Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G121090 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 7.0e-120 434.1 242 100.0
Glyma.13G006500 Glycine max HOM05D005849 ORTHO05D004704 1.9e-61 240.0 275 60.0
VMungo0540G2501 Vigna mungo HOM05D005849 ORTHO05D004704 4.2e-56 222.2 240 65.8
Glyma.20G062100 Glycine max HOM05D005849 ORTHO05D004704 2.5e-53 213.0 271 59.4
TPR.G11064 Trifolium pratense HOM05D005849 ORTHO05D004704 4.0e-30 136.0 249 42.2
Medtr5g098480 Medicago truncatula HOM05D005849 ORTHO05D004704 7.0e-27 125.2 246 43.9
CiPaw.04G197000 Carya illinoinensis HOM05D005849 ORTHO05D004704 2.0e-26 123.6 251 38.2
QL04p068477 Quercus lobata HOM05D005849 ORTHO05D004704 1.7e-25 120.6 244 42.2
Psat5g104280 Pisum sativum HOM05D005849 ORTHO05D004704 3.8e-25 119.4 253 39.9
LjContig00081g0015024 Lotus japonicus HOM05D005849 ORTHO05D004704 6.5e-25 118.6 251 44.6
Lalb_Chr10g0107651 Lupinus albus HOM05D005849 ORTHO05D004704 4.2e-24 115.9 271 42.1
Prupe.3G197400 Prunus persica HOM05D005849 ORTHO05D004704 3.0e-22 109.8 264 38.3
Thecc.01G196200 Theobroma cacao HOM05D005849 ORTHO05D004704 4.0e-22 109.4 109 58.7
Dinv26604 Davidia involucrata HOM05D005849 ORTHO05D004704 6.8e-22 108.6 248 39.1
FvH4_6g40610 Fragaria vesca HOM05D005849 ORTHO05D004704 1.7e-20 104.0 105 56.2
FAN14G3262 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.7e-20 104.0 105 56.2
Cc03_g07410 Coffea canephora HOM05D005849 ORTHO05D004704 1.4e-19 100.9 133 49.6
Duzib133G0645 Durio zibethinus HOM05D005849 ORTHO05D004704 1.4e-19 100.9 254 37.8
RcHm_v2.0_Chr2g0155981 Rosa chinensis HOM05D005849 ORTHO05D004704 2.4e-19 100.1 234 39.7
FAN09G2506 Fragaria x ananassa HOM05D005849 ORTHO05D004704 5.4e-19 99.0 235 37.0
COL.COLO4_19617 Corchorus olitorius HOM05D005849 ORTHO05D004704 1.2e-18 97.8 270 35.9
MD17G1117100 Malus domestica HOM05D005849 ORTHO05D004704 2.0e-18 97.1 131 51.1
MD09G1126800 Malus domestica HOM05D005849 ORTHO05D004704 3.5e-18 96.3 229 39.7
FAN05G2424 Fragaria x ananassa HOM05D005849 ORTHO05D004704 5.9e-18 95.5 239 36.0
TPR.G35904 Trifolium pratense HOM05D005849 ORTHO05D004704 5.9e-18 95.5 262 36.3
Manes.12G064702 Manihot esculenta HOM05D005849 ORTHO05D004704 7.7e-18 95.1 109 53.2
TAR629G2787 Trochodendron aralioides HOM05D005849 ORTHO05D004704 1.0e-17 94.7 106 53.8
FAN02G2959 Fragaria x ananassa HOM05D005849 ORTHO05D004704 2.9e-17 93.2 237 35.0
Duzib138G1177 Durio zibethinus HOM05D005849 ORTHO05D004704 6.5e-17 92.0 260 35.4
Lj8P136T22 Lonicera japonica HOM05D005849 ORTHO05D004704 8.5e-17 91.7 245 38.4
Sabra14G0127500 Salix brachista HOM05D005849 ORTHO05D004704 8.5e-17 91.7 236 37.7
Gorai.001G191400 Gossypium raimondii HOM05D005849 ORTHO05D004704 1.1e-16 91.3 238 37.8
PGR083G2364 Punica granatum HOM05D005849 ORTHO05D004704 1.1e-16 91.3 239 36.0
Ciclev10018021m.g Citrus clementina HOM05D005849 ORTHO05D004704 1.5e-16 90.9 135 48.1
Gohir.A07G169800 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.9e-16 90.5 240 37.5
TWI18G0644 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 1.9e-16 90.5 119 51.3
Cfa014225 Carpinus fangiana HOM05D005849 ORTHO05D004704 5.5e-16 89.0 241 38.2
Haze_12628 Corylus avellana HOM05D005849 ORTHO05D004704 7.2e-16 88.6 227 39.2
Nn1g03187 Nelumbo nucifera HOM05D005849 ORTHO05D004704 7.2e-16 88.6 183 39.3
Potri.014G167700 Populus trichocarpa HOM05D005849 ORTHO05D004704 7.2e-16 88.6 279 34.8
ECA240G3450 Erigeron canadensis HOM05D005849 ORTHO05D004704 4.7e-15 85.9 99 50.5
Gorai.001G222200 Gossypium raimondii HOM05D005849 ORTHO05D004704 4.7e-15 85.9 248 38.7
Gohir.A07G192100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 8.0e-15 85.1 249 39.0
CiPaw.03G281900 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.4e-14 84.3 251 36.7
Gohir.D07G198400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.8e-14 84.0 248 38.3
EL10Ac9g22679 Beta vulgaris HOM05D005849 ORTHO05D004704 2.3e-14 83.6 165 37.0
MBI19_g14891_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 2.3e-14 83.6 118 45.8
TWI36G1699 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 2.3e-14 83.6 243 34.2
Cpa.g.sc136.30 Carica papaya HOM05D005849 ORTHO05D004704 4.0e-14 82.8 254 35.4
Gohir.D07G171100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 4.0e-14 82.8 239 36.8
arahy.Tifrunner.gnm1.ann1.S46AGL Arachis hypogaea HOM05D005849 ORTHO05D004704 5.2e-14 82.4 248 39.5
Actinidia18832 Actinidia chinensis HOM05D005849 ORTHO05D004704 6.8e-14 82.0 110 49.1
Lsat_1_v5_gn_9_103781 Lactuca sativa HOM05D005849 ORTHO05D004704 8.8e-14 81.6 175 34.9
AUR62029117 Chenopodium quinoa HOM05D005849 ORTHO05D004704 1.5e-13 80.9 155 40.0
Aqoxy4G02338 Aquilegia oxysepala HOM05D005849 ORTHO05D004704 2.0e-13 80.5 255 33.7
Solyc07g045450.1 Solanum lycopersicum HOM05D005849 ORTHO05D004704 2.6e-13 80.1 107 45.8
Sopen07g023990 Solanum pennellii HOM05D005849 ORTHO05D004704 2.6e-13 80.1 107 45.8
AUR62015005 Chenopodium quinoa HOM05D005849 ORTHO05D004704 3.4e-13 79.7 247 33.6
Medtr3g082780 Medicago truncatula HOM05D005849 ORTHO05D004704 3.4e-13 79.7 98 56.1
Nn1g07503 Nelumbo nucifera HOM05D005849 ORTHO05D004704 5.7e-13 79.0 171 36.3
Dinv21298 Davidia involucrata HOM05D005849 ORTHO05D004704 7.5e-13 78.6 229 37.6
Manes.13G061900 Manihot esculenta HOM05D005849 ORTHO05D004704 9.8e-13 78.2 253 33.6
TAR629G2911 Trochodendron aralioides HOM05D005849 ORTHO05D004704 9.8e-13 78.2 236 36.9
THA.LOC104808845 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 2.2e-12 77.0 103 46.6
DCAR_012893 Daucus carota HOM05D005849 ORTHO05D004704 2.8e-12 76.6 156 42.9
MBI16_g22138_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 4.9e-12 75.9 97 48.5
CsaV3_6G009640 Cucumis sativus L. HOM05D005849 ORTHO05D004704 6.3e-12 75.5 136 45.6
Actinidia35203 Actinidia chinensis HOM05D005849 ORTHO05D004704 1.4e-11 74.3 231 34.2
DCAR_019680 Daucus carota HOM05D005849 ORTHO05D004704 1.4e-11 74.3 244 34.0
PSO675G3647 Papaver somniferum HOM05D005849 ORTHO05D004704 1.8e-11 73.9 256 32.4
Thhalv10002998m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 2.4e-11 73.6 150 38.0
MELO3C025957.2 Cucumis melo HOM05D005849 ORTHO05D004704 3.1e-11 73.2 136 47.1
Sp3g23270 Schrenkiella parvula HOM05D009495 ORTHO05D004704 3.1e-11 73.2 110 44.5
BcaC06g35871 Brassica carinata HOM05D009495 ORTHO05D004704 7.0e-11 72.0 98 44.9
C07p10220 Brassica napus HOM05D009495 ORTHO05D004704 7.0e-11 72.0 98 44.9
BolC7t41473H Brassica oleracea HOM05D009495 ORTHO05D004704 7.0e-11 72.0 98 44.9
PSO541G2883 Papaver somniferum HOM05D005849 ORTHO05D004704 7.0e-11 72.0 255 31.8
AT5G35870 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 1.6e-10 70.9 116 39.7
A07p06700 Brassica napus HOM05D009495 ORTHO05D004704 1.6e-10 70.9 98 43.9
BraA07t28463Z Brassica rapa HOM05D009495 ORTHO05D004704 1.6e-10 70.9 98 43.9
Sp7g06260 Schrenkiella parvula HOM05D009495 ORTHO05D004704 1.6e-10 70.9 111 41.4
Duzib213G0789 Durio zibethinus HOM05D005849 ORTHO05D004704 2.0e-10 70.5 110 45.5
Carub.0007s3167 Capsella rubella HOM05D009495 ORTHO05D004704 2.7e-10 70.1 119 42.0
Peaxi162Scf00802g00130 Petunia axillaris HOM05D005849 ORTHO05D004704 2.7e-10 70.1 92 50.0
AL7G44750 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 4.5e-10 69.3 110 40.0
Nitab4.5_0000006g0660 Nicotiana tabacum HOM05D005849 ORTHO05D004704 4.5e-10 69.3 239 33.5
Ca_06483_v3 Cicer arietinum L. HOM05D005849 ORTHO05D004704 5.9e-10 68.9 191 35.1
Sed0012118 Sechium edule HOM05D005849 ORTHO05D004704 5.9e-10 68.9 221 38.9
AL3G42130 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 1.0e-09 68.2 107 45.8
Thhalv10005712m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 1.0e-09 68.2 105 41.0
AT2G04480 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 1.3e-09 67.8 109 42.2
Ah.01g002540 Amaranthus hybridus HOM05D005849 ORTHO05D004704 1.7e-09 67.4 135 37.0
Carub.0003s2613 Capsella rubella HOM05D009495 ORTHO05D004704 1.7e-09 67.4 108 40.7
Sc20g0004000 Simmondsia chinensis HOM05D005849 ORTHO05D004704 2.3e-09 67.0 242 35.5
CARHR102390 Cardamine hirsuta HOM05D009495 ORTHO05D004704 2.9e-09 66.6 108 41.7
BcaB02g08048 Brassica carinata HOM05D009495 ORTHO05D004704 3.8e-09 66.2 106 43.4
BcaB06g26787 Brassica carinata HOM05D009495 ORTHO05D004704 3.8e-09 66.2 96 42.7
Rhsim06G0176600 Rhododendron simsii HOM05D005849 ORTHO05D004704 5.0e-09 65.9 217 35.5
Sed0027972 Sechium edule HOM05D005849 ORTHO05D004704 5.0e-09 65.9 205 35.6
CiPaw.11G203200 Carya illinoinensis HOM05D005849 ORTHO05D004704 8.6e-09 65.1 104 46.2
Oeu064351.1 Olea europaea HOM05D005849 ORTHO05D004704 8.6e-09 65.1 114 40.4
Sabra16G0240400 Salix brachista HOM05D005849 ORTHO05D004704 1.1e-08 64.7 241 29.5
BcaC04g21895 Brassica carinata HOM05D009495 ORTHO05D004704 1.9e-08 63.9 105 40.0
A04p10030 Brassica napus HOM05D009495 ORTHO05D004704 1.9e-08 63.9 109 37.6
C09p26070 Brassica napus HOM05D009495 ORTHO05D004704 1.9e-08 63.9 105 40.0
BolC9t55510H Brassica oleracea HOM05D009495 ORTHO05D004704 1.9e-08 63.9 105 40.0
BraA04t16665Z Brassica rapa HOM05D009495 ORTHO05D004704 1.9e-08 63.9 109 37.6
THA.LOC104815364 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 2.5e-08 63.5 94 43.6
arahy.Tifrunner.gnm1.ann1.8Y07GA Arachis hypogaea HOM05D005849 ORTHO05D004704 4.3e-08 62.8 241 36.5
A09p20650 Brassica napus HOM05D009495 ORTHO05D004704 4.3e-08 62.8 105 39.0
BraA09t37669Z Brassica rapa HOM05D009495 ORTHO05D004704 4.3e-08 62.8 105 39.0
ClCG02G009210 Citrullus lanatus HOM05D005849 ORTHO05D004704 4.3e-08 62.8 136 39.0
Prupe.4G242400 Prunus persica HOM05D005849 ORTHO05D004704 1.6e-07 60.8 104 43.3
CARHR216740 Cardamine hirsuta HOM05D009495 ORTHO05D004704 4.7e-07 59.3 105 38.1
Os12g0498900 Oryza sativa ssp. japonica HOM05D005849 ORTHO05D004704 4.7e-07 59.3 120 35.0
Actinidia07866 Actinidia chinensis HOM05D005849 ORTHO05D004704 6.1e-07 58.9 207 32.4
Gohir.D01G076400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 6.1e-07 58.9 126 38.1
Nn1g04368 Nelumbo nucifera HOM05D005849 ORTHO05D004704 6.1e-07 58.9 92 43.5
Thecc.07G014700 Theobroma cacao HOM05D005849 ORTHO05D004704 6.1e-07 58.9 116 38.8
ATR0827G126 Amborella trichopoda HOM05D005849 ORTHO05D004704 1.4e-06 57.8 105 40.0
Lj1P796T11 Lonicera japonica HOM05D005849 ORTHO05D004704 1.4e-06 57.8 99 46.5
Psat2g002880 Pisum sativum HOM05D005849 ORTHO05D004704 1.4e-06 57.8 255 32.2
BcaC02g09504 Brassica carinata HOM05D009495 ORTHO05D004704 2.3e-06 57.0 105 36.2
C04p43510 Brassica napus HOM05D009495 ORTHO05D004704 2.3e-06 57.0 105 36.2
Aa31sc203G20 Aethionema arabicum HOM05D009495 ORTHO05D004704 3.0e-06 56.6 104 38.5
Cpa.g.sc12.153 Carica papaya HOM05D005849 ORTHO05D004704 3.0e-06 56.6 94 45.7
Ciclev10009298m.g Citrus clementina HOM05D005849 ORTHO05D004704 3.0e-06 56.6 243 31.3
QL08p004345 Quercus lobata HOM05D005849 ORTHO05D004704 3.0e-06 56.6 100 41.0
QL11p054311 Quercus lobata HOM05D005849 ORTHO05D004704 3.0e-06 56.6 100 41.0
Atru.chr2.3682 Acer truncatum HOM05D005849 ORTHO05D004704 4.0e-06 56.2 89 46.1
MSTRG.12249 Avicennia marina HOM05D005849 ORTHO05D004704 5.2e-06 55.8 249 28.9
Eucgr.H00876 Eucalyptus grandis HOM05D005849 ORTHO05D004704 5.2e-06 55.8 95 40.0
Phvul.006G056700 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 5.2e-06 55.8 91 46.2
arahy.Tifrunner.gnm1.ann1.UTL0P7 Arachis hypogaea HOM05D005849 ORTHO05D004704 6.8e-06 55.5 89 40.4
arahy.Tifrunner.gnm1.ann1.715EVP Arachis hypogaea HOM05D005849 ORTHO05D004704 8.9e-06 55.1 89 40.4
Lj8P178T38 Lonicera japonica HOM05D005849 ORTHO05D004704 8.9e-06 55.1 105 42.9


User provided reference genes

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