Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G138800 Phaseolus vulgaris HOM05D007308 ORTHO05D009157 2.0e-118 429.1 213 100.0
VMungo0720G2616 Vigna mungo HOM05D007308 ORTHO05D009157 3.5e-91 338.6 210 78.6
Glyma.20G194000 Glycine max HOM05D007308 ORTHO05D009157 3.0e-90 335.5 214 80.4
Glyma.10G196200 Glycine max HOM05D007308 ORTHO05D009157 3.0e-82 308.9 182 83.0
Medtr1g090630 Medicago truncatula HOM05D007308 ORTHO05D009157 2.3e-74 282.7 174 77.6
Lj5g0023307 Lotus japonicus HOM05D007308 ORTHO05D009157 1.3e-72 276.9 204 69.1
Lalb_Chr02g0150981 Lupinus albus HOM05D007308 ORTHO05D009157 2.8e-72 275.8 174 75.3
arahy.Tifrunner.gnm1.ann1.I1QH9V Arachis hypogaea HOM05D007308 ORTHO05D009157 1.3e-69 266.9 174 74.1
TAR623G1715 Trochodendron aralioides HOM05D007308 ORTHO05D009157 2.9e-69 265.8 171 75.4
arahy.Tifrunner.gnm1.ann1.ZU0NEU Arachis hypogaea HOM05D007308 ORTHO05D009157 3.8e-69 265.4 171 74.3
Dinv08592 Davidia involucrata HOM05D007308 ORTHO05D009157 7.2e-68 261.2 172 72.1
QL04p047115 Quercus lobata HOM05D007308 ORTHO05D009157 7.2e-68 261.2 167 73.7
Hma1.2p1_0457F.1_g156910 Hydrangea macrophylla HOM05D007308 ORTHO05D009157 3.6e-67 258.8 172 71.5
Potri.010G241700 Populus trichocarpa HOM05D007308 ORTHO05D009157 1.4e-66 256.9 172 73.8
THA.LOC104816471 Tarenaya hassleriana HOM05D007308 ORTHO05D009157 1.4e-66 256.9 172 70.3
GSVIVG01034647001 Vitis vinifera HOM05D007308 ORTHO05D009157 1.8e-66 256.5 172 71.5
CiPaw.13G043100 Carya illinoinensis HOM05D007308 ORTHO05D009157 8.8e-66 254.2 186 67.2
Rhsim09G0141500 Rhododendron simsii HOM05D007308 ORTHO05D009157 1.5e-65 253.4 182 66.5
PGR044G1814 Punica granatum HOM05D007308 ORTHO05D009157 2.5e-65 252.7 172 67.4
CDE02G0914 Ceratophyllum demersum HOM05D007308 ORTHO05D009157 1.3e-64 250.4 207 60.9
Sabra10G0189200 Salix brachista HOM05D000139 ORTHO05D000103 1.7e-64 250.0 172 72.1
CSS0004692 Camellia sinensis var. sinensis HOM05D007308 ORTHO05D009157 2.2e-64 249.6 175 66.9
Nn2g14273 Nelumbo nucifera HOM05D007308 ORTHO05D009157 2.2e-64 249.6 172 69.8
Aqoxy1G00692 Aquilegia oxysepala HOM05D007308 ORTHO05D009157 8.2e-64 247.7 172 68.6
MBI17_g22148_MAGBIO Magnolia biondii HOM05D007308 ORTHO05D009157 1.4e-63 246.9 172 69.8
Prupe.2G071800 Prunus persica HOM05D007308 ORTHO05D009157 1.4e-63 246.9 161 69.6
Thecc.10G116800 Theobroma cacao HOM05D007308 ORTHO05D009157 1.4e-63 246.9 168 70.2
Duzib106G1839 Durio zibethinus HOM05D007308 ORTHO05D009157 4.1e-63 245.4 157 73.2
MD07G1062000 Malus domestica HOM05D007308 ORTHO05D009157 6.9e-63 244.6 153 74.5
Lalb_Chr21g0312841 Lupinus albus HOM05D007308 ORTHO05D009157 9.1e-63 244.2 167 68.3
Lsat_1_v5_gn_3_53161 Lactuca sativa HOM05D007308 ORTHO05D009157 2.0e-62 243.0 160 69.4
vmacro10315 Vaccinium macrocarpon HOM05D007308 ORTHO05D009157 2.0e-62 243.0 184 62.5
MSTRG.27555 Avicennia marina HOM05D007308 ORTHO05D009157 3.4e-62 242.3 172 68.6
Gohir.D13G010000 Gossypium hirsutum HOM05D007308 ORTHO05D009157 3.8e-61 238.8 159 69.2
TWI15G0952 Tripterygium wilfordii HOM05D007308 ORTHO05D009157 3.8e-61 238.8 195 62.1
Eucgr.J00279 Eucalyptus grandis HOM05D007308 ORTHO05D009157 5.0e-61 238.4 172 65.7
CANSAT56G1109 Cannabis sativa HOM05D007308 ORTHO05D009157 8.5e-61 237.7 172 68.0
AL6G14490 Arabidopsis lyrata HOM05D007308 ORTHO05D009157 1.1e-60 237.3 159 68.6
ECA232G3668 Erigeron canadensis HOM05D007308 ORTHO05D009157 1.4e-60 236.9 160 70.0
Ciclev10016517m.g Citrus clementina HOM05D007308 ORTHO05D009157 1.9e-60 236.5 172 66.3
Haze_03470 Corylus avellana HOM05D007308 ORTHO05D009157 1.9e-60 236.5 181 65.2
Gohir.A13G009300 Gossypium hirsutum HOM05D007308 ORTHO05D009157 3.2e-60 235.7 159 68.6
Gorai.013G010700 Gossypium raimondii HOM05D007308 ORTHO05D009157 3.2e-60 235.7 159 68.6
Hund06794 Selenicereus undatus HOM05D007308 ORTHO05D009157 3.2e-60 235.7 207 56.5
PGR044G1810 Punica granatum HOM05D007308 ORTHO05D009157 5.5e-60 235.0 174 64.4
Sabra08G0011300 Salix brachista HOM05D007308 ORTHO05D009157 5.5e-60 235.0 157 72.0
AT5G04830 Arabidopsis thaliana HOM05D007308 ORTHO05D009157 9.4e-60 234.2 159 67.9
BcaC06g32190 Brassica carinata HOM05D007308 ORTHO05D009157 1.2e-59 233.8 158 67.7
A10p31380 Brassica napus HOM05D007308 ORTHO05D009157 1.6e-59 233.4 158 67.7
HanXRQChr05g0147281 Helianthus annuus HOM05D007308 ORTHO05D009157 1.6e-59 233.4 176 63.6
Sp6g38000 Schrenkiella parvula HOM05D007308 ORTHO05D009157 2.1e-59 233.0 157 68.2
C09p72050 Brassica napus HOM05D007308 ORTHO05D009157 2.7e-59 232.6 158 67.7
Carub.0006s0371 Capsella rubella HOM05D007308 ORTHO05D009157 2.7e-59 232.6 159 66.7
Lj3C924T9 Lonicera japonica HOM05D007308 ORTHO05D009157 2.7e-59 232.6 204 57.4
Sc20g0001110 Simmondsia chinensis HOM05D007308 ORTHO05D009157 3.6e-59 232.3 169 67.5
Cc02_g09470 Coffea canephora HOM05D007308 ORTHO05D009157 6.1e-59 231.5 172 62.8
Migut.F00856 Erythranthe guttata HOM05D007308 ORTHO05D009157 7.9e-59 231.1 172 65.1
Peaxi162Scf00725g00524 Petunia axillaris HOM05D007308 ORTHO05D009157 7.9e-59 231.1 177 65.5
PSO339G2601 Papaver somniferum HOM05D007308 ORTHO05D009157 1.8e-58 229.9 172 61.6
BcaB01g05916 Brassica carinata HOM05D007308 ORTHO05D009157 2.3e-58 229.6 186 58.6
C03p02230 Brassica napus HOM05D007308 ORTHO05D009157 2.3e-58 229.6 156 67.3
BolC3t12774H Brassica oleracea HOM05D007308 ORTHO05D009157 2.3e-58 229.6 156 67.3
Aa31LG11G5650 Aethionema arabicum HOM05D007308 ORTHO05D009157 3.0e-58 229.2 156 67.3
ClCG05G021890 Citrullus lanatus HOM05D007308 ORTHO05D009157 3.0e-58 229.2 170 64.1
PSO384G3587 Papaver somniferum HOM05D007308 ORTHO05D009157 3.0e-58 229.2 172 62.2
CARHR208450 Cardamine hirsuta HOM05D007308 ORTHO05D009157 3.9e-58 228.8 161 65.8
Sed0004755 Sechium edule HOM05D007308 ORTHO05D009157 5.1e-58 228.4 170 64.7
HPP92_005473 Vanilla planifolia HOM05D007308 ORTHO05D009157 5.1e-58 228.4 182 59.3
BolC9t59950H Brassica oleracea HOM05D007308 ORTHO05D009157 2.0e-57 226.5 166 64.5
BraA10t45184Z Brassica rapa HOM05D007308 ORTHO05D009157 2.6e-57 226.1 166 64.5
Os01g0965900 Oryza sativa ssp. japonica HOM05D007308 ORTHO05D009157 4.4e-57 225.3 151 68.9
A03p01870 Brassica napus HOM05D007308 ORTHO05D009157 5.7e-57 224.9 156 66.7
BraA03t09557Z Brassica rapa HOM05D007308 ORTHO05D009157 5.7e-57 224.9 156 66.7
Nitab4.5_0001047g0020 Nicotiana tabacum HOM05D007308 ORTHO05D009157 7.4e-57 224.6 163 67.5
PGSC0003DMG400001980 Solanum tuberosum HOM05D007308 ORTHO05D009157 2.2e-56 223.0 173 65.9
CsaV3_5G035250 Cucumis sativus L. HOM05D007308 ORTHO05D009157 2.8e-56 222.6 170 63.5
Thhalv10014751m.g Eutrema salsugineum HOM05D007308 ORTHO05D009157 4.8e-56 221.9 157 65.0
Sed0002245 Sechium edule HOM05D007308 ORTHO05D009157 6.3e-56 221.5 166 63.9
SalBow3G3836 Salvia bowleyana HOM05D007308 ORTHO05D009157 1.4e-55 220.3 175 62.9
Zm00001eb362380 Zea mays HOM05D007308 ORTHO05D009157 7.0e-55 218.0 154 64.3
ATR0772G202 Amborella trichopoda HOM05D007308 ORTHO05D009157 3.5e-54 215.7 177 58.2
unitig_32.g11899 Utricularia gibba HOM05D007308 ORTHO05D009157 4.5e-54 215.3 163 63.2
SGA_v2.0_scaffold272G46352 Striga asiatica HOM05D007308 ORTHO05D009157 2.9e-53 212.6 156 66.0
CSS0017788 Camellia sinensis var. sinensis HOM05D007308 ORTHO05D009157 6.1e-51 204.9 175 57.7
Mapoly0021s0141 Marchantia polymorpha HOM05D007308 ORTHO05D009157 1.8e-50 203.4 187 52.9
Manes.10G060700 Manihot esculenta HOM05D007308 ORTHO05D009157 3.7e-48 195.7 121 75.2
Sopen11g002410 Solanum pennellii HOM05D007308 ORTHO05D009157 1.8e-47 193.4 137 68.6
Solyc11g006505.1 Solanum lycopersicum HOM05D007308 ORTHO05D009157 2.4e-47 193.0 137 67.9
SEGI_14438 Sequoiadendron giganteum HOM05D007308 ORTHO05D009157 2.7e-46 189.5 150 62.0
Pp3c19_15880 Physcomitrium patens HOM05D007308 ORTHO05D009157 3.5e-46 189.1 157 57.3
AagrBONN_evm.TU.Sc2ySwM_344.2550 Anthoceros agrestis HOM05D007308 ORTHO05D009157 5.9e-46 188.3 201 51.2
MELO3C012339.2 Cucumis melo HOM05D007308 ORTHO05D009157 1.7e-45 186.8 149 61.7
Actinidia34730 Actinidia chinensis HOM05D000139 ORTHO05D000103 3.8e-45 185.7 145 60.7
SMO143G0271 Selaginella moellendorffii HOM05D007308 ORTHO05D009157 1.5e-44 183.7 157 58.6
Pp3c14_20980 Physcomitrium patens HOM05D007308 ORTHO05D009157 5.5e-44 181.8 169 53.8
RcHm_v2.0_Chr1g0331851 Rosa chinensis HOM05D007308 ORTHO05D009157 1.2e-43 180.6 138 67.4
CiPaw.14G034600 Carya illinoinensis HOM05D007308 ORTHO05D009157 1.4e-42 177.2 115 69.6
SEGI_29808 Sequoiadendron giganteum HOM05D007308 ORTHO05D009157 5.7e-41 171.8 138 60.1
SMO265G0003 Selaginella moellendorffii HOM05D007308 ORTHO05D009157 1.8e-39 166.8 154 56.5
Pp3c1_28520 Physcomitrium patens HOM05D007308 ORTHO05D009157 1.3e-32 144.1 119 58.0
Potri.008G017701 Populus trichocarpa HOM05D007308 ORTHO05D009157 5.2e-26 122.1 83 68.7
BcaNung05151 Brassica carinata HOM05D007308 ORTHO05D009157 2.0e-25 120.2 200 38.5
Atru.BG.262.p Acer truncatum HOM05D007308 ORTHO05D009157 3.7e-24 115.9 80 67.5
Pp3c2_31450 Physcomitrium patens HOM05D007308 ORTHO05D009157 1.3e-21 107.5 126 46.8
CBR_g30213 Chara braunii HOM05D007308 ORTHO05D009157 7.5e-17 91.7 149 37.6
Actinidia27055 Actinidia chinensis HOM05D007308 ORTHO05D009157 4.6e-14 82.4 90 52.2
PGSC0003DMG400007605 Solanum tuberosum HOM05D000011 ORTHO05D000018 9.8e-09 64.7 44 63.6
Sopen11g002430 Solanum pennellii HOM05D000011 ORTHO05D000018 3.2e-07 59.7 53 52.8


User provided reference genes

Program Settings