Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.8e-139 499.2 249 100.0
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 8.8e-134 480.3 249 96.8
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 4.0e-126 454.9 249 92.0
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 7.2e-112 407.5 250 83.2
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 6.1e-111 404.4 250 82.8
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 4.7e-95 351.7 246 72.4
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.6e-90 336.7 251 73.3
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 3.5e-90 335.5 251 72.9
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 3.5e-90 335.5 251 71.7
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 4.6e-90 335.1 254 70.5
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 4.6e-90 335.1 254 70.5
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 1.3e-89 333.6 251 70.9
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 4.3e-88 328.6 257 69.6
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 4.4e-85 318.5 256 67.2
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.7e-81 306.6 254 63.0
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 4.0e-78 295.4 253 64.0
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.5e-77 293.5 247 63.2
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.7e-76 290.0 252 63.5
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 3.8e-76 288.9 247 60.7
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 1.1e-75 287.3 242 62.4
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.1e-75 287.3 253 62.8
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 2.1e-74 283.1 249 61.0
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.0e-73 280.8 248 60.9
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.0e-73 280.8 252 61.9
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 3.0e-73 279.3 251 60.6
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 5.1e-73 278.5 255 58.8
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.9e-72 276.6 250 59.2
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 2.5e-72 276.2 255 56.9
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 4.3e-72 275.4 255 56.9
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 1.6e-71 273.5 234 59.8
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.8e-71 272.7 255 58.4
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.8e-71 272.7 193 69.4
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 3.1e-70 269.2 227 61.2
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 4.0e-70 268.9 244 59.4
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 4.0e-70 268.9 213 64.8
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 5.2e-70 268.5 244 58.6
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 5.2e-70 268.5 255 56.1
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 5.8e-69 265.0 247 57.9
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 2.2e-68 263.1 240 57.5
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 2.2e-68 263.1 246 60.2
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.9e-68 262.7 255 56.1
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 3.8e-68 262.3 243 59.3
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 4.9e-68 261.9 278 54.0
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 6.4e-68 261.5 253 56.5
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.4e-67 260.4 248 56.9
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 4.2e-67 258.8 237 59.5
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 5.4e-67 258.5 254 54.7
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 5.4e-67 258.5 234 58.1
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 7.1e-67 258.1 254 54.7
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 9.3e-67 257.7 254 54.7
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 2.7e-66 256.1 236 58.5
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.5e-66 255.8 249 53.0
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 4.6e-66 255.4 181 68.5
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 6.0e-66 255.0 222 58.6
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 1.0e-65 254.2 213 60.1
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 1.0e-65 254.2 213 60.1
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.0e-65 254.2 247 55.9
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.3e-65 253.8 206 67.0
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 5.1e-65 251.9 235 59.6
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.5e-64 250.4 204 63.2
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.9e-64 250.0 243 55.1
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 3.3e-64 249.2 216 59.3
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 3.3e-64 249.2 216 59.3
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 3.3e-64 249.2 216 59.3
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 9.6e-64 247.7 216 58.8
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 1.3e-63 247.3 215 60.0
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.3e-63 247.3 223 57.0
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 2.1e-63 246.5 187 65.8
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 2.1e-63 246.5 243 55.6
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 2.8e-63 246.1 180 68.9
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 2.8e-63 246.1 190 64.7
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.6e-63 245.7 248 52.8
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 3.6e-63 245.7 216 58.8
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 4.8e-63 245.4 241 56.0
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 4.8e-63 245.4 237 57.8
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 4.8e-63 245.4 242 54.5
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-62 243.8 239 51.9
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.4e-62 243.8 218 59.6
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.8e-62 243.4 252 52.4
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 3.1e-62 242.7 189 64.0
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 4.0e-62 242.3 177 67.2
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 5.3e-62 241.9 181 66.3
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 6.9e-62 241.5 247 54.3
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 6.9e-62 241.5 189 64.0
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 2.0e-61 240.0 175 66.3
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 4.5e-61 238.8 181 65.2
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 7.6e-61 238.0 236 53.8
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 9.9e-61 237.7 242 53.7
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 9.9e-61 237.7 244 53.7
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.9e-60 236.1 175 69.7
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 3.8e-60 235.7 181 63.5
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 3.8e-60 235.7 175 66.9
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 4.9e-60 235.3 184 64.1
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 4.9e-60 235.3 191 61.8
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.2e-59 232.3 148 75.7
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 5.4e-59 231.9 148 75.0
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 1.2e-58 230.7 186 65.1
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 3.5e-58 229.2 149 75.2
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 2.3e-57 226.5 253 52.2
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 8.7e-57 224.6 144 75.0
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.9e-56 223.4 176 63.6
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 4.3e-56 222.2 158 69.0
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 5.6e-56 221.9 169 65.7
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 5.6e-56 221.9 164 70.7
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 7.4e-56 221.5 153 71.9
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.3e-55 220.7 221 51.1
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.6e-55 220.3 267 47.6
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.8e-55 219.5 207 60.9
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 3.7e-55 219.2 134 78.4
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 8.1e-55 218.0 140 75.0
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.4e-54 217.2 184 60.9
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.8e-54 216.9 142 73.2
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 2.4e-54 216.5 140 73.6
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.1e-54 216.1 146 71.9
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 3.1e-54 216.1 175 60.0
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.3e-54 215.3 146 72.6
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 4.9e-52 208.8 129 78.3
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 1.2e-50 204.1 171 66.1
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 1.2e-50 204.1 238 45.8
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.1e-50 203.4 179 54.7
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 6.0e-50 201.8 151 63.6
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 6.0e-50 201.8 179 53.6
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.8e-49 200.3 178 57.3
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.3e-47 194.1 164 57.9
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 2.1e-47 193.4 158 64.6
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 4.0e-46 189.1 145 60.7
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.2e-45 187.6 137 64.2
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 2.0e-45 186.8 200 52.5
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 3.4e-45 186.0 138 67.4
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 9.3e-43 177.9 246 43.1
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 2.7e-42 176.4 256 42.6
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.3e-41 174.1 140 58.6
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 5.1e-41 172.2 172 57.6
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.5e-40 170.6 139 54.7
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.1e-38 164.5 160 55.6
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 2.6e-37 159.8 103 76.7
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 7.6e-37 158.3 177 52.5
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.3e-36 157.5 256 39.8
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 9.4e-35 151.4 142 60.6
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 3.6e-34 149.4 245 41.2
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.0e-33 147.9 180 47.8
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.7e-32 142.1 185 43.8
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 4.2e-27 125.9 159 48.4
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.3e-23 114.4 125 48.8
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.3e-20 104.4 79 63.3
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 9.4e-19 98.2 140 38.6
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 6.1e-18 95.5 160 34.4
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 8.2e-15 85.1 131 33.6
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 2.4e-14 83.6 83 59.0
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 3.5e-13 79.7 150 30.0
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 7.7e-13 78.6 151 33.8
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.6e-10 70.9 142 28.2
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.8e-09 67.4 152 31.6
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.8e-09 65.1 89 42.7
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.3e-06 55.8 80 45.0


User provided reference genes

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