM05D001886 ORTHO05D004007 1.1e-11 73.9 115 40.0
Cpa.g.sc188.23 Carica papaya HOM05D001886 ORTHO05D004007 1.4e-11 73.6 108 46.3
Thhalv10009977m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 1.4e-11 73.6 92 44.6
BraA09t41960Z Brassica rapa HOM05D001886 ORTHO05D004007 1.8e-11 73.2 92 43.5
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 2.3e-11 72.8 139 41.7
BolC5t29341H Brassica oleracea HOM05D001886 ORTHO05D015777 2.3e-11 72.8 92 43.5
Carub.0004s1945 Capsella rubella HOM05D001886 ORTHO05D004007 3.1e-11 72.4 107 42.1
CARHR007610 Cardamine hirsuta HOM05D001886 ORTHO05D004007 3.1e-11 72.4 103 42.7
CARHR132080 Cardamine hirsuta HOM05D001886 ORTHO05D004007 3.1e-11 72.4 101 42.6
Actinidia26440 Actinidia chinensis HOM05D001886 ORTHO05D004007 4.0e-11 72.0 85 54.1
AUR62041036 Chenopodium quinoa HOM05D001886 ORTHO05D004007 4.0e-11 72.0 108 45.4
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 4.0e-11 72.0 98 42.9
Sc20g0004970 Simmondsia chinensis HOM05D001886 ORTHO05D004007 5.2e-11 71.6 106 44.3
HPP92_018051 Vanilla planifolia HOM05D001886 ORTHO05D004007 5.2e-11 71.6 101 44.6
HPP92_018060 Vanilla planifolia HOM05D001886 ORTHO05D004007 5.2e-11 71.6 101 44.6
Actinidia05303 Actinidia chinensis HOM05D001886 ORTHO05D004007 6.8e-11 71.2 91 48.4
Thhalv10017464m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 6.8e-11 71.2 93 43.0
CANSAT01G0239 Cannabis sativa HOM05D001886 ORTHO05D004007 8.9e-11 70.9 96 46.9
Carub.0001s0716 Capsella rubella HOM05D001886 ORTHO05D004007 1.2e-10 70.5 104 42.3
AL4G34020 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 2.0e-10 69.7 102 41.2
Ah.01g020040 Amaranthus hybridus HOM05D001886 ORTHO05D004007 2.6e-10 69.3 108 42.6
AT2G37530 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 2.6e-10 69.3 100 44.0
A09p66220 Brassica napus HOM05D001886 ORTHO05D004007 3.4e-10 68.9 91 42.9
Sed0021579 Sechium edule HOM05D001886 ORTHO05D004007 3.4e-10 68.9 98 43.9
Nitab4.5_0002077g0050 Nicotiana tabacum HOM05D001886 ORTHO05D004007 7.5e-10 67.8 95 49.5
FvH4_3g35450 Fragaria vesca HOM05D001886 ORTHO05D004007 1.3e-09 67.0 97 46.4
FAN11G3942 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.3e-09 67.0 97 46.4
FAN16G1011 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.3e-09 67.0 97 46.4
FAN25G1849 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.3e-09 67.0 97 46.4
BcaC02g08141 Brassica carinata HOM05D001886 ORTHO05D004007 1.7e-09 66.6 101 37.6
C04p57930 Brassica napus HOM05D001886 ORTHO05D004007 1.7e-09 66.6 101 37.6
BolC4t27319H Brassica oleracea HOM05D001886 ORTHO05D004007 1.7e-09 66.6 101 37.6
FAN21G2352 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.7e-09 66.6 97 45.4
MELO3C013683.2 Cucumis melo HOM05D001886 ORTHO05D004007 2.9e-09 65.9 109 40.4
Nitab4.5_0003267g0060 Nicotiana tabacum HOM05D001886 ORTHO05D004007 2.9e-09 65.9 90 48.9
BcaC01g04990 Brassica carinata HOM05D001886 ORTHO05D004007 4.9e-09 65.1 99 37.4
A04p21800 Brassica napus HOM05D001886 ORTHO05D004007 4.9e-09 65.1 93 39.8
C03p31370 Brassica napus HOM05D001886 ORTHO05D004007 4.9e-09 65.1 99 37.4
BraA04t17747Z Brassica rapa HOM05D001886 ORTHO05D004007 4.9e-09 65.1 92 40.2
BolC3t15485H Brassica oleracea HOM05D001886 ORTHO05D004007 6.4e-09 64.7 99 37.4
C08p50390 Brassica napus HOM05D001886 ORTHO05D004007 1.4e-08 63.5 100 37.0
BolC8t52567H Brassica oleracea HOM05D001886 ORTHO05D004007 1.4e-08 63.5 100 37.0
Carub.0004s0974 Capsella rubella HOM05D001886 ORTHO05D004007 1.4e-08 63.5 90 44.4
A03p26260 Brassica napus HOM05D001886 ORTHO05D004007 2.4e-08 62.8 93 38.7
BraA03t11840Z Brassica rapa HOM05D001886 ORTHO05D004007 2.4e-08 62.8 93 38.7
SalBow3G1052 Salvia bowleyana HOM05D001886 ORTHO05D004007 3.2e-08 62.4 71 47.9
Zm00001eb028760 Zea mays HOM05D001886 ORTHO05D004007 3.2e-08 62.4 98 38.8
CSS0013260 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 4.1e-08 62.0 118 42.4
CSS0032829 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 4.1e-08 62.0 118 42.4
Thhalv10022483m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 4.1e-08 62.0 103 36.9
BcaB06g28246 Brassica carinata HOM05D001886 ORTHO05D004007 5.4e-08 61.6 93 37.6
Psat6g068320 Pisum sativum HOM05D001886 ORTHO05D004007 5.4e-08 61.6 112 42.0
PGR142G2414 Punica granatum HOM05D001886 ORTHO05D004007 7.1e-08 61.2 96 36.5
BcaB01g03123 Brassica carinata HOM05D001886 ORTHO05D004007 9.2e-08 60.8 91 36.3
CSS0006045 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 9.2e-08 60.8 121 39.7
Cpa.g.sc190.15 Carica papaya HOM05D001886 ORTHO05D004007 9.2e-08 60.8 88 43.2
AUR62036093 Chenopodium quinoa HOM05D001886 ORTHO05D004007 9.2e-08 60.8 94 41.5
Aa31LG5G7470 Aethionema arabicum HOM05D001886 ORTHO05D004007 1.2e-07 60.5 92 34.8
ATR0723G053 Amborella trichopoda HOM05D001886 ORTHO05D004007 2.1e-07 59.7 100 38.0
ClCG02G020370 Citrullus lanatus HOM05D001886 ORTHO05D004007 3.5e-07 58.9 108 38.0
Hma1.2p1_0624F.1_g191360 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 3.5e-07 58.9 99 38.4
Actinidia11249 Actinidia chinensis HOM05D001886 ORTHO05D004007 7.8e-07 57.8 95 45.3
Hund04991 Selenicereus undatus HOM05D000437 ORTHO05D000324 7.8e-07 57.8 91 38.5
Sc12g0001630 Simmondsia chinensis HOM05D001886 ORTHO05D004007 7.8e-07 57.8 94 37.2
Pp3c3_38080 Physcomitrium patens HOM05D001886 ORTHO05D004007 1.3e-06 57.0 112 35.7
Sp4g11590 Schrenkiella parvula HOM05D001886 ORTHO05D004007 3.0e-06 55.8 97 37.1
CsaV3_6G022260 Cucumis sativus L. HOM05D001886 ORTHO05D004007 3.9e-06 55.5 104 38.5
Pp3c26_1460 Physcomitrium patens HOM05D001886 ORTHO05D004007 8.6e-06 54.3 110 35.5


User provided reference genes

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