Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 6.2e-97 357.5 180 100.0
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 2.4e-88 328.9 180 91.1
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 4.0e-88 328.2 180 92.2
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 1.7e-86 322.8 180 90.0
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 1.0e-78 297.0 180 83.3
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 1.9e-77 292.7 180 84.4
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 3.2e-77 292.0 181 82.9
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 5.5e-77 291.2 181 84.5
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 4.6e-76 288.1 180 81.1
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 4.6e-76 288.1 180 81.1
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 5.1e-75 284.6 182 82.4
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 3.1e-72 275.4 180 77.8
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 3.1e-72 275.4 180 77.8
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 7.2e-69 264.2 182 75.8
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 9.3e-69 263.8 182 75.8
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 2.1e-68 262.7 182 75.3
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 2.7e-68 262.3 179 74.3
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 2.7e-68 262.3 181 76.8
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 4.6e-68 261.5 183 76.0
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 1.8e-67 259.6 183 74.3
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 3.9e-67 258.5 183 76.0
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 1.9e-66 256.1 182 74.2
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 3.3e-66 255.4 181 74.0
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 4.3e-66 255.0 181 72.9
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 7.4e-66 254.2 181 73.5
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 9.7e-66 253.8 181 73.5
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 1.3e-65 253.4 183 73.2
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 2.8e-65 252.3 183 72.1
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 3.7e-65 251.9 180 72.2
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 4.8e-65 251.5 181 71.8
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 6.3e-65 251.1 181 71.8
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 6.3e-65 251.1 182 72.5
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 1.8e-64 249.6 182 72.0
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 3.1e-64 248.8 184 72.3
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 4.1e-64 248.4 181 71.8
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 9.1e-64 247.3 181 71.8
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 2.0e-63 246.1 180 68.9
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 5.9e-63 244.6 181 72.4
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 5.9e-63 244.6 182 70.3
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 7.7e-63 244.2 182 71.4
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 7.7e-63 244.2 180 68.3
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 1.0e-62 243.8 186 68.3
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 1.4e-61 240.0 186 68.3
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 1.9e-61 239.6 184 69.0
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 2.5e-61 239.2 182 69.2
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 3.2e-61 238.8 184 69.0
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 3.2e-61 238.8 181 70.7
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 4.2e-61 238.4 182 70.9
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 5.5e-61 238.0 185 70.3
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 7.2e-61 237.7 184 70.7
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 1.2e-60 236.9 182 70.9
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 1.2e-60 236.9 182 70.9
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 1.2e-60 236.9 184 67.9
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 1.6e-60 236.5 182 70.3
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 1.6e-60 236.5 181 70.2
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 1.6e-60 236.5 151 78.8
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 2.1e-60 236.1 183 69.4
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 2.1e-60 236.1 191 66.0
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 2.7e-60 235.7 181 69.6
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 1.0e-59 233.8 189 67.7
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 1.0e-59 233.8 162 74.7
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.8e-59 233.0 180 67.2
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 1.8e-59 233.0 147 80.3
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 1.8e-59 233.0 181 64.6
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 3.9e-59 231.9 184 67.9
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 5.1e-59 231.5 180 66.7
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 8.8e-59 230.7 184 68.5
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 1.5e-58 229.9 151 73.5
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 2.0e-58 229.6 181 68.0
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 3.3e-58 228.8 185 64.3
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 4.4e-58 228.4 152 77.0
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 4.4e-58 228.4 184 66.8
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 4.8e-57 224.9 183 66.1
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 4.8e-57 224.9 183 65.0
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 6.3e-57 224.6 184 65.8
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 1.8e-56 223.0 182 65.4
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 3.1e-56 222.2 199 61.8
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 2.6e-55 219.2 171 67.3
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 7.7e-55 217.6 145 72.4
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 1.7e-54 216.5 116 88.8
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 2.2e-54 216.1 114 91.2
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 5.0e-54 214.9 181 62.4
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 5.0e-54 214.9 157 68.2
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 5.5e-53 211.5 171 63.2
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 5.5e-53 211.5 183 61.2
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 9.4e-53 210.7 154 68.2
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 9.4e-53 210.7 116 87.1
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 1.2e-52 210.3 182 59.3
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 2.1e-52 209.5 152 70.4
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 2.7e-52 209.1 169 62.1
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 2.7e-52 209.1 185 61.1
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 2.7e-52 209.1 149 71.8
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 4.7e-52 208.4 159 63.5
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 6.1e-52 208.0 186 58.6
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 7.9e-52 207.6 146 67.8
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 7.9e-52 207.6 115 85.2
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 1.4e-51 206.8 118 82.2
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 1.4e-51 206.8 145 67.6
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 1.8e-51 206.5 155 65.2
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 2.3e-51 206.1 169 61.5
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 3.9e-51 205.3 155 64.5
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 6.7e-51 204.5 145 66.9
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 1.1e-50 203.8 146 67.1
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 1.5e-50 203.4 169 59.8
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 2.6e-50 202.6 120 75.8
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 1.7e-49 199.9 175 64.0
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 2.2e-49 199.5 115 81.7
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 2.8e-49 199.1 187 59.9
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 8.2e-49 197.6 117 76.1
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 2.4e-48 196.1 182 56.6
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 4.1e-48 195.3 171 57.3
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 1.3e-46 190.3 181 62.4
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 1.0e-43 180.6 117 71.8
Pp3c7_5450 Physcomitrium patens HOM05D006027 ORTHO05D007604 1.7e-41 173.3 154 55.8
SMO347G0509 Selaginella moellendorffii HOM05D006027 ORTHO05D007604 1.8e-40 169.9 115 69.6
AagrBONN_evm.TU.Sc2ySwM_340.224 Anthoceros agrestis HOM05D006027 ORTHO05D007604 2.4e-40 169.5 108 70.4
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 7.7e-39 164.5 149 53.7
CBR_g12742 Chara braunii HOM05D006027 ORTHO05D007604 8.0e-36 154.5 110 61.8
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 2.0e-34 149.8 111 66.7
PRCOL_00005949 Prasinoderma coloniale HOM05D006027 ORTHO05D007604 9.8e-34 147.5 106 60.4
Cre10.g440450 Chlamydomonas reinhardtii HOM05D006027 ORTHO05D007604 2.2e-33 146.4 108 60.2
MCO16G336 Micromonas commoda HOM05D006027 ORTHO05D007604 8.3e-33 144.4 113 56.6
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 7.0e-24 114.8 175 45.7
Zm00001eb141750 Zea mays HOM05D006027 ORTHO05D007604 7.8e-23 111.3 59 86.4
Zm00001eb141790 Zea mays HOM05D006027 ORTHO05D007604 7.8e-23 111.3 59 86.4
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 1.8e-19 100.1 102 60.8
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 4.4e-18 95.5 63 73.0
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 2.0e-15 86.7 52 76.9
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 1.7e-14 83.6 93 52.7


User provided reference genes

Program Settings