Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 3.0e-54 214.9 107 100.0
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 9.5e-45 183.3 107 84.1
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 1.6e-44 182.6 107 84.1
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 3.8e-41 171.4 107 80.4
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 9.2e-40 166.8 107 75.7
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 2.1e-39 165.6 107 73.8
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 3.5e-39 164.9 107 75.7
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 7.8e-39 163.7 107 75.7
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 1.0e-38 163.3 107 75.7
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 1.0e-38 163.3 107 73.8
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 1.3e-38 162.9 107 75.7
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 1.3e-38 162.9 107 74.8
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 1.7e-38 162.5 107 74.8
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 1.7e-38 162.5 107 72.9
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 3.0e-38 161.8 107 72.9
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 3.9e-38 161.4 107 74.8
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 3.9e-38 161.4 107 74.8
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 5.1e-38 161.0 104 74.0
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 8.6e-38 160.2 104 74.0
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 8.6e-38 160.2 107 73.8
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 1.1e-37 159.8 107 72.0
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 1.5e-37 159.5 107 72.9
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 1.5e-37 159.5 106 74.5
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 2.5e-37 158.7 107 72.9
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 2.5e-37 158.7 105 75.2
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 2.5e-37 158.7 107 72.9
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.3e-37 158.3 104 74.0
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 3.3e-37 158.3 107 72.9
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 4.3e-37 157.9 104 73.1
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 4.3e-37 157.9 107 72.9
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 4.3e-37 157.9 107 72.9
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 4.3e-37 157.9 104 73.1
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 9.6e-37 156.8 107 72.9
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 9.6e-37 156.8 104 74.0
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 9.6e-37 156.8 104 74.0
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 1.2e-36 156.4 104 74.0
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.6e-36 156.0 105 71.4
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 2.8e-36 155.2 104 70.2
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 2.8e-36 155.2 104 71.2
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 4.7e-36 154.5 105 72.4
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 4.7e-36 154.5 99 76.8
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 4.7e-36 154.5 107 72.0
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 4.7e-36 154.5 107 72.0
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 6.2e-36 154.1 104 73.1
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 6.2e-36 154.1 107 73.8
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 6.2e-36 154.1 104 68.3
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 8.1e-36 153.7 104 71.2
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.1e-35 153.3 105 71.4
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 1.1e-35 153.3 104 71.2
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 1.4e-35 152.9 99 73.7
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 1.4e-35 152.9 107 71.0
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 3.1e-35 151.8 104 70.2
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 3.1e-35 151.8 105 69.5
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 3.1e-35 151.8 105 69.5
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 4.0e-35 151.4 105 69.5
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 5.2e-35 151.0 103 70.9
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 5.2e-35 151.0 103 70.9
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 6.9e-35 150.6 104 70.2
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 6.9e-35 150.6 104 70.2
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 6.9e-35 150.6 107 68.2
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 9.0e-35 150.2 104 68.3
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 9.0e-35 150.2 104 67.3
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 9.0e-35 150.2 104 65.4
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.2e-34 149.8 104 72.1
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 1.5e-34 149.4 105 67.6
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 1.5e-34 149.4 103 69.9
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.5e-34 149.4 104 72.1
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 1.5e-34 149.4 103 69.9
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 1.5e-34 149.4 104 71.2
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 1.5e-34 149.4 107 69.2
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 1.5e-34 149.4 105 67.6
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 2.0e-34 149.1 104 69.2
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 3.4e-34 148.3 107 68.2
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 4.4e-34 147.9 104 72.1
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 4.4e-34 147.9 107 68.2
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 4.4e-34 147.9 104 71.2
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 5.8e-34 147.5 107 67.3
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 5.8e-34 147.5 101 70.3
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 5.8e-34 147.5 104 65.4
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 5.8e-34 147.5 104 65.4
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 9.9e-34 146.7 107 66.4
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 1.3e-33 146.4 99 70.7
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 1.3e-33 146.4 92 76.1
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 1.7e-33 146.0 107 67.3
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 2.2e-33 145.6 98 71.4
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 2.9e-33 145.2 97 71.1
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 4.9e-33 144.4 107 68.2
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 1.6e-31 139.4 104 62.5
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 1.6e-31 139.4 104 62.5
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 2.1e-31 139.0 104 64.4
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 2.7e-31 138.7 92 70.7
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 4.6e-31 137.9 107 62.6
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 7.8e-31 137.1 104 63.5
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 7.8e-31 137.1 99 62.6
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 7.8e-31 137.1 92 71.7
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 7.8e-31 137.1 104 63.5
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 1.0e-30 136.7 104 64.4
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 1.3e-30 136.3 93 67.7
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 1.1e-29 133.3 109 64.2
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 1.5e-29 132.9 133 57.1
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 5.6e-29 131.0 132 51.5
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 4.8e-28 127.9 100 59.0
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 1.1e-27 126.7 103 60.2
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 5.3e-27 124.4 104 57.7
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 5.3e-27 124.4 104 57.7
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 9.0e-27 123.6 76 80.3
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 2.6e-26 122.1 77 75.3
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 9.9e-26 120.2 103 57.3
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 1.3e-25 119.8 104 55.8
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 1.1e-24 116.7 92 57.6
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 4.2e-24 114.8 91 62.6
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 4.2e-24 114.8 78 70.5
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 5.4e-24 114.4 97 53.6
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 7.1e-24 114.0 70 80.0
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 6.0e-23 110.9 70 78.6
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 2.3e-22 109.0 105 50.5
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 3.0e-22 108.6 95 52.6
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 1.9e-21 105.9 76 67.1
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 2.5e-21 105.5 86 62.8
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 9.6e-21 103.6 79 59.5
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 9.6e-21 103.6 74 62.2
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 2.8e-20 102.1 95 49.5
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 1.1e-19 100.1 88 52.3
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 3.1e-19 98.6 98 57.1
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 5.3e-19 97.8 105 56.2
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 5.3e-19 97.8 112 51.8
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 2.6e-18 95.5 79 59.5
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 7.9e-15 84.0 68 55.9
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 1.0e-14 83.6 50 82.0
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 4.3e-13 78.2 82 56.1
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 2.1e-12 75.9 45 73.3
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 5.8e-10 67.8 45 73.3
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 5.8e-10 67.8 82 41.5
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 6.0e-07 57.8 42 59.5


User provided reference genes

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