Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1694.1 848 100.0
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1577.8 848 92.8
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1530.0 851 90.5
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1474.9 865 87.4
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1409.8 853 82.5
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1367.1 854 80.6
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1354.0 848 80.5
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1349.7 855 79.5
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1341.3 857 78.9
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1337.0 850 79.6
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1302.0 935 73.2
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1273.1 851 74.4
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1270.0 854 74.1
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1263.8 848 74.8
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1254.6 856 73.5
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1253.8 856 73.5
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1253.0 856 73.6
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1248.8 862 73.4
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1247.6 849 72.6
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1247.3 864 72.7
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1244.6 856 72.8
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1240.3 859 73.6
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1238.8 884 71.2
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1236.9 851 72.4
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1232.2 856 72.8
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1229.5 864 72.3
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1221.8 864 72.2
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1219.9 851 72.4
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1218.4 856 72.2
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1206.8 861 69.9
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1204.5 850 71.6
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1204.1 819 74.2
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1200.3 856 71.0
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1199.5 870 70.5
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1196.0 851 71.1
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1195.3 859 70.9
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1192.2 851 71.2
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1191.8 851 71.2
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1191.4 863 70.8
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1189.9 866 69.6
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1187.6 849 70.1
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1186.0 860 69.3
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1186.0 854 70.4
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1175.6 853 70.3
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1175.2 856 69.4
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1175.2 849 70.6
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1173.3 849 70.8
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1169.8 833 70.5
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1168.7 836 69.3
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1166.8 857 68.0
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1159.8 858 68.5
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1157.5 862 68.0
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1155.2 867 68.3
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1149.8 831 69.3
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1149.0 850 68.0
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1147.1 852 68.9
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1145.6 885 67.9
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1145.6 861 68.1
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1144.4 855 69.0
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1144.0 964 63.1
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1143.3 769 75.0
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1142.5 852 68.0
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1142.1 856 67.9
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1142.1 747 76.2
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1141.3 852 67.7
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1140.9 853 67.3
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1139.4 855 67.6
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1136.7 843 68.1
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1135.2 859 67.5
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1134.4 857 68.1
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1129.8 772 74.5
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1122.1 842 67.1
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1118.6 839 68.3
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1117.8 854 66.3
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1108.2 861 66.8
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1107.4 916 62.8
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1106.3 928 63.4
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1102.4 857 65.8
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1102.4 857 65.8
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1095.9 852 65.4
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1090.5 870 66.0
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1087.8 764 71.7
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1085.5 942 61.1
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 0.0e+00 1082.8 1011 59.1
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1081.2 836 65.7
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1080.9 731 73.9
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1079.7 852 64.8
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 0.0e+00 1078.5 848 65.2
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1076.2 842 65.3
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1075.8 842 64.5
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 5.2e-311 1070.8 854 64.4
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 3.4e-310 1068.1 855 64.3
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 3.4e-310 1068.1 855 64.3
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 4.4e-310 1067.8 830 65.7
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 1.1e-308 1063.1 860 64.2
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.3e-306 1056.2 853 63.4
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 3.3e-305 1051.6 853 63.3
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 3.3e-305 1051.6 853 63.4
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 2.0e-302 1042.3 844 63.5
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.4e-302 1041.6 885 62.1
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 2.9e-301 1038.5 704 74.6
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 1.9e-297 1025.8 832 63.5
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 1.2e-294 1016.5 739 69.4
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 4.9e-293 1011.1 851 60.4
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 6.0e-291 1004.2 770 65.5
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 9.5e-281 970.3 719 68.2
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 1.9e-276 956.1 843 59.7
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.6e-275 953.0 790 61.4
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.3e-274 949.9 836 60.2
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.1e-272 942.6 835 60.0
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 1.2e-270 936.8 718 66.4
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 8.1e-264 914.1 605 74.5
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 4.3e-257 891.7 742 62.9
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 1.0e-245 854.0 665 66.0
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 1.1e-244 850.5 534 78.5
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 1.4e-244 850.1 543 79.9
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 9.7e-233 810.8 851 52.8
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.1e-225 787.3 774 57.6
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 1.0e-221 774.2 854 50.5
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 4.1e-207 725.7 870 47.0
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 4.4e-201 705.7 866 48.0
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 2.2e-200 703.4 855 47.8
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 8.3e-200 701.4 465 74.8
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 3.7e-176 622.9 460 69.3
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.9e-164 583.9 756 47.2
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 1.2e-163 581.3 537 59.4
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 2.9e-160 570.1 391 72.4
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.0e-157 561.6 457 63.5
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 5.1e-157 559.3 468 63.2
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 3.1e-154 550.1 814 41.8
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.2e-151 540.0 392 69.9
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.2e-150 538.1 473 59.2
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 2.1e-150 537.3 493 60.0
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 6.4e-144 515.8 451 61.2
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 1.6e-142 511.1 313 81.2
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 4.0e-138 496.5 314 78.7
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 5.8e-129 466.1 460 56.5
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 3.2e-127 460.3 296 74.3
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 9.6e-124 448.7 381 60.4
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 4.2e-119 433.3 367 63.8
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 3.3e-116 423.7 353 64.3
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 2.7e-102 377.5 315 61.6
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 8.0e-86 322.8 288 56.6
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 5.0e-80 303.5 201 75.6
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 3.5e-73 280.8 180 75.0
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 4.3e-71 273.9 250 58.8
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 5.4e-66 256.9 185 65.4
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 1.6e-62 245.4 158 77.2
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 6.2e-62 243.4 211 59.7
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 2.3e-56 224.9 129 84.5
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 3.1e-45 188.0 606 29.0
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 8.9e-45 186.4 267 44.6
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 3.4e-44 184.5 158 61.4
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 1.0e-32 146.4 112 67.9
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 1.1e-31 142.9 115 64.3
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 5.8e-28 130.6 72 87.5
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 7.6e-28 130.2 128 58.6
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.1e-21 109.8 108 53.7
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 9.0e-21 106.7 77 71.4
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 1.5e-20 105.9 71 74.6
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.2e-17 96.3 86 57.0
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 2.3e-16 92.0 60 75.0
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 7.4e-15 87.0 92 51.1
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 6.5e-11 73.9 75 53.3
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 1.2e-09 69.7 47 70.2
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 8.7e-08 63.5 35 80.0
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 8.7e-08 63.5 35 80.0
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 8.7e-08 63.5 35 80.0
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 8.7e-08 63.5 49 67.3


User provided reference genes

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