Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.0e-104 380.6 185 100.0
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.8e-68 261.5 146 91.8
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.9e-67 257.7 146 90.4
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.9e-67 257.7 146 90.4
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.9e-67 257.7 146 89.7
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 1.0e-62 243.8 146 86.3
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.7e-62 240.7 153 83.7
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 2.8e-60 235.7 146 80.8
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 2.7e-55 219.2 147 76.9
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 1.0e-54 217.2 147 76.2
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 3.9e-54 215.3 147 74.1
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 4.8e-52 208.4 132 81.8
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 1.4e-51 206.8 147 71.4
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 3.1e-51 205.7 130 78.5
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 2.2e-49 199.5 132 75.0
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 4.6e-47 191.8 147 70.1
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 3.6e-39 165.6 147 61.2
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 1.1e-37 160.6 147 57.8
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 2.6e-37 159.5 147 59.9
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 7.4e-37 157.9 147 58.5
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 9.7e-37 157.5 131 64.1
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 2.2e-36 156.4 147 58.5
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 2.2e-36 156.4 146 55.5
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 2.8e-36 156.0 147 55.8
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 1.1e-35 154.1 147 56.5
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 1.1e-35 154.1 135 62.2
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 2.4e-35 152.9 146 56.2
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 5.3e-35 151.8 147 53.7
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 6.9e-35 151.4 144 58.3
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 3.4e-34 149.1 147 53.1
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.5e-34 148.7 147 52.4
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 5.9e-34 148.3 147 52.4
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.9e-34 148.3 147 52.4
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 5.9e-34 148.3 147 53.7
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.0e-33 147.5 147 57.8
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 1.3e-33 147.1 147 55.1
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 1.7e-33 146.7 147 50.3
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.2e-33 146.4 139 58.3
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 2.2e-33 146.4 147 53.1
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.9e-33 146.0 147 56.5
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 6.5e-33 144.8 147 55.8
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 6.5e-33 144.8 147 51.7
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.4e-32 143.7 147 54.4
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 1.9e-32 143.3 138 55.1
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 3.2e-32 142.5 146 54.1
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 7.2e-32 141.4 147 53.7
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 2.1e-31 139.8 147 50.3
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 2.1e-31 139.8 147 50.3
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 4.7e-31 138.7 147 51.0
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 4.7e-31 138.7 147 51.7
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 1.0e-30 137.5 147 53.1
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 1.0e-30 137.5 147 51.0
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 5.2e-30 135.2 143 49.0
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 6.7e-30 134.8 148 50.0
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 8.8e-30 134.4 132 55.3
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 1.1e-29 134.0 145 47.6
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 2.0e-29 133.3 138 51.4
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 2.0e-29 133.3 140 52.1
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 2.6e-29 132.9 145 46.9
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 5.7e-29 131.7 151 49.0
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 5.7e-29 131.7 145 46.9
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 2.2e-28 129.8 138 50.0
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 1.4e-27 127.1 136 52.2
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 1.4e-27 127.1 147 47.6
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 1.8e-27 126.7 150 48.7
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 2.4e-27 126.3 145 44.8
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 4.1e-27 125.6 145 46.2
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 7.0e-27 124.8 145 44.1
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 1.6e-26 123.6 147 46.9
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 1.6e-26 123.6 146 46.6
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 1.6e-26 123.6 147 46.9
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 2.6e-26 122.9 146 47.3
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 3.5e-26 122.5 147 46.9
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 3.5e-26 122.5 147 45.6
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 3.5e-26 122.5 147 49.0
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 7.7e-26 121.3 146 46.6
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 1.3e-25 120.6 147 46.3
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 2.9e-25 119.4 146 44.5
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 3.8e-25 119.0 147 46.3
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 3.8e-25 119.0 138 49.3
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 8.5e-25 117.9 146 45.2
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 8.5e-25 117.9 146 45.2
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 1.9e-24 116.7 98 57.1
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 4.2e-24 115.5 147 42.9
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 5.5e-24 115.2 140 45.0
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 2.1e-23 113.2 110 52.7
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 2.1e-23 113.2 146 42.5
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 2.1e-23 113.2 146 42.5
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 2.1e-23 113.2 146 42.5
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 3.6e-23 112.5 143 44.8
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 1.8e-22 110.2 134 43.3
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 1.2e-21 107.5 135 47.4
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.2e-21 107.5 146 42.5
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 2.0e-21 106.7 147 45.6
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 3.3e-21 105.9 99 53.5
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 1.7e-20 103.6 131 44.3
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 6.3e-20 101.7 103 53.4
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 1.4e-19 100.5 130 46.2
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 2.7e-18 96.3 147 39.5
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.3e-17 94.0 135 40.7


User provided reference genes

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