Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 9.9e-46 186.4 94 100.0
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.0e-42 176.4 94 91.5
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 6.2e-40 167.2 94 87.2
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 2.7e-35 151.8 99 76.8
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 4.9e-29 131.0 86 76.7
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 1.9e-28 129.0 100 70.0
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 9.3e-28 126.7 102 68.6
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 2.5e-25 118.6 94 70.2
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 6.2e-24 114.0 86 68.6
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 3.4e-22 108.2 103 61.2
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 4.5e-22 107.8 105 58.1
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 4.9e-21 104.4 99 65.7
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 8.4e-21 103.6 96 60.4
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.4e-20 102.8 96 59.4
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 3.2e-20 101.7 94 66.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.6e-19 99.4 97 63.9
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.6e-19 99.4 92 60.9
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 1.6e-19 99.4 96 57.3
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 4.6e-19 97.8 100 57.0
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.6e-19 97.8 96 57.3
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.6e-19 97.8 96 57.3
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 6.0e-19 97.4 90 60.0
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.0e-19 97.4 98 54.1
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.9e-19 97.1 98 54.1
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.9e-19 97.1 98 54.1
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 3.0e-18 95.1 96 55.2
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 3.9e-18 94.7 97 61.9
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 5.1e-18 94.4 94 59.6
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 6.7e-18 94.0 110 55.5
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 6.7e-18 94.0 105 56.2
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.1e-17 93.2 100 56.0
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.5e-17 92.8 91 56.0
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.5e-17 92.8 99 54.5
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 1.5e-17 92.8 112 56.2
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.5e-17 92.8 84 61.9
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.5e-17 92.8 113 51.3
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.5e-17 92.0 113 54.9
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.5e-17 92.0 91 60.4
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.3e-17 91.3 109 56.9
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 5.7e-17 90.9 85 57.6
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.4e-17 90.5 96 55.2
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 9.7e-17 90.1 83 61.4
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 9.7e-17 90.1 99 54.5
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.3e-16 89.7 104 55.8
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.3e-16 89.7 103 54.4
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.3e-16 89.7 96 53.1
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.6e-16 89.4 100 58.0
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.6e-16 89.4 82 62.2
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.6e-16 89.4 96 52.1
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.6e-16 89.4 96 52.1
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 2.8e-16 88.6 99 50.5
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.8e-16 88.6 79 62.0
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 6.3e-16 87.4 92 62.0
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 8.2e-16 87.0 97 52.6
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 8.2e-16 87.0 101 52.5
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 8.2e-16 87.0 94 51.1
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 8.2e-16 87.0 88 56.8
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.1e-15 86.7 97 58.8
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.4e-15 85.5 99 51.5
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 2.4e-15 85.5 83 56.6
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 2.4e-15 85.5 91 59.3
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 2.4e-15 85.5 85 58.8
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.1e-15 85.1 91 54.9
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 3.1e-15 85.1 92 58.7
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 3.1e-15 85.1 94 53.2
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.1e-15 84.7 109 56.0
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 5.3e-15 84.3 92 52.2
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 6.9e-15 84.0 89 53.9
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 9.0e-15 83.6 100 53.0
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 9.0e-15 83.6 88 61.4
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 9.0e-15 83.6 95 57.9
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 9.0e-15 83.6 87 57.5
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 9.0e-15 83.6 92 55.4
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 9.0e-15 83.6 101 51.5
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 1.2e-14 83.2 99 51.5
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.2e-14 83.2 84 56.0
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.0e-14 82.4 92 51.1
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.0e-14 82.4 103 50.5
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 2.6e-14 82.0 98 52.0
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 3.4e-14 81.6 96 49.0
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 3.4e-14 81.6 96 49.0
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.5e-14 81.3 103 49.5
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.5e-14 81.3 92 52.2
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.5e-14 81.3 92 52.2
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.5e-14 81.3 101 50.5
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 5.9e-14 80.9 94 50.0
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 7.7e-14 80.5 93 50.5
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 7.7e-14 80.5 90 53.3
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.7e-14 80.5 92 52.2
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 7.7e-14 80.5 99 49.5
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 7.7e-14 80.5 99 49.5
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.0e-13 80.1 95 54.7
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 1.0e-13 80.1 94 51.1
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.0e-13 80.1 92 55.4
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-13 79.7 94 54.3
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.3e-13 79.7 100 51.0
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-13 79.7 103 48.5
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.3e-13 79.7 96 46.9
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.7e-13 79.3 85 54.1
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.7e-13 79.3 104 49.0
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.2e-13 79.0 108 47.2
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 2.2e-13 79.0 98 45.9
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.9e-13 78.6 98 55.1
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.9e-13 78.6 100 51.0
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.8e-13 78.2 94 56.4
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.0e-13 77.8 98 51.0
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 6.5e-13 77.4 94 52.1
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 6.5e-13 77.4 78 56.4
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 6.5e-13 77.4 93 49.5
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 8.5e-13 77.0 86 52.3
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.1e-12 76.6 94 50.0
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.1e-12 76.6 95 53.7
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 1.1e-12 76.6 100 51.0
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 1.1e-12 76.6 97 51.5
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.4e-12 76.3 90 51.1
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.9e-12 75.9 81 53.1
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 3.2e-12 75.1 101 50.5
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 3.2e-12 75.1 94 56.4
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.2e-12 75.1 98 50.0
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 5.5e-12 74.3 96 51.0
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 5.5e-12 74.3 100 49.0
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 5.5e-12 74.3 98 44.9
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 7.2e-12 73.9 96 51.0
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 7.2e-12 73.9 123 43.9
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 9.4e-12 73.6 95 52.6
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 9.4e-12 73.6 90 50.0
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-11 73.2 94 51.1
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.6e-11 72.8 82 53.7
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.6e-11 72.8 98 46.9
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.1e-11 72.4 108 49.1
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.6e-11 71.6 91 45.1
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 4.6e-11 71.2 103 44.7
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 6.1e-11 70.9 103 44.7
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 6.1e-11 70.9 103 44.7
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 7.9e-11 70.5 99 46.5
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 7.9e-11 70.5 95 48.4
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.0e-10 70.1 94 50.0
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 1.0e-10 70.1 88 48.9
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.0e-10 70.1 104 44.2
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 1.4e-10 69.7 97 48.5
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.4e-10 69.7 122 44.3
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.4e-10 69.7 122 44.3
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.8e-10 69.3 88 51.1
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 3.9e-10 68.2 82 52.4
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 3.9e-10 68.2 82 52.4
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.9e-10 68.2 82 53.7
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 6.7e-10 67.4 83 51.8
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 6.7e-10 67.4 91 46.2
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.1e-09 66.6 104 46.2
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.1e-09 66.6 104 46.2
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.1e-09 66.6 104 46.2
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 1.5e-09 66.2 88 44.3
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 2.0e-09 65.9 85 54.1
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.0e-09 65.9 88 47.7
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 2.5e-09 65.5 82 50.0
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 2.5e-09 65.5 101 44.6
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 4.3e-09 64.7 82 50.0
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 9.7e-09 63.5 90 45.6
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 9.7e-09 63.5 90 48.9
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.3e-08 63.2 104 43.3
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-08 63.2 82 48.8
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.3e-08 63.2 82 48.8
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.7e-08 62.8 82 51.2
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 2.8e-08 62.0 81 51.9
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 2.8e-08 62.0 81 51.9
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 3.7e-08 61.6 115 35.7
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 4.8e-08 61.2 111 40.5
Lalb_Chr03g0037101 Lupinus albus HOM05D003940 ORTHO05D004461 6.3e-08 60.8 74 44.6
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 8.2e-08 60.5 96 41.7
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 1.8e-07 59.3 71 47.9
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 1.8e-07 59.3 81 48.1
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 2.4e-07 58.9 86 39.5
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 3.1e-07 58.5 84 47.6
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 5.3e-07 57.8 97 39.2
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.9e-07 57.4 118 39.0
ATR0680G398 Amborella trichopoda HOM05D003940 ORTHO05D004461 9.1e-07 57.0 75 45.3


User provided reference genes

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