Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G152300 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 4.6e-239 830.9 432 100.0
VMungo0720G1363 Vigna mungo HOM05D002585 ORTHO05D002917 9.7e-197 690.3 430 83.7
Glyma.10G060100 Glycine max HOM05D002585 ORTHO05D002917 2.8e-188 662.1 434 79.7
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 1.9e-152 543.1 392 70.9
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 1.4e-150 537.0 391 70.8
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 8.3e-148 527.7 395 69.6
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 1.2e-146 523.9 389 70.2
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 4.6e-146 521.9 396 68.4
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 4.3e-144 515.4 396 68.2
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 1.5e-141 506.9 396 66.2
Ca_05180_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 2.0e-141 506.5 390 66.4
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 2.0e-141 506.5 396 66.4
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 4.4e-141 505.4 398 64.6
Lj5g0007956 Lotus japonicus HOM05D002585 ORTHO05D002917 1.7e-140 503.4 404 66.1
Psat6g074480 Pisum sativum HOM05D002585 ORTHO05D002917 2.4e-139 499.6 390 65.4
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 4.1e-139 498.8 389 65.0
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 7.1e-139 498.0 389 65.0
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 3.0e-137 492.7 388 64.4
Medtr1g062710 Medicago truncatula HOM05D002585 ORTHO05D002917 3.0e-137 492.7 395 63.3
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 7.3e-136 488.0 391 63.9
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 1.2e-135 487.3 379 65.4
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 2.6e-133 479.6 394 61.4
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 7.6e-133 478.0 396 62.9
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 2.2e-132 476.5 389 64.0
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 2.9e-132 476.1 389 62.2
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 5.4e-131 471.9 402 61.4
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 7.1e-131 471.5 389 61.2
Sc20g0005720 Simmondsia chinensis HOM05D002585 ORTHO05D002917 9.2e-131 471.1 388 63.1
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 1.6e-130 470.3 389 62.2
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 7.8e-130 468.0 391 60.4
TPR.G21005 Trifolium pratense HOM05D002585 ORTHO05D002917 1.0e-129 467.6 336 71.7
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.7e-129 466.8 389 60.9
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 6.6e-129 464.9 389 60.9
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 8.7e-129 464.5 390 61.5
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 8.7e-129 464.5 389 61.2
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 2.5e-128 463.0 402 59.5
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 3.3e-128 462.6 389 59.6
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 3.3e-128 462.6 391 61.1
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 4.3e-128 462.2 389 60.4
MD13G1277900 Malus domestica HOM05D002585 ORTHO05D002917 4.3e-128 462.2 389 61.7
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 3.6e-127 459.1 397 58.4
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 4.8e-127 458.8 393 63.4
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 4.8e-127 458.8 393 63.4
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 4.8e-127 458.8 393 63.4
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 4.8e-127 458.8 393 63.4
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 1.1e-126 457.6 388 60.8
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 3.1e-126 456.1 403 58.6
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 6.9e-126 454.9 389 61.7
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 1.5e-125 453.8 389 59.1
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 2.6e-125 453.0 403 58.1
TPR.G21013 Trifolium pratense HOM05D002585 ORTHO05D002917 3.4e-125 452.6 357 64.4
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 4.4e-125 452.2 390 61.0
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 2.9e-124 449.5 395 60.5
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 3.8e-124 449.1 385 60.3
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 6.4e-124 448.4 400 59.2
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 1.4e-123 447.2 388 59.8
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 1.4e-123 447.2 388 59.3
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 1.9e-123 446.8 388 60.1
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 2.1e-122 443.4 385 59.0
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 2.7e-122 443.0 389 57.3
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 3.5e-122 442.6 394 57.1
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 4.6e-122 442.2 388 58.2
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 6.0e-122 441.8 399 57.4
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 6.0e-122 441.8 388 61.1
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 3.0e-121 439.5 387 57.9
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 3.9e-121 439.1 396 55.6
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 3.9e-121 439.1 346 65.3
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 8.7e-121 438.0 417 54.7
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 1.5e-120 437.2 395 55.7
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 1.9e-120 436.8 408 55.9
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 2.5e-120 436.4 389 57.1
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 2.5e-120 436.4 391 58.1
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 3.3e-120 436.0 421 54.4
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 7.3e-120 434.9 388 59.5
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 2.1e-119 433.3 408 53.9
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 2.8e-119 433.0 388 56.4
Os10g0456500 Oryza sativa ssp. japonica HOM05D002585 ORTHO05D002917 2.8e-119 433.0 391 59.6
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 5.3e-118 428.7 400 57.2
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 6.9e-118 428.3 393 56.5
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 1.2e-117 427.6 388 57.5
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 1.5e-117 427.2 388 58.5
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.7e-116 423.7 397 56.7
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 2.9e-116 422.9 383 59.0
VMungo0720G0437 Vigna mungo HOM05D002585 ORTHO05D002917 1.1e-115 421.0 382 59.4
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 7.9e-114 414.8 391 56.0
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 1.0e-113 414.5 406 53.9
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.9e-113 412.5 410 54.6
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 6.7e-113 411.8 390 55.9
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 8.7e-113 411.4 345 60.3
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 4.3e-112 409.1 389 56.3
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 4.3e-112 409.1 393 57.8
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 7.4e-112 408.3 388 54.6
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 1.6e-111 407.1 389 53.5
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 1.6e-111 407.1 389 53.5
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 1.6e-111 407.1 389 53.5
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 4.8e-111 405.6 385 53.8
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 6.2e-111 405.2 389 54.8
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 2.4e-110 403.3 387 54.5
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 2.0e-109 400.2 356 58.7
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.8e-108 396.0 394 54.3
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 4.9e-108 395.6 403 53.6
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 1.1e-107 394.4 391 55.2
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 1.4e-107 394.0 348 59.5
Lj3C991T4 Lonicera japonica HOM05D002585 ORTHO05D002917 5.5e-107 392.1 354 57.1
Peaxi162Scf00529g00035 Petunia axillaris HOM05D002585 ORTHO05D002917 9.3e-107 391.3 434 50.7
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 1.2e-106 391.0 388 53.4
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 4.3e-104 382.5 329 60.5
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 2.1e-103 380.2 423 49.2
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 3.7e-103 379.4 402 48.5
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 5.3e-102 375.6 403 49.9
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 1.2e-101 374.4 389 51.4
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 2.9e-100 369.8 274 65.7
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.9e-99 367.1 382 52.1
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 9.3e-99 364.8 462 46.3
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 1.2e-98 364.4 390 51.0
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 1.6e-98 364.0 398 50.8
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 4.6e-98 362.5 396 51.8
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 6.1e-98 362.1 385 50.1
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 9.7e-96 354.8 339 54.9
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.2e-95 353.6 414 50.2
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 3.7e-95 352.8 406 48.5
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 8.2e-95 351.7 388 49.2
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.4e-94 350.9 289 60.9
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.8e-94 350.5 394 46.2
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 2.4e-94 350.1 388 51.0
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 6.9e-94 348.6 348 52.9
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 9.0e-94 348.2 394 46.2
Nitab4.5_0008265g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.0e-93 347.1 418 47.6
Nitab4.5_0000217g0060 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.9e-91 340.5 336 53.3
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.8e-89 334.0 401 48.9
Pp3c21_9940 Physcomitrium patens HOM05D002585 ORTHO05D002917 9.7e-88 328.2 391 43.2
Lalb_Chr21g0315141 Lupinus albus HOM05D002585 ORTHO05D002917 3.7e-87 326.2 226 73.5
CBR_g37575 Chara braunii HOM05D002585 ORTHO05D002917 2.4e-86 323.6 380 45.5
Pp3c22_1270 Physcomitrium patens HOM05D002585 ORTHO05D002917 2.6e-85 320.1 390 42.3
Gohir.A04G069800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 4.8e-79 299.3 244 61.9
MELO3C024485.2 Cucumis melo HOM05D002585 ORTHO05D002917 3.1e-78 296.6 229 65.9
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 3.6e-74 283.1 335 49.3
Solyc06g011290.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.4e-73 281.2 318 48.7
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 2.0e-72 277.3 225 63.6
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 6.3e-71 272.3 341 44.6
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 3.2e-67 260.0 337 44.5
PGSC0003DMG401009595 Solanum tuberosum HOM05D002585 ORTHO05D002917 2.1e-66 257.3 343 42.3
Peaxi162Scf00780g01019 Petunia axillaris HOM05D002585 ORTHO05D002917 1.7e-63 247.7 224 57.1
Solyc01g056430.2 Solanum lycopersicum HOM05D002585 ORTHO05D002917 2.8e-63 246.9 342 41.8
HanXRQChr05g0144541 Helianthus annuus HOM05D002585 ORTHO05D002917 4.8e-63 246.1 176 67.6
CBR_g51531 Chara braunii HOM05D002585 ORTHO05D002917 1.4e-62 244.6 273 45.4
CiPaw.09G003100 Carya illinoinensis HOM05D002585 ORTHO05D002917 2.2e-60 237.3 154 76.0
Mapoly0010s0006 Marchantia polymorpha HOM05D002585 ORTHO05D002917 2.1e-58 230.7 222 53.6
Haze_19443 Corylus avellana HOM05D002585 ORTHO05D002917 1.4e-57 228.0 143 79.7
PGSC0003DMG400019014 Solanum tuberosum HOM05D002585 ORTHO05D002917 3.0e-57 226.9 340 39.4
Lalb_Chr02g0155471 Lupinus albus HOM05D002585 ORTHO05D002917 1.4e-54 218.0 140 77.1
Nitab4.5_0004314g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.7e-53 213.8 235 49.8
Peaxi162Scf00247g00105 Petunia axillaris HOM05D002585 ORTHO05D002917 3.5e-53 213.4 186 58.1
Zm00001eb046790 Zea mays HOM05D002585 ORTHO05D002917 2.3e-52 210.7 149 69.1
Sopen01g025510 Solanum pennellii HOM05D002585 ORTHO05D002917 6.6e-52 209.1 330 37.9
RcHm_v2.0_Chr6g0260941 Rosa chinensis HOM05D002585 ORTHO05D002917 1.9e-51 207.6 185 59.5
Dinv35818 Davidia involucrata HOM05D002585 ORTHO05D002917 8.0e-50 202.2 144 70.1
Lalb_Chr21g0315151 Lupinus albus HOM05D002585 ORTHO05D002917 8.0e-50 202.2 165 61.2
Nitab4.5_0003945g0160 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.3e-44 184.1 183 53.0
Lalb_Chr02g0155491 Lupinus albus HOM05D002585 ORTHO05D002917 1.6e-42 177.9 162 57.4
SHI27836 Sapria himalayana HOM05D002585 ORTHO05D002917 2.1e-42 177.6 263 39.9
Nitab4.5_0008230g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.6e-40 170.6 158 58.9
CAN.G541.45 Capsicum annuum HOM05D002585 ORTHO05D002917 9.2e-38 162.2 179 50.3
HanXRQChr05g0144531 Helianthus annuus HOM05D002585 ORTHO05D002917 9.5e-35 152.1 165 46.7
Glyma.13G146751 Glycine max HOM05D002585 ORTHO05D002917 2.3e-33 147.5 83 86.7
Cfa022823 Carpinus fangiana HOM05D002585 ORTHO05D002917 1.3e-31 141.7 425 26.1
unitig_0.g678 Utricularia gibba HOM05D002585 ORTHO05D002917 2.9e-31 140.6 146 50.0
SHI27837 Sapria himalayana HOM05D002585 ORTHO05D002917 3.5e-29 133.7 84 77.4
Peaxi162Scf00780g01013 Petunia axillaris HOM05D002585 ORTHO05D002917 1.9e-27 127.9 164 42.7
Nitab4.5_0008230g0010 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.0e-24 117.9 140 42.9
Peaxi162Scf00247g00111 Petunia axillaris HOM05D002585 ORTHO05D002917 2.0e-24 117.9 141 45.4
Carub.0005s1971 Capsella rubella HOM05D002585 ORTHO05D002917 4.6e-21 106.7 86 59.3
Nitab4.5_0003945g0140 Nicotiana tabacum HOM05D002585 ORTHO05D002917 8.1e-18 95.9 141 40.4
Solyc01g056400.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 6.4e-15 86.3 66 60.6
Solyc01g056390.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.7e-12 78.2 76 48.7
VMungo0720G3162 Vigna mungo HOM05D002585 ORTHO05D002917 3.0e-12 77.4 52 75.0
CARHR060240 Cardamine hirsuta HOM05D002585 ORTHO05D002917 3.1e-09 67.4 117 40.2
Nitab4.5_0003945g0170 Nicotiana tabacum HOM05D002585 ORTHO05D023007 1.9e-06 58.2 55 50.9


User provided reference genes

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