Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 9.1e-265 916.4 470 100.0
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 2.5e-246 855.1 470 92.6
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 1.5e-190 669.8 479 74.7
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 1.0e-183 647.1 465 70.1
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 3.9e-183 645.2 466 69.1
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 9.0e-180 634.0 465 69.2
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 1.3e-178 630.2 464 69.4
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 1.1e-172 610.5 463 65.7
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 1.4e-172 610.1 463 65.7
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 1.8e-167 593.2 445 65.4
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 1.6e-165 586.6 449 64.4
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 1.6e-165 586.6 461 62.9
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 1.8e-164 583.2 445 64.0
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 2.0e-163 579.7 445 63.6
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 3.4e-163 578.9 445 63.4
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 4.5e-163 578.6 450 64.4
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 5.8e-163 578.2 461 63.1
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 5.8e-163 578.2 461 61.8
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 2.9e-162 575.9 450 61.8
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 2.7e-160 569.3 449 60.1
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 3.5e-160 568.9 465 64.3
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 3.5e-160 568.9 449 61.5
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 7.9e-160 567.8 455 61.3
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 1.8e-159 566.6 450 62.0
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 3.0e-159 565.8 450 61.3
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 3.9e-159 565.5 455 61.3
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 5.1e-159 565.1 450 61.6
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.9e-158 563.1 458 59.4
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.9e-158 563.1 458 59.4
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 5.7e-158 561.6 447 61.7
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 3.7e-157 558.9 450 60.2
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 4.8e-157 558.5 455 60.9
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 1.4e-156 557.0 457 58.2
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 3.1e-156 555.8 450 58.9
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 5.3e-156 555.1 452 59.3
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 6.9e-156 554.7 450 60.2
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 2.0e-155 553.1 449 59.5
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 4.5e-155 552.0 451 60.8
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 2.2e-154 549.7 462 58.0
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 3.8e-154 548.9 450 58.4
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 1.1e-153 547.4 451 60.5
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 2.5e-153 546.2 457 60.2
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 4.2e-153 545.4 443 59.4
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 1.2e-152 543.9 445 60.7
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 7.9e-152 541.2 448 60.7
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 2.3e-151 539.7 449 57.5
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 3.0e-151 539.3 449 56.3
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 8.8e-151 537.7 444 58.8
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 9.7e-150 534.3 461 57.3
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 2.2e-149 533.1 456 56.6
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 2.8e-149 532.7 456 57.2
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 4.8e-149 531.9 453 57.6
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 4.1e-148 528.9 451 57.9
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 5.3e-148 528.5 455 57.8
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 6.9e-148 528.1 449 55.7
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 2.0e-147 526.6 452 56.6
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 5.9e-147 525.0 461 56.2
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 1.0e-146 524.2 449 55.5
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 1.3e-146 523.9 449 55.7
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 2.9e-146 522.7 458 56.6
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 6.5e-146 521.5 449 57.9
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 8.5e-146 521.2 461 55.7
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 8.5e-146 521.2 449 57.5
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.1e-145 520.8 449 56.6
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 5.5e-145 518.5 450 56.2
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 9.4e-145 517.7 454 55.3
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 1.2e-144 517.3 464 56.2
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 3.6e-144 515.8 452 57.1
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 4.7e-144 515.4 452 56.9
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 7.9e-144 514.6 450 55.8
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 1.0e-143 514.2 452 56.6
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 1.0e-143 514.2 449 56.3
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 2.3e-143 513.1 453 56.5
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 3.9e-143 512.3 452 56.6
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 1.1e-142 510.8 457 56.7
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 1.1e-142 510.8 453 57.0
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.0e-142 510.0 452 55.1
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 5.7e-142 508.4 451 57.0
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 1.5e-139 500.4 452 56.0
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 1.7e-138 496.9 450 55.1
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 2.5e-137 493.0 450 54.0
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 6.7e-135 485.0 361 67.0
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 1.1e-134 484.2 456 54.4
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 4.8e-133 478.8 375 61.6
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 4.1e-132 475.7 449 52.1
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 7.5e-126 454.9 449 49.2
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 9.7e-126 454.5 456 52.6
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 9.7e-126 454.5 456 52.6
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 1.6e-123 447.2 374 61.0
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 3.5e-123 446.0 462 51.5
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 1.5e-121 440.7 343 60.6
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 1.8e-116 423.7 453 47.0
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 4.1e-116 422.5 357 57.7
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 3.6e-112 409.5 449 47.0
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 1.4e-111 407.5 453 45.3
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 4.0e-111 406.0 465 44.9
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 6.8e-111 405.2 343 57.4
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 9.8e-110 401.4 356 56.5
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 3.7e-109 399.4 453 48.6
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 7.3e-105 385.2 450 46.0
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 2.3e-98 363.6 309 55.7
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 1.5e-97 360.9 454 43.8
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 2.5e-97 360.1 461 42.1
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 6.8e-95 352.1 450 44.0
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 5.8e-94 349.0 269 60.6
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 1.1e-89 334.7 411 41.1
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 5.8e-86 322.4 356 49.7
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 4.3e-73 279.6 365 42.5
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 2.1e-67 260.8 331 39.6
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 3.3e-65 253.4 184 65.2
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.6e-64 251.1 167 67.1
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 2.1e-64 250.8 452 38.1
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 7.6e-62 242.3 255 50.2
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 8.4e-61 238.8 259 45.2
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 2.6e-54 217.2 195 55.9
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 4.2e-52 209.9 185 58.9
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 4.0e-47 193.4 169 56.2
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 7.1e-44 182.6 117 71.8
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 2.1e-43 181.0 145 74.5
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 1.0e-37 162.2 115 65.2
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 5.1e-34 149.8 143 52.4
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 3.3e-33 147.1 175 44.6
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 2.9e-21 107.5 62 71.0
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 3.5e-14 84.0 79 53.2
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 4.0e-10 70.5 62 54.8
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 6.3e-08 63.2 42 54.8
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.2e-06 58.9 75 38.7


User provided reference genes

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