Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 0.0e+00 1956.4 1005 100.0
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 0.0e+00 1648.3 1001 84.5
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 0.0e+00 1568.5 905 89.4
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 0.0e+00 1522.7 945 82.5
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 0.0e+00 1416.0 976 74.3
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 0.0e+00 1355.5 991 69.2
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 0.0e+00 1295.4 969 69.1
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 0.0e+00 1291.6 1017 66.6
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 0.0e+00 1284.6 970 68.2
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 0.0e+00 1251.9 897 71.0
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 0.0e+00 1214.9 927 68.9
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 4.9e-308 1061.2 1003 55.5
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 8.3e-300 1033.9 957 56.0
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 2.5e-296 1022.3 1053 52.3
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 9.9e-293 1010.4 1014 53.0
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 2.2e-292 1009.2 944 54.0
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 3.5e-290 1001.9 1018 52.7
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 8.6e-289 997.3 1005 51.1
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 8.6e-289 997.3 1005 51.2
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 8.6e-289 997.3 1007 51.0
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 5.2e-286 988.0 1005 51.0
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 4.6e-282 974.9 1014 51.5
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 3.9e-281 971.8 949 52.8
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 5.1e-281 971.5 1006 50.7
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 1.6e-279 966.5 1002 51.0
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 1.6e-279 966.5 1019 51.0
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 8.1e-279 964.1 1011 51.6
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 2.4e-275 952.6 1005 50.7
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 2.7e-274 949.1 1014 50.2
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 6.0e-274 948.0 1001 50.0
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 9.6e-272 940.6 1002 50.4
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 1.3e-271 940.3 1015 50.1
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 3.8e-268 928.7 961 51.1
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.1e-267 927.2 1028 49.3
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 3.9e-265 918.7 1017 49.1
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 2.4e-262 909.4 1050 47.4
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 3.1e-262 909.1 904 53.1
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 4.9e-260 901.7 1009 48.6
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 7.1e-259 897.9 882 52.5
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 3.4e-253 879.0 1018 48.4
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 4.5e-253 878.6 1006 46.4
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 3.2e-251 872.5 1020 47.0
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 4.3e-248 862.1 1001 45.8
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 8.2e-247 857.8 1028 44.5
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 3.8e-244 849.0 1043 45.9
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 1.1e-243 847.4 1008 45.1
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 2.7e-242 842.8 990 46.0
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 2.3e-241 839.7 1013 46.3
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 6.7e-241 838.2 990 46.8
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.5e-240 837.0 966 45.8
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 2.5e-240 836.3 1048 43.5
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 1.7e-239 833.6 903 50.3
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 4.8e-239 832.0 1003 45.0
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 6.3e-239 831.6 1008 45.9
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 1.4e-238 830.5 1063 45.2
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 4.1e-238 828.9 992 45.2
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 1.5e-237 827.0 963 46.5
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 1.4e-233 813.9 1014 44.4
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 5.7e-232 808.5 1002 44.8
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 1.2e-229 800.8 1004 43.4
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 2.9e-228 796.2 837 50.7
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 2.9e-228 796.2 913 45.6
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 1.9e-227 793.5 961 47.0
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 1.4e-225 787.3 1003 43.5
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 1.5e-224 783.9 1006 42.4
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 1.5e-224 783.9 996 43.1
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 2.6e-221 773.1 1012 42.7
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 1.7e-220 770.4 1008 44.2
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 2.2e-220 770.0 1007 42.7
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 3.8e-220 769.2 1006 42.4
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 1.1e-219 767.7 1006 41.8
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 2.5e-219 766.5 1007 42.6
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 6.7e-217 758.4 1020 41.6
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 2.6e-216 756.5 894 46.5
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 5.7e-216 755.4 1003 42.5
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 2.2e-215 753.4 1010 42.2
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 2.8e-215 753.1 1007 41.7
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 1.6e-213 747.3 917 43.5
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 5.9e-213 745.3 771 50.6
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 1.3e-212 744.2 1004 41.3
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 2.2e-212 743.4 883 44.4
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 7.5e-208 728.4 934 43.4
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 8.3e-207 724.9 912 45.0
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 5.4e-206 722.2 949 42.7
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 4.9e-199 699.1 1025 40.1
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 7.0e-198 695.3 1014 39.5
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 3.3e-195 686.4 1000 39.5
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 2.8e-194 683.3 1031 40.6
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 1.7e-191 674.1 1034 39.8
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 2.0e-189 667.2 660 53.0
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 2.0e-189 667.2 802 46.1
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 4.6e-189 666.0 910 41.9
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 1.6e-186 657.5 711 49.2
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 1.4e-166 591.3 1017 35.9
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 2.4e-166 590.5 836 40.1
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 5.4e-158 562.8 681 45.1
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 3.3e-155 553.5 940 38.4
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 4.8e-154 549.7 874 38.4
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 2.5e-147 527.3 1040 33.7
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 9.0e-129 465.7 910 33.5
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 2.5e-123 447.6 1012 30.3
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 1.6e-93 348.6 262 66.4
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 4.4e-67 260.8 1002 24.6
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 3.3e-54 218.0 631 28.1
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 4.4e-51 207.6 682 27.7
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.2e-48 199.5 318 37.1
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 1.3e-39 169.5 186 48.4
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 1.3e-31 142.9 450 26.9
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 9.0e-28 130.2 143 49.7
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 4.6e-24 117.9 820 23.4
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 2.1e-16 92.4 136 38.2
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 3.1e-12 78.6 121 33.1
TPR.G13394 Trifolium pratense HOM05D060940 ORTHO05D048947 1.4e-09 69.7 46 71.7


User provided reference genes

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