Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G139000 Phaseolus vulgaris HOM05D002746 ORTHO05D003037 3.2e-195 685.3 445 100.0
Glyma.20G193800 Glycine max HOM05D002746 ORTHO05D003037 8.1e-130 468.0 436 65.4
VMungo0720G3138 Vigna mungo HOM05D002746 ORTHO05D003037 1.1e-126 457.6 445 65.4
Glyma.10G196400 Glycine max HOM05D002746 ORTHO05D003037 3.0e-124 449.5 452 62.4
Lj5g0007739 Lotus japonicus HOM05D002746 ORTHO05D003037 4.1e-81 306.2 452 47.8
Lalb_Chr21g0312871 Lupinus albus HOM05D002746 ORTHO05D003037 3.9e-76 289.7 435 49.4
arahy.Tifrunner.gnm1.ann1.89MG53 Arachis hypogaea HOM05D002746 ORTHO05D003037 4.8e-74 282.7 490 46.5
Lalb_Chr06g0169891 Lupinus albus HOM05D002746 ORTHO05D003037 1.4e-70 271.2 409 50.1
Lalb_Chr02g0151001 Lupinus albus HOM05D002746 ORTHO05D003037 8.2e-66 255.4 416 47.6
TPR.G37751 Trifolium pratense HOM05D002746 ORTHO05D003037 1.1e-65 255.0 426 45.3
arahy.Tifrunner.gnm1.ann1.NH0M87 Arachis hypogaea HOM05D002746 ORTHO05D003037 1.1e-62 245.0 490 43.5
Ca_10435_v3 Cicer arietinum L. HOM05D002746 ORTHO05D003037 1.9e-62 244.2 443 42.9
Medtr1g090657 Medicago truncatula HOM05D002746 ORTHO05D003037 6.7e-60 235.7 429 44.5
Psat6g172200 Pisum sativum HOM05D002746 ORTHO05D003037 4.7e-53 213.0 428 41.8
Thecc.10G087200 Theobroma cacao HOM05D002746 ORTHO05D003037 1.5e-30 138.3 431 33.2
CSS0002034 Camellia sinensis var. sinensis HOM05D002746 ORTHO05D003037 3.3e-30 137.1 426 33.6
MELO3C019841.2 Cucumis melo HOM05D002746 ORTHO05D003037 6.4e-26 122.9 445 30.6
CsaV3_2G021060 Cucumis sativus L. HOM05D002746 ORTHO05D003037 1.4e-25 121.7 428 31.3
ClCG08G007860 Citrullus lanatus HOM05D002746 ORTHO05D003037 4.1e-25 120.2 425 29.9
TWI63G0026 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 7.0e-25 119.4 432 31.0
TAR636G2586 Trochodendron aralioides HOM05D002746 ORTHO05D003037 1.2e-24 118.6 290 36.9
CiPaw.02G170900 Carya illinoinensis HOM05D002746 ORTHO05D003037 4.6e-24 116.7 443 34.5
Sed0007948 Sechium edule HOM05D002746 ORTHO05D003037 3.0e-23 114.0 449 29.6
COL.COLO4_09863 Corchorus olitorius HOM05D002746 ORTHO05D003037 6.6e-23 112.8 438 29.5
TWI38G1635 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 1.5e-22 111.7 475 30.3
GSVIVG01016210001 Vitis vinifera HOM05D002746 ORTHO05D003037 1.5e-22 111.7 431 28.5
vmacro10253 Vaccinium macrocarpon HOM05D002746 ORTHO05D003037 1.2e-21 108.6 473 29.0
Dinv36375 Davidia involucrata HOM05D002746 ORTHO05D003037 3.6e-21 107.1 313 31.9
Prupe.2G206000 Prunus persica HOM05D002746 ORTHO05D003037 3.6e-21 107.1 464 29.1
Nitab4.5_0000096g0260 Nicotiana tabacum HOM05D002746 ORTHO05D003037 6.2e-21 106.3 372 30.9
Oeu046646.1 Olea europaea HOM05D002746 ORTHO05D003037 1.1e-20 105.5 275 34.5
Rhsim09G0146600 Rhododendron simsii HOM05D002746 ORTHO05D003037 1.1e-20 105.5 452 28.8
CiPaw.01G266600 Carya illinoinensis HOM05D002746 ORTHO05D003037 1.4e-20 105.1 213 39.4
Atru.chr12.881 Acer truncatum HOM05D002746 ORTHO05D003037 1.8e-20 104.8 452 29.4
Cc02_g10720 Coffea canephora HOM05D002746 ORTHO05D003037 8.9e-20 102.4 408 28.7
TAR633G0282 Trochodendron aralioides HOM05D002746 ORTHO05D003037 2.6e-19 100.9 210 43.3
Gorai.010G207300 Gossypium raimondii HOM05D002746 ORTHO05D003037 3.4e-19 100.5 492 28.0
Actinidia06732 Actinidia chinensis HOM05D002746 ORTHO05D003037 4.4e-19 100.1 172 41.3
Sabra10G0177700 Salix brachista HOM05D002746 ORTHO05D003037 7.5e-19 99.4 446 28.3
Actinidia18545 Actinidia chinensis HOM05D002746 ORTHO05D003037 9.8e-19 99.0 250 34.4
MD07G1167400 Malus domestica HOM05D002746 ORTHO05D003037 1.3e-18 98.6 296 32.4
Cfa010292 Carpinus fangiana HOM05D002746 ORTHO05D003037 4.9e-18 96.7 263 35.7
Gohir.A06G168700 Gossypium hirsutum HOM05D002746 ORTHO05D003037 4.9e-18 96.7 430 30.0
HanXRQChr13g0404481 Helianthus annuus HOM05D002746 ORTHO05D003037 6.4e-18 96.3 292 33.2
Potri.010G229100 Populus trichocarpa HOM05D002746 ORTHO05D003037 8.3e-18 95.9 445 28.8
Haze_16759 Corylus avellana HOM05D002746 ORTHO05D003037 1.9e-17 94.7 506 29.1
Dinv31245 Davidia involucrata HOM05D002746 ORTHO05D003037 1.9e-17 94.7 361 29.1
Actinidia34797 Actinidia chinensis HOM05D001960 ORTHO05D004348 3.2e-17 94.0 319 32.9
Sc20g0001570 Simmondsia chinensis HOM05D002746 ORTHO05D003037 5.4e-17 93.2 240 36.2
TAR369G0776 Trochodendron aralioides HOM05D002746 ORTHO05D003037 5.4e-17 93.2 256 34.4
Nitab4.5_0002692g0020 Nicotiana tabacum HOM05D002746 ORTHO05D003037 2.1e-16 91.3 446 27.6
DCAR_019068 Daucus carota HOM05D002746 ORTHO05D003037 3.5e-16 90.5 413 29.1
Gohir.A05G292300 Gossypium hirsutum HOM05D002746 ORTHO05D003037 4.6e-16 90.1 234 35.9
Dinv29373 Davidia involucrata HOM05D002746 ORTHO05D003037 6.0e-16 89.7 228 35.1
MSTRG.9139 Avicennia marina HOM05D002746 ORTHO05D003037 7.8e-16 89.4 286 32.9
RcHm_v2.0_Chr1g0362201 Rosa chinensis HOM05D002746 ORTHO05D003037 1.3e-15 88.6 222 35.6
THA.LOC104816434 Tarenaya hassleriana HOM05D002746 ORTHO05D003037 3.9e-15 87.0 227 34.8
Cpa.g.sc53.153 Carica papaya HOM05D002746 ORTHO05D003037 5.1e-15 86.7 406 39.9
Prupe.6G111900 Prunus persica HOM05D002746 ORTHO05D003037 5.1e-15 86.7 263 31.6
QL08p053342 Quercus lobata HOM05D002746 ORTHO05D003037 5.1e-15 86.7 423 31.0
CSS0033737 Camellia sinensis var. sinensis HOM05D002746 ORTHO05D003037 6.6e-15 86.3 259 33.6
Hma1.2p1_0117F.1_g056370 Hydrangea macrophylla HOM05D002746 ORTHO05D003037 6.6e-15 86.3 269 33.1
Atru.chr3.3527 Acer truncatum HOM05D002746 ORTHO05D003037 8.6e-15 85.9 424 28.3
Nn2g13843 Nelumbo nucifera HOM05D002746 ORTHO05D003037 1.1e-14 85.5 403 28.3
Thecc.09G350400 Theobroma cacao HOM05D002746 ORTHO05D003037 2.5e-14 84.3 245 35.1
THA.LOC104826901 Tarenaya hassleriana HOM05D002746 ORTHO05D003037 3.3e-14 84.0 241 34.4
ECA232G1997 Erigeron canadensis HOM05D002746 ORTHO05D003037 5.6e-14 83.2 292 30.5
vmacro14395 Vaccinium macrocarpon HOM05D002746 ORTHO05D003037 9.5e-14 82.4 217 34.1
MSTRG.8123 Avicennia marina HOM05D002746 ORTHO05D003037 1.6e-13 81.6 275 32.0
MD01G1100300 Malus domestica HOM05D002746 ORTHO05D003037 1.6e-13 81.6 529 25.5
AUR62029178 Chenopodium quinoa HOM05D002746 ORTHO05D003037 2.8e-13 80.9 293 31.4
FvH4_7g18390 Fragaria vesca HOM05D002746 ORTHO05D003037 2.8e-13 80.9 450 26.7
FAN06G0235 Fragaria x ananassa HOM05D002746 ORTHO05D003037 2.8e-13 80.9 450 26.7
Gohir.D06G176308 Gossypium hirsutum HOM05D002746 ORTHO05D003037 2.8e-13 80.9 460 28.3
QL01p015272 Quercus lobata HOM05D002746 ORTHO05D003037 2.8e-13 80.9 250 34.0
PGR142G3471 Punica granatum HOM05D002746 ORTHO05D003037 3.6e-13 80.5 409 26.2
RcHm_v2.0_Chr5g0056951 Rosa chinensis HOM05D002746 ORTHO05D003037 3.6e-13 80.5 410 26.8
GSVIVG01031478001 Vitis vinifera HOM05D002746 ORTHO05D003037 3.6e-13 80.5 256 34.0
Gorai.009G309800 Gossypium raimondii HOM05D002746 ORTHO05D003037 4.7e-13 80.1 264 33.0
FAN06G2396 Fragaria x ananassa HOM05D002746 ORTHO05D003037 6.2e-13 79.7 450 26.4
Eucgr.B03933 Eucalyptus grandis HOM05D002746 ORTHO05D003037 8.1e-13 79.3 408 26.0
FAN10G3770 Fragaria x ananassa HOM05D002746 ORTHO05D003037 8.1e-13 79.3 450 25.8
Duzib170G0446 Durio zibethinus HOM05D002746 ORTHO05D003037 1.4e-12 78.6 273 31.9
Actinidia03695 Actinidia chinensis HOM05D002746 ORTHO05D003037 2.3e-12 77.8 209 32.5
CARHR208960 Cardamine hirsuta HOM05D002746 ORTHO05D003037 2.3e-12 77.8 259 30.5
CiPaw.13G123400 Carya illinoinensis HOM05D002746 ORTHO05D003037 2.3e-12 77.8 248 31.5
MBI13_g39327_MAGBIO Magnolia biondii HOM05D002746 ORTHO05D003037 2.3e-12 77.8 371 26.4
Nn6g35239 Nelumbo nucifera HOM05D002746 ORTHO05D003037 2.3e-12 77.8 282 33.3
Sopen11g003940 Solanum pennellii HOM05D002746 ORTHO05D003037 3.1e-12 77.4 268 32.1
TWI79G0630 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 3.1e-12 77.4 278 32.0
FAN10G1392 Fragaria x ananassa HOM05D002746 ORTHO05D003037 4.0e-12 77.0 449 25.8
TWI79G0510 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 4.0e-12 77.0 278 32.0
FAN03G0996 Fragaria x ananassa HOM05D002746 ORTHO05D003037 6.8e-12 76.3 450 26.4
Solyc11g008090.2 Solanum lycopersicum HOM05D002746 ORTHO05D003037 6.8e-12 76.3 265 30.9
CANSAT56G3275 Cannabis sativa HOM05D002746 ORTHO05D003037 8.9e-12 75.9 410 28.5
Migut.F01699 Erythranthe guttata HOM05D002746 ORTHO05D003037 8.9e-12 75.9 439 25.7
SGA_v2.0_scaffold2G01341 Striga asiatica HOM05D002746 ORTHO05D003037 8.9e-12 75.9 408 27.9
Aa31LG3G3050 Aethionema arabicum HOM05D002746 ORTHO05D003037 1.2e-11 75.5 293 29.4
CSS0020443 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 1.2e-11 75.5 215 32.1
CSS0026133 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 1.2e-11 75.5 215 32.1
Gohir.D05G293300 Gossypium hirsutum HOM05D002746 ORTHO05D003037 1.2e-11 75.5 266 32.3
Lj2A1009T38 Lonicera japonica HOM05D002746 ORTHO05D003037 1.2e-11 75.5 283 30.7
Potri.008G032600 Populus trichocarpa HOM05D002746 ORTHO05D003037 1.2e-11 75.5 448 29.5
Rhsim11G0027700 Rhododendron simsii HOM05D002746 ORTHO05D003037 1.5e-11 75.1 208 32.2
TWI75G0416 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 1.5e-11 75.1 240 31.2
MD11G1147400 Malus domestica HOM05D002746 ORTHO05D003037 2.0e-11 74.7 275 29.8
Solyc11g066350.2 Solanum lycopersicum HOM05D002746 ORTHO05D003037 3.4e-11 73.9 218 33.0
Duzib168G1483 Durio zibethinus HOM05D002746 ORTHO05D003037 5.8e-11 73.2 230 31.7
Migut.F01943 Erythranthe guttata HOM05D002746 ORTHO05D003037 5.8e-11 73.2 284 29.9
Potri.009G006100 Populus trichocarpa HOM05D002746 ORTHO05D003037 5.8e-11 73.2 277 28.5
MD03G1126800 Malus domestica HOM05D002746 ORTHO05D003037 7.6e-11 72.8 271 28.4
Sopen11g026100 Solanum pennellii HOM05D002746 ORTHO05D003037 7.6e-11 72.8 218 33.9
PGSC0003DMG400000414 Solanum tuberosum HOM05D002746 ORTHO05D003037 7.6e-11 72.8 218 33.0
ECA233G2466 Erigeron canadensis HOM05D000013 ORTHO05D000011 9.9e-11 72.4 424 27.1
FvH4_3g30760 Fragaria vesca HOM05D002746 ORTHO05D003037 9.9e-11 72.4 402 27.4
FAN21G0473 Fragaria x ananassa HOM05D002746 ORTHO05D003037 9.9e-11 72.4 426 27.9
Hund01439 Selenicereus undatus HOM05D002746 ORTHO05D003037 1.3e-10 72.0 213 33.8
MSTRG.17763 Avicennia marina HOM05D002746 ORTHO05D003037 2.2e-10 71.2 210 33.8
Cc01_g10360 Coffea canephora HOM05D002746 ORTHO05D003037 2.9e-10 70.9 205 31.2
Manes.07G094800 Manihot esculenta HOM05D002746 ORTHO05D003037 2.9e-10 70.9 401 32.4
CAN.G694.42 Capsicum annuum HOM05D002746 ORTHO05D003037 3.7e-10 70.5 254 31.5
PGR119G0855 Punica granatum HOM05D002746 ORTHO05D003037 3.7e-10 70.5 243 31.3
Dinv16215 Davidia involucrata HOM05D002746 ORTHO05D003037 6.4e-10 69.7 186 33.3
Sp3g08710 Schrenkiella parvula HOM05D002746 ORTHO05D003037 6.4e-10 69.7 383 28.5
Nitab4.5_0000329g0090 Nicotiana tabacum HOM05D002746 ORTHO05D003037 1.1e-09 68.9 213 32.9
FAN01G0726 Fragaria x ananassa HOM05D002746 ORTHO05D003037 1.4e-09 68.6 449 25.4
CARHR084940 Cardamine hirsuta HOM05D002746 ORTHO05D003037 1.9e-09 68.2 523 25.6
ECA233G0311 Erigeron canadensis HOM05D002746 ORTHO05D003037 1.9e-09 68.2 237 30.0
FAN16G2248 Fragaria x ananassa HOM05D002746 ORTHO05D003037 1.9e-09 68.2 410 26.6
Carub.0006s0327 Capsella rubella HOM05D002746 ORTHO05D003037 2.4e-09 67.8 207 31.4
Gohir.A05G107100 Gossypium hirsutum HOM05D002746 ORTHO05D003037 2.4e-09 67.8 203 32.0
Manes.04G013601 Manihot esculenta HOM05D002746 ORTHO05D003037 2.4e-09 67.8 210 34.3
FAN25G1769 Fragaria x ananassa HOM05D002746 ORTHO05D003037 3.2e-09 67.4 422 27.0
Gorai.009G111300 Gossypium raimondii HOM05D002746 ORTHO05D003037 3.2e-09 67.4 203 32.5
Lsat_1_v5_gn_9_71621 Lactuca sativa HOM05D002746 ORTHO05D003037 3.2e-09 67.4 223 30.9
Gohir.D05G107200 Gossypium hirsutum HOM05D002746 ORTHO05D003037 4.1e-09 67.0 196 33.2
Oeu007312.2 Olea europaea HOM05D002746 ORTHO05D003037 4.1e-09 67.0 246 30.9
Ciclev10028947m.g Citrus clementina HOM05D002746 ORTHO05D003037 5.4e-09 66.6 282 28.7
CAN.G459.30 Capsicum annuum HOM05D002746 ORTHO05D003037 7.1e-09 66.2 313 28.8
Potri.004G216000 Populus trichocarpa HOM05D002746 ORTHO05D003037 7.1e-09 66.2 237 29.5
EL10Ac9g22611 Beta vulgaris HOM05D002746 ORTHO05D003037 9.2e-09 65.9 309 29.4
Migut.N02561 Erythranthe guttata HOM05D002746 ORTHO05D003037 9.2e-09 65.9 256 30.1
HanXRQChr08g0218461 Helianthus annuus HOM05D002746 ORTHO05D003037 1.2e-08 65.5 87 42.5
Glyma.12G080700 Glycine max HOM05D002746 ORTHO05D003037 1.6e-08 65.1 205 28.8
Sp6g38420 Schrenkiella parvula HOM05D002746 ORTHO05D003037 2.1e-08 64.7 258 28.3
Glyma.11G193300 Glycine max HOM05D002746 ORTHO05D003037 2.7e-08 64.3 180 28.9
AT5G04320 Arabidopsis thaliana HOM05D002746 ORTHO05D003037 3.5e-08 63.9 429 24.7
Lsat_1_v5_gn_6_44580 Lactuca sativa HOM05D002746 ORTHO05D003037 4.6e-08 63.5 262 30.9
Medtr4g057530 Medicago truncatula HOM05D002746 ORTHO05D003037 4.6e-08 63.5 263 28.9
Nitab4.5_0004987g0050 Nicotiana tabacum HOM05D002746 ORTHO05D003037 4.6e-08 63.5 141 35.5
CAN.G546.40 Capsicum annuum HOM05D002746 ORTHO05D003037 7.8e-08 62.8 285 28.8
BolC9t59996H Brassica oleracea HOM05D002746 ORTHO05D003037 1.0e-07 62.4 187 30.5
Thhalv10013000m.g Eutrema salsugineum HOM05D002746 ORTHO05D003037 1.0e-07 62.4 192 30.7
Haze_23707 Corylus avellana HOM05D002746 ORTHO05D003037 1.3e-07 62.0 131 38.2
FAN11G2794 Fragaria x ananassa HOM05D002746 ORTHO05D003037 1.3e-07 62.0 416 26.4
SalBow6G2132 Salvia bowleyana HOM05D002746 ORTHO05D003037 1.3e-07 62.0 426 38.7
Actinidia20430 Actinidia chinensis HOM05D002746 ORTHO05D003037 5.1e-07 60.1 168 33.9
AL6G13940 Arabidopsis lyrata HOM05D002746 ORTHO05D003037 8.6e-07 59.3 424 23.8
BraA10t45230Z Brassica rapa HOM05D002746 ORTHO05D003037 8.6e-07 59.3 301 25.9
Nitab4.5_0002285g0050 Nicotiana tabacum HOM05D002746 ORTHO05D003037 8.6e-07 59.3 184 32.1
Phvul.011G085600 Phaseolus vulgaris HOM05D002746 ORTHO05D003037 8.6e-07 59.3 204 28.9
SalBow3G3794 Salvia bowleyana HOM05D002746 ORTHO05D003037 8.6e-07 59.3 211 29.9
SalBow4G2846 Salvia bowleyana HOM05D002746 ORTHO05D003037 1.1e-06 58.9 310 26.8
BcaC09g48090 Brassica carinata HOM05D002746 ORTHO05D003037 1.5e-06 58.5 410 27.1
Carub.0003s0965 Capsella rubella HOM05D002746 ORTHO05D003037 1.5e-06 58.5 505 23.8
BcaB04g21205 Brassica carinata HOM05D002746 ORTHO05D003037 1.9e-06 58.2 449 25.4
ClCG03G002610 Citrullus lanatus HOM05D002746 ORTHO05D003037 2.5e-06 57.8 101 37.6
CsaV3_1G013340 Cucumis sativus L. HOM05D002746 ORTHO05D003037 2.5e-06 57.8 192 29.7
A01p41810 Brassica napus HOM05D002746 ORTHO05D003037 3.3e-06 57.4 391 25.6
CDE04G0545 Ceratophyllum demersum HOM05D002746 ORTHO05D003037 3.3e-06 57.4 275 27.6
Lj3g0017780 Lotus japonicus HOM05D002746 ORTHO05D003037 7.3e-06 56.2 229 27.9
SGA_v2.0_scaffold51G18717 Striga asiatica HOM05D002746 ORTHO05D003037 9.6e-06 55.8 410 26.6


User provided reference genes

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