Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G146500 Phaseolus vulgaris HOM05D002768 ORTHO05D002993 9.9e-33 142.9 74 100.0
Glyma.19G162700 Glycine max HOM05D002768 ORTHO05D002993 1.4e-18 95.9 66 77.3
VMungo0720G2804 Vigna mungo HOM05D002768 ORTHO05D002993 6.9e-18 93.6 59 83.1
Glyma.10G034800 Glycine max HOM05D002768 ORTHO05D002993 1.5e-17 92.4 60 81.7
Phvul.007G195300 Phaseolus vulgaris HOM05D002768 ORTHO05D002993 2.6e-17 91.7 59 81.4
Glyma.13G121100 Glycine max HOM05D002768 ORTHO05D002993 3.4e-17 91.3 60 80.0
Glyma.03G161000 Glycine max HOM05D002768 ORTHO05D002993 6.4e-16 87.0 58 77.6
Phvul.001G158900 Phaseolus vulgaris HOM05D002768 ORTHO05D002993 1.9e-15 85.5 58 75.9
arahy.Tifrunner.gnm1.ann1.9IC2FY Arachis hypogaea HOM05D002768 ORTHO05D002993 2.4e-15 85.1 58 75.9
Medtr1g070240 Medicago truncatula HOM05D002768 ORTHO05D002993 2.4e-15 85.1 60 73.3
TPR.G27242 Trifolium pratense HOM05D002768 ORTHO05D002993 3.2e-15 84.7 60 73.3
Ca_09696_v3 Cicer arietinum L. HOM05D002768 ORTHO05D002993 4.2e-15 84.3 60 73.3
Lalb_Chr21g0306161 Lupinus albus HOM05D002768 ORTHO05D002993 2.1e-14 82.0 58 72.4
CSS0010842 Camellia sinensis var. sinensis HOM05D002768 ORTHO05D002993 1.8e-13 79.0 57 70.2
Duzib133G0395 Durio zibethinus HOM05D002768 ORTHO05D002993 2.3e-13 78.6 56 73.2
TAR636G1486 Trochodendron aralioides HOM05D002768 ORTHO05D002993 2.3e-13 78.6 57 70.2
Thecc.01G262700 Theobroma cacao HOM05D002768 ORTHO05D002993 3.0e-13 78.2 56 73.2
arahy.Tifrunner.gnm1.ann1.VRQ9RQ Arachis hypogaea HOM05D002768 ORTHO05D002993 3.9e-13 77.8 54 74.1
Gohir.A11G128900 Gossypium hirsutum HOM05D002768 ORTHO05D002993 5.1e-13 77.4 56 71.4
Gohir.D11G134700 Gossypium hirsutum HOM05D002768 ORTHO05D002993 5.1e-13 77.4 56 71.4
Actinidia31881 Actinidia chinensis HOM05D002768 ORTHO05D002993 6.7e-13 77.0 57 68.4
Ciclev10022892m.g Citrus clementina HOM05D002768 ORTHO05D002993 6.7e-13 77.0 56 71.4
Lj1g0011004 Lotus japonicus HOM05D002768 ORTHO05D002993 6.7e-13 77.0 58 67.2
MD10G1188000 Malus domestica HOM05D002768 ORTHO05D002993 6.7e-13 77.0 56 71.4
Prupe.8G227800 Prunus persica HOM05D002768 ORTHO05D002993 6.7e-13 77.0 56 71.4
GSVIVG01028292001 Vitis vinifera HOM05D002768 ORTHO05D002993 6.7e-13 77.0 57 68.4
CiPaw.03G261200 Carya illinoinensis HOM05D002768 ORTHO05D002993 8.7e-13 76.6 57 71.9
FvH4_2g22020 Fragaria vesca HOM05D002768 ORTHO05D002993 1.1e-12 76.3 56 71.4
FAN15G0014 Fragaria x ananassa HOM05D002768 ORTHO05D002993 1.1e-12 76.3 56 71.4
FAN20G3068 Fragaria x ananassa HOM05D002768 ORTHO05D002993 1.1e-12 76.3 56 71.4
FAN24G3366 Fragaria x ananassa HOM05D002768 ORTHO05D002993 1.1e-12 76.3 56 71.4
FAN27G1551 Fragaria x ananassa HOM05D002768 ORTHO05D002993 1.1e-12 76.3 56 71.4
Dinv34595 Davidia involucrata HOM05D002768 ORTHO05D002993 1.5e-12 75.9 57 68.4
MD05G1201200 Malus domestica HOM05D002768 ORTHO05D002993 1.5e-12 75.9 56 69.6
RcHm_v2.0_Chr6g0288881 Rosa chinensis HOM05D002768 ORTHO05D002993 1.5e-12 75.9 56 71.4
arahy.Tifrunner.gnm1.ann1.IM1D59 Arachis hypogaea HOM05D002768 ORTHO05D002993 1.9e-12 75.5 58 67.2
Dinv22446 Davidia involucrata HOM05D002768 ORTHO05D002993 1.9e-12 75.5 56 71.4
Eucgr.B01517 Eucalyptus grandis HOM05D002768 ORTHO05D002993 1.9e-12 75.5 57 68.4
Gorai.007G144100 Gossypium raimondii HOM05D002768 ORTHO05D002993 1.9e-12 75.5 58 67.2
Sc24g0003070 Simmondsia chinensis HOM05D002055 ORTHO05D002120 1.9e-12 75.5 57 66.7
Gohir.A07G211000 Gossypium hirsutum HOM05D002768 ORTHO05D002993 2.5e-12 75.1 56 69.6
Gohir.D07G217000 Gossypium hirsutum HOM05D002768 ORTHO05D002993 2.5e-12 75.1 56 69.6
Gorai.001G251400 Gossypium raimondii HOM05D002768 ORTHO05D002993 2.5e-12 75.1 56 69.6
Atru.chr5.1638 Acer truncatum HOM05D002768 ORTHO05D002993 3.3e-12 74.7 56 67.9
Actinidia02485 Actinidia chinensis HOM05D002768 ORTHO05D002993 3.3e-12 74.7 57 66.7
COL.COLO4_05595 Corchorus olitorius HOM05D002768 ORTHO05D002993 3.3e-12 74.7 56 71.4
TAR602G0002 Trochodendron aralioides HOM05D002768 ORTHO05D002993 3.3e-12 74.7 57 66.7
AUR62011904 Chenopodium quinoa HOM05D002768 ORTHO05D002993 9.6e-12 73.2 57 68.4
AUR62024745 Chenopodium quinoa HOM05D002768 ORTHO05D002993 9.6e-12 73.2 57 68.4
Duzib138G0125 Durio zibethinus HOM05D002768 ORTHO05D002993 9.6e-12 73.2 53 71.7
Sed0002197 Sechium edule HOM05D002768 ORTHO05D002993 9.6e-12 73.2 57 68.4
Potri.002G041500 Populus trichocarpa HOM05D002768 ORTHO05D002993 1.3e-11 72.8 57 66.7
Hund09586 Selenicereus undatus HOM05D002768 ORTHO05D002993 1.6e-11 72.4 57 64.9
CiPaw.04G184600 Carya illinoinensis HOM05D002768 ORTHO05D002993 2.1e-11 72.0 57 66.7
CsaV3_3G022610 Cucumis sativus L. HOM05D002768 ORTHO05D002993 2.1e-11 72.0 57 66.7
Manes.01G199100 Manihot esculenta HOM05D002768 ORTHO05D002993 2.1e-11 72.0 56 67.9
Potri.005G221600 Populus trichocarpa HOM05D002768 ORTHO05D002993 2.1e-11 72.0 57 68.4
CANSAT01G2421 Cannabis sativa HOM05D002768 ORTHO05D002993 2.8e-11 71.6 57 66.7
Manes.05G087400 Manihot esculenta HOM05D002768 ORTHO05D002993 2.8e-11 71.6 56 67.9
vmacro20766 Vaccinium macrocarpon HOM05D002768 ORTHO05D002993 2.8e-11 71.6 55 67.3
EL10Ac5g10428 Beta vulgaris HOM05D002768 ORTHO05D002993 4.8e-11 70.9 57 66.7
MELO3C018066.2 Cucumis melo HOM05D002768 ORTHO05D002993 4.8e-11 70.9 57 64.9
Nn6g34823 Nelumbo nucifera HOM05D002768 ORTHO05D002993 8.1e-11 70.1 56 66.1
TAR362G0041 Trochodendron aralioides HOM05D002768 ORTHO05D002993 8.1e-11 70.1 56 66.1
HPP92_015824 Vanilla planifolia HOM05D002768 ORTHO05D002993 8.1e-11 70.1 56 62.5
TAR365G0069 Trochodendron aralioides HOM05D002768 ORTHO05D002993 1.1e-10 69.7 54 64.8
unitig_8.g4276 Utricularia gibba HOM05D002768 ORTHO05D002993 1.1e-10 69.7 56 67.9
arahy.Tifrunner.gnm1.ann1.HAI34B Arachis hypogaea HOM05D005194 ORTHO05D003357 1.4e-10 69.3 53 67.9
arahy.Tifrunner.gnm1.ann1.XKA0JW Arachis hypogaea HOM05D002768 ORTHO05D002993 1.8e-10 68.9 54 66.7
CDE02G4256 Ceratophyllum demersum HOM05D002768 ORTHO05D002993 1.8e-10 68.9 57 63.2
CDE05G3623 Ceratophyllum demersum HOM05D002768 ORTHO05D002993 1.8e-10 68.9 57 63.2
SGA_v2.0_scaffold385G50445 Striga asiatica HOM05D002768 ORTHO05D002993 1.8e-10 68.9 57 66.7
THA.LOC104822099 Tarenaya hassleriana HOM05D002768 ORTHO05D002993 1.8e-10 68.9 56 64.3
Aa31LG10G12890 Aethionema arabicum HOM05D002768 ORTHO05D002993 2.4e-10 68.6 56 64.3
Cpa.g.sc50.48 Carica papaya HOM05D002768 ORTHO05D002993 2.4e-10 68.6 51 68.6
Nn3g19597 Nelumbo nucifera HOM05D002768 ORTHO05D002993 2.4e-10 68.6 56 64.3
Nitab4.5_0000086g0160 Nicotiana tabacum HOM05D002768 ORTHO05D002993 2.4e-10 68.6 57 64.9
TAR542G0003 Trochodendron aralioides HOM05D002768 ORTHO05D002993 3.1e-10 68.2 53 66.0
ATR0763G011 Amborella trichopoda HOM05D002768 ORTHO05D002993 5.3e-10 67.4 57 61.4
arahy.Tifrunner.gnm1.ann1.JQ3F04 Arachis hypogaea HOM05D002768 ORTHO05D002993 5.3e-10 67.4 53 66.0
arahy.Tifrunner.gnm1.ann1.V2BS34 Arachis hypogaea HOM05D002768 ORTHO05D002993 5.3e-10 67.4 53 66.0
Oeu039684.1 Olea europaea HOM05D002768 ORTHO05D002993 6.9e-10 67.0 57 64.9
CDE05G3616 Ceratophyllum demersum HOM05D002768 ORTHO05D002993 9.0e-10 66.6 53 62.3
Haze_24588 Corylus avellana HOM05D002768 ORTHO05D002993 9.0e-10 66.6 52 67.3
Haze_24592 Corylus avellana HOM05D002768 ORTHO05D002993 9.0e-10 66.6 52 67.3
Peaxi162Scf00134g01212 Petunia axillaris HOM05D002768 ORTHO05D002993 9.0e-10 66.6 57 63.2
ClCG07G000890 Citrullus lanatus HOM05D002768 ORTHO05D002993 1.2e-09 66.2 53 66.0
Carub.0005s2502 Capsella rubella HOM05D002768 ORTHO05D002993 1.5e-09 65.9 56 62.5
Nn5g27788 Nelumbo nucifera HOM05D002768 ORTHO05D002993 1.5e-09 65.9 57 63.2
SGA_v2.0_scaffold21G09479 Striga asiatica HOM05D002768 ORTHO05D002993 1.5e-09 65.9 52 63.5
TWI75G1788 Tripterygium wilfordii HOM05D002768 ORTHO05D002993 1.5e-09 65.9 57 64.9
Cc01_g18540 Coffea canephora HOM05D002768 ORTHO05D002993 2.0e-09 65.5 57 63.2
Thhalv10006315m.g Eutrema salsugineum HOM05D002768 ORTHO05D002993 2.0e-09 65.5 56 62.5
SalBow6G5688 Salvia bowleyana HOM05D002768 ORTHO05D002993 2.0e-09 65.5 57 64.9
TWI12G0491 Tripterygium wilfordii HOM05D002768 ORTHO05D002993 2.0e-09 65.5 57 64.9
MBI18_g20354_MAGBIO Magnolia biondii HOM05D002768 ORTHO05D002993 2.6e-09 65.1 53 62.3
arahy.Tifrunner.gnm1.ann1.20C9TU Arachis hypogaea HOM05D000211 ORTHO05D002993 3.4e-09 64.7 51 66.7
arahy.Tifrunner.gnm1.ann1.8827VP Arachis hypogaea HOM05D000211 ORTHO05D011198 3.4e-09 64.7 51 66.7
BcaB02g07545 Brassica carinata HOM05D002768 ORTHO05D002993 3.4e-09 64.7 57 59.6
Migut.J00939 Erythranthe guttata HOM05D002768 ORTHO05D002993 3.4e-09 64.7 57 64.9
MBI17_g17501_MAGBIO Magnolia biondii HOM05D002768 ORTHO05D002993 3.4e-09 64.7 52 61.5
Sc05g0000790 Simmondsia chinensis HOM05D002768 ORTHO05D002993 3.4e-09 64.7 57 61.4
AT3G58170 Arabidopsis thaliana HOM05D002768 ORTHO05D002993 4.5e-09 64.3 56 60.7
BcaC07g40187 Brassica carinata HOM05D002768 ORTHO05D002993 4.5e-09 64.3 56 60.7
BcaC07g40269 Brassica carinata HOM05D002768 ORTHO05D002993 4.5e-09 64.3 56 60.7
CAN.G461.7 Capsicum annuum HOM05D002768 ORTHO05D002993 4.5e-09 64.3 50 66.0
CARHR168540 Cardamine hirsuta HOM05D002768 ORTHO05D002993 4.5e-09 64.3 56 60.7
PSO135G1068 Papaver somniferum HOM05D002768 ORTHO05D002993 4.5e-09 64.3 54 63.0
PSO384G1628 Papaver somniferum HOM05D002768 ORTHO05D002993 4.5e-09 64.3 54 63.0
Sabra05G0170500 Salix brachista HOM05D002768 ORTHO05D002993 4.5e-09 64.3 55 65.5
THA.LOC104802844 Tarenaya hassleriana HOM05D002768 ORTHO05D002993 4.5e-09 64.3 56 58.9
Migut.L01551 Erythranthe guttata HOM05D002768 ORTHO05D002993 5.8e-09 63.9 59 64.4
Aqoxy1G00263 Aquilegia oxysepala HOM05D002768 ORTHO05D002993 7.6e-09 63.5 55 58.2
Aqoxy335s002 Aquilegia oxysepala HOM05D002768 ORTHO05D002993 7.6e-09 63.5 55 58.2
DCAR_014581 Daucus carota HOM05D002768 ORTHO05D002993 7.6e-09 63.5 57 57.9
Hma1.2p1_0273F.1_g109980 Hydrangea macrophylla HOM05D002768 ORTHO05D002993 7.6e-09 63.5 53 64.2
Solyc06g008520.4 Solanum lycopersicum HOM05D002768 ORTHO05D002993 7.6e-09 63.5 57 59.6
Sopen06g003290 Solanum pennellii HOM05D002768 ORTHO05D002993 7.6e-09 63.5 57 59.6
PGSC0003DMG400010893 Solanum tuberosum HOM05D002768 ORTHO05D002993 7.6e-09 63.5 57 59.6
PGSC0003DMG400031428 Solanum tuberosum HOM05D002768 ORTHO05D002993 7.6e-09 63.5 50 66.0
GSVIVG01029089001 Vitis vinifera HOM05D002768 ORTHO05D002993 7.6e-09 63.5 56 60.7
Ah.02g111780 Amaranthus hybridus HOM05D002768 ORTHO05D002993 1.0e-08 63.2 52 63.5
Nitab4.5_0011666g0010 Nicotiana tabacum HOM05D002768 ORTHO05D002993 1.0e-08 63.2 50 64.0
Sp5g04550 Schrenkiella parvula HOM05D002768 ORTHO05D002993 1.0e-08 63.2 56 60.7
Zm00001eb038830 Zea mays HOM05D002768 ORTHO05D002993 1.3e-08 62.8 56 57.1
A07p23960 Brassica napus HOM05D002768 ORTHO05D002993 1.7e-08 62.4 56 58.9
BcaC08g44903 Brassica carinata HOM05D002768 ORTHO05D002993 2.2e-08 62.0 59 59.3
ECA248G1647 Erigeron canadensis HOM05D002768 ORTHO05D002993 2.2e-08 62.0 57 56.1
PSO675G7618 Papaver somniferum HOM05D002768 ORTHO05D002993 2.2e-08 62.0 53 62.3
HanXRQChr01g0014261 Helianthus annuus HOM05D002768 ORTHO05D002993 2.9e-08 61.6 57 56.1
Os08g0563300 Oryza sativa ssp. japonica HOM05D002768 ORTHO05D002993 3.8e-08 61.2 56 58.9
Peaxi162Scf00018g02019 Petunia axillaris HOM05D002768 ORTHO05D002993 4.9e-08 60.8 57 56.1
Manes.15G038000 Manihot esculenta HOM05D002768 ORTHO05D002993 6.5e-08 60.5 57 59.6
Nitab4.5_0000326g0040 Nicotiana tabacum HOM05D002768 ORTHO05D002993 6.5e-08 60.5 50 58.0
AL5G39870 Arabidopsis lyrata HOM05D002768 ORTHO05D002993 8.4e-08 60.1 56 57.1
QL06p016605 Quercus lobata HOM05D002768 ORTHO05D002993 8.4e-08 60.1 56 55.4
PSO541G3332 Papaver somniferum HOM05D002768 ORTHO05D002993 1.4e-07 59.3 49 63.3
A09p50930 Brassica napus HOM05D002768 ORTHO05D002993 2.5e-07 58.5 52 59.6
C08p33750 Brassica napus HOM05D002768 ORTHO05D002993 2.5e-07 58.5 52 59.6
BolC8t50974H Brassica oleracea HOM05D002768 ORTHO05D002993 2.5e-07 58.5 52 59.6
BraA09t40539Z Brassica rapa HOM05D002768 ORTHO05D002993 2.5e-07 58.5 52 59.6
Lsat_1_v5_gn_5_181681 Lactuca sativa HOM05D002768 ORTHO05D002993 3.2e-07 58.2 53 58.5
ATR0789G106 Amborella trichopoda HOM05D002768 ORTHO05D002993 4.2e-07 57.8 52 57.7
Aqoxy2G01787 Aquilegia oxysepala HOM05D002768 ORTHO05D002993 4.2e-07 57.8 55 58.2
Carub.0007s2776 Capsella rubella HOM05D002768 ORTHO05D002993 4.2e-07 57.8 57 54.4
Cc03_g05090 Coffea canephora HOM05D002768 ORTHO05D002993 4.2e-07 57.8 54 50.0
Sp7g12540 Schrenkiella parvula HOM05D002768 ORTHO05D002993 4.2e-07 57.8 59 55.9
AT4G14455 Arabidopsis thaliana HOM05D002768 ORTHO05D002993 5.5e-07 57.4 57 52.6
SHI09877 Sapria himalayana HOM05D002768 ORTHO05D002993 5.5e-07 57.4 49 57.1
ClCG06G006820 Citrullus lanatus HOM05D002768 ORTHO05D002993 7.1e-07 57.0 54 51.9
Medtr1g044145 Medicago truncatula HOM05D002768 ORTHO05D002993 7.1e-07 57.0 59 52.5
BcaB04g18223 Brassica carinata HOM05D002768 ORTHO05D002993 9.3e-07 56.6 59 54.2
BcaC07g37818 Brassica carinata HOM05D002768 ORTHO05D002993 9.3e-07 56.6 59 54.2
BolC8t48206H Brassica oleracea HOM05D002768 ORTHO05D002993 9.3e-07 56.6 59 54.2
BraA08t33106Z Brassica rapa HOM05D002768 ORTHO05D002993 9.3e-07 56.6 59 54.2
MELO3C012982.2 Cucumis melo HOM05D002768 ORTHO05D002993 9.3e-07 56.6 54 50.0
CsaV3_3G023820 Cucumis sativus L. HOM05D002768 ORTHO05D002993 9.3e-07 56.6 54 50.0
Nitab4.5_0001327g0100 Nicotiana tabacum HOM05D002768 ORTHO05D002993 9.3e-07 56.6 48 60.4
C06p25230 Brassica napus HOM05D002768 ORTHO05D002993 1.2e-06 56.2 55 58.2
BolC6t37682H Brassica oleracea HOM05D002768 ORTHO05D002993 1.2e-06 56.2 55 58.2
Prupe.1G034500 Prunus persica HOM05D002768 ORTHO05D002993 1.2e-06 56.2 56 51.8
Zm00001eb259160 Zea mays HOM05D002768 ORTHO05D002993 1.2e-06 56.2 52 55.8
Glyma.10G008300 Glycine max HOM05D002768 ORTHO05D002993 1.6e-06 55.8 59 50.8
Manes.03G167200 Manihot esculenta HOM05D002768 ORTHO05D002993 1.6e-06 55.8 57 56.1
Phvul.007G271900 Phaseolus vulgaris HOM05D002768 ORTHO05D002993 1.6e-06 55.8 59 50.8
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.1e-06 55.5 54 48.1
BraA07t30047Z Brassica rapa HOM05D002768 ORTHO05D002993 2.1e-06 55.5 49 59.2
THA.LOC104822247 Tarenaya hassleriana HOM05D002768 ORTHO05D002993 2.7e-06 55.1 59 52.5
Glyma.20G087600 Glycine max HOM05D002768 ORTHO05D002993 3.5e-06 54.7 59 49.2
MD13G1210000 Malus domestica HOM05D002768 ORTHO05D002993 3.5e-06 54.7 56 48.2
Mapoly0002s0103 Marchantia polymorpha HOM05D002768 ORTHO05D002993 3.5e-06 54.7 57 52.6
Sc25g0004060 Simmondsia chinensis HOM05D002768 ORTHO05D002993 3.5e-06 54.7 59 50.8
arahy.Tifrunner.gnm1.ann1.B57HAN Arachis hypogaea HOM05D000602 ORTHO05D011198 6.0e-06 53.9 42 66.7
Duzib212G0529 Durio zibethinus HOM05D002768 ORTHO05D002993 6.0e-06 53.9 59 50.8
Os02g0820700 Oryza sativa ssp. japonica HOM05D002768 ORTHO05D002993 6.0e-06 53.9 51 52.9
Duzib151G1077 Durio zibethinus HOM05D002768 ORTHO05D002993 7.9e-06 53.5 57 52.6
Thhalv10026530m.g Eutrema salsugineum HOM05D002768 ORTHO05D002993 7.9e-06 53.5 59 52.5


User provided reference genes

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