Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G128900 Phaseolus vulgaris HOM05D007315 ORTHO05D008940 0.0e+00 1290.4 684 100.0
VMungo0720G0938 Vigna mungo HOM05D007315 ORTHO05D008940 0.0e+00 1077.4 674 84.0
Glyma.10G188000 Glycine max HOM05D007315 ORTHO05D008940 8.0e-270 933.7 694 74.4
Glyma.20G202800 Glycine max HOM05D007315 ORTHO05D008940 1.2e-257 893.3 672 72.2
Lalb_Chr02g0150561 Lupinus albus HOM05D007315 ORTHO05D008940 8.7e-200 701.0 689 60.2
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 1.8e-192 676.8 681 58.9
Ca_09817_v3 Cicer arietinum L. HOM05D007315 ORTHO05D008940 5.5e-186 655.2 699 56.2
arahy.Tifrunner.gnm1.ann1.K0K7GF Arachis hypogaea HOM05D007315 ORTHO05D008940 4.1e-173 612.5 682 53.2
Medtr1g073930 Medicago truncatula HOM05D007315 ORTHO05D008940 1.2e-169 600.9 684 55.3
TPR.G26430 Trifolium pratense HOM05D007315 ORTHO05D008940 1.1e-167 594.3 689 55.0
Psat6g133000 Pisum sativum HOM05D007315 ORTHO05D008940 2.7e-156 556.6 693 52.5
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 7.5e-151 538.5 687 48.9
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 2.1e-105 387.5 720 39.4
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 2.2e-102 377.5 650 42.6
Cfa008519 Carpinus fangiana HOM05D007315 ORTHO05D008940 3.8e-102 376.7 719 39.1
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 3.2e-101 373.6 650 42.5
CiPaw.02G125100 Carya illinoinensis HOM05D007315 ORTHO05D008940 3.2e-93 347.1 678 40.0
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 5.4e-93 346.3 645 41.4
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 9.3e-85 318.9 652 39.3
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 4.6e-84 316.6 671 39.3
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 6.7e-83 312.8 650 37.8
CANSAT78G2341 Cannabis sativa HOM05D007315 ORTHO05D008940 2.5e-82 310.8 651 38.2
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 4.5e-79 300.1 680 38.5
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 8.4e-78 295.8 652 36.7
CsaV3_2G011220 Cucumis sativus L. HOM05D007315 ORTHO05D008940 3.2e-77 293.9 650 35.2
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 2.1e-76 291.2 666 36.8
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 4.6e-76 290.0 729 36.1
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 7.9e-76 289.3 668 37.6
RcHm_v2.0_Chr2g0084511 Rosa chinensis HOM05D007315 ORTHO05D008940 1.3e-75 288.5 657 37.4
FAN26G2088 Fragaria x ananassa HOM05D007315 ORTHO05D008940 6.7e-75 286.2 703 35.8
FAN26G2097 Fragaria x ananassa HOM05D007315 ORTHO05D008940 6.7e-75 286.2 703 35.8
MELO3C020340.2 Cucumis melo HOM05D007315 ORTHO05D008940 1.5e-74 285.0 646 35.3
FAN28G1745 Fragaria x ananassa HOM05D007315 ORTHO05D008940 4.8e-73 280.0 649 37.1
FAN23G0376 Fragaria x ananassa HOM05D007315 ORTHO05D008940 2.6e-71 274.2 705 35.2
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 2.6e-71 274.2 666 36.5
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 1.0e-70 272.3 653 36.9
MD15G1142800 Malus domestica HOM05D007315 ORTHO05D008940 1.3e-70 271.9 717 34.2
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 3.8e-70 270.4 647 36.2
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 6.7e-67 259.6 646 34.8
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 1.5e-66 258.5 618 36.6
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 4.3e-66 256.9 635 34.8
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 1.1e-64 252.3 655 34.7
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 1.4e-64 251.9 655 35.0
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 3.1e-64 250.8 731 34.3
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 4.5e-63 246.9 645 34.4
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.0e-62 245.7 594 35.0
FvH4_1g00220 Fragaria vesca HOM05D007315 ORTHO05D008940 6.5e-62 243.0 649 35.3
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 7.9e-60 236.1 664 34.5
CSS0008240 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 3.9e-59 233.8 455 38.2
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 1.1e-56 225.7 652 32.7
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 1.2e-55 222.2 597 33.8
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 3.4e-55 220.7 504 36.1
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 1.0e-54 219.2 658 33.1
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 7.2e-53 213.0 640 31.9
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 4.7e-52 210.3 656 32.5
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 6.1e-52 209.9 412 40.5
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 2.8e-49 201.1 474 35.7
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 1.6e-47 195.3 690 31.2
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 1.7e-46 191.8 472 33.5
THA.LOC104802348 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 8.5e-46 189.5 462 34.0
MD00G1086900 Malus domestica HOM05D007315 ORTHO05D008940 1.6e-44 185.3 580 31.6
THA.LOC104804323 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 4.7e-44 183.7 732 30.6
QL10p064445 Quercus lobata HOM05D007315 ORTHO05D008940 2.0e-42 178.3 334 42.8
PGR042G2132 Punica granatum HOM05D007315 ORTHO05D008940 2.8e-41 174.5 669 29.9
Carub.0004s2655 Capsella rubella HOM05D007315 ORTHO05D008940 3.7e-41 174.1 647 29.2
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 5.3e-40 170.2 565 30.8
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 9.1e-40 169.5 483 33.5
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 1.2e-39 169.1 644 31.1
Sc19g0002390 Simmondsia chinensis HOM05D007315 ORTHO05D008940 1.2e-39 169.1 612 31.0
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 1.6e-39 168.7 627 31.6
PGSC0003DMG400020383 Solanum tuberosum HOM05D007315 ORTHO05D008940 3.5e-39 167.5 676 30.8
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 4.5e-39 167.2 650 29.7
Hma1.2p1_1085F.1_g255400 Hydrangea macrophylla HOM05D007315 ORTHO05D008940 1.0e-38 166.0 465 33.1
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 3.8e-38 164.1 658 30.1
Thhalv10001359m.g Eutrema salsugineum HOM05D007315 ORTHO05D008940 1.1e-37 162.5 659 29.9
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 1.1e-37 162.5 628 30.6
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 2.5e-37 161.4 479 34.4
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 4.2e-37 160.6 660 29.5
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 5.5e-37 160.2 632 28.5
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 7.2e-37 159.8 571 31.7
ECA238G3268 Erigeron canadensis HOM05D007315 ORTHO05D008940 7.2e-37 159.8 504 31.2
AL4G42870 Arabidopsis lyrata HOM05D007315 ORTHO05D008940 9.4e-37 159.5 639 30.2
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 1.0e-35 156.0 544 29.6
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 1.0e-30 139.4 711 28.4
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 6.5e-30 136.7 648 27.6
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 8.6e-30 136.3 483 29.4
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 3.2e-29 134.4 286 35.3
A05p04140 Brassica napus HOM05D007315 ORTHO05D008940 8.0e-28 129.8 494 29.8
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 1.0e-27 129.4 482 28.4
MSTRG.24547 Avicennia marina HOM05D007315 ORTHO05D008940 1.8e-27 128.6 694 26.5
Migut.N03024 Erythranthe guttata HOM05D007315 ORTHO05D008940 4.0e-27 127.5 614 28.0
SalBow3G0669 Salvia bowleyana HOM05D007315 ORTHO05D008940 5.7e-26 123.6 475 31.4
BraA05t19400Z Brassica rapa HOM05D007315 ORTHO05D008940 3.1e-24 117.9 435 28.7
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 3.5e-23 114.4 467 28.7
BolC4t22121H Brassica oleracea HOM05D007315 ORTHO05D008940 7.8e-23 113.2 433 30.3
C04p04910 Brassica napus HOM05D007315 ORTHO05D008940 1.0e-22 112.8 433 30.7
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 5.2e-19 100.5 513 26.3
Zm00001eb434100 Zea mays HOM05D019859 ORTHO05D008940 9.8e-18 96.3 509 27.5
SGA_v2.0_scaffold19G08894 Striga asiatica HOM05D007315 ORTHO05D008940 4.9e-17 94.0 672 24.4
BcaC02g12347 Brassica carinata HOM05D007315 ORTHO05D008940 5.9e-15 87.0 357 28.9
Os11g0247500 Oryza sativa ssp. japonica HOM05D019859 ORTHO05D008940 7.8e-15 86.7 585 25.0
SGA_v2.0_scaffold25G11016 Striga asiatica HOM05D007315 ORTHO05D008940 3.9e-14 84.3 661 25.3
Zm00001eb136730 Zea mays HOM05D019859 ORTHO05D008940 2.1e-12 78.6 402 27.9
unitig_578.g16246 Utricularia gibba HOM05D007315 ORTHO05D008940 6.4e-09 67.0 140 36.4
ATR0743G232 Amborella trichopoda HOM05D007315 ORTHO05D008940 1.1e-08 66.2 99 42.4
Duzib093G0367 Durio zibethinus HOM05D007315 ORTHO05D008940 2.4e-08 65.1 281 28.5
Actinidia39246 Actinidia chinensis HOM05D007315 ORTHO05D008940 1.3e-06 59.3 308 24.0


User provided reference genes

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