Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 7.7e-58 226.9 110 100.0
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 3.4e-45 184.9 111 82.9
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 8.3e-44 180.3 110 80.9
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 2.7e-42 175.3 112 79.5
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 6.6e-33 144.1 112 67.9
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 5.8e-29 131.0 111 67.6
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 2.9e-28 128.6 111 64.0
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 1.4e-27 126.3 110 63.6
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 1.5e-24 116.3 117 53.8
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.6e-23 112.8 114 56.1
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 3.6e-23 111.7 127 52.8
Lj5g0018872 Lotus japonicus HOM05D005816 ORTHO05D006915 6.2e-23 110.9 102 62.7
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 1.4e-22 109.8 113 54.0
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 5.2e-22 107.8 113 54.0
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.5e-21 106.3 119 50.4
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 2.6e-21 105.5 119 51.3
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 4.4e-21 104.8 114 55.3
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 3.8e-20 101.7 114 57.0
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 8.4e-20 100.5 113 51.3
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 1.1e-19 100.1 115 50.4
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 9.2e-19 97.1 125 47.2
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 1.6e-18 96.3 111 48.6
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 1.6e-18 96.3 116 46.6
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 2.1e-18 95.9 119 50.4
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 2.1e-18 95.9 113 48.7
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 3.5e-18 95.1 113 45.1
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 3.5e-18 95.1 112 50.0
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 4.6e-18 94.7 128 50.0
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 4.6e-18 94.7 105 52.4
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 7.8e-18 94.0 111 46.8
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 7.8e-18 94.0 122 45.9
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.0e-17 93.6 112 50.0
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 1.3e-17 93.2 110 48.2
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 5.1e-17 91.3 112 49.1
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 8.7e-17 90.5 110 49.1
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 8.7e-17 90.5 112 50.9
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.1e-16 90.1 113 49.6
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.5e-16 89.7 118 47.5
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 1.5e-16 89.7 110 43.6
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 1.9e-16 89.4 118 43.2
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 3.3e-16 88.6 113 47.8
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 1.2e-15 86.7 112 48.2
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 1.6e-15 86.3 123 43.9
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.6e-15 86.3 123 43.9
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 4.7e-15 84.7 119 46.2
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 4.7e-15 84.7 118 50.8
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.4e-14 83.2 123 44.7
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.4e-14 83.2 123 43.1
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 1.8e-14 82.8 101 51.5
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.4e-14 82.4 120 47.5
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 3.1e-14 82.0 112 46.4
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 5.2e-14 81.3 110 47.3
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 5.2e-14 81.3 118 46.6
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 5.2e-14 81.3 121 42.1
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 6.9e-14 80.9 107 44.9
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 6.9e-14 80.9 116 44.8
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 6.9e-14 80.9 127 41.7
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 9.0e-14 80.5 120 47.5
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 2.0e-13 79.3 115 42.6
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 2.0e-13 79.3 122 41.0
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 2.6e-13 79.0 70 58.6
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 2.6e-13 79.0 114 48.2
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 3.4e-13 78.6 113 44.2
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 4.4e-13 78.2 105 47.6
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 5.8e-13 77.8 118 45.8
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 5.8e-13 77.8 116 44.0
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 5.8e-13 77.8 116 44.0
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 5.8e-13 77.8 118 45.8
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 7.6e-13 77.4 110 45.5
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 9.9e-13 77.0 118 40.7
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.7e-12 76.3 112 43.8
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 2.2e-12 75.9 109 42.2
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 2.2e-12 75.9 112 40.2
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 3.8e-12 75.1 115 41.7
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 4.9e-12 74.7 122 41.8
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.4e-12 74.3 120 46.7
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.4e-11 73.2 117 43.6
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.9e-11 72.8 123 40.7
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 1.9e-11 72.8 121 36.4
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 1.9e-11 72.8 113 45.1
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.4e-11 72.4 111 40.5
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 3.2e-11 72.0 120 40.8
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 4.2e-11 71.6 59 61.0
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 4.2e-11 71.6 58 62.1
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 9.3e-11 70.5 117 40.2
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.2e-10 70.1 114 42.1
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.2e-10 70.1 101 44.6
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 1.2e-10 70.1 111 45.0
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 1.6e-10 69.7 103 42.7
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.6e-10 69.7 123 39.8
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 2.1e-10 69.3 67 55.2
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 2.7e-10 68.9 109 43.1
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 2.7e-10 68.9 109 45.9
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 2.7e-10 68.9 109 43.1
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 3.5e-10 68.6 58 60.3
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 4.6e-10 68.2 120 39.2
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 7.8e-10 67.4 108 41.7
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 7.8e-10 67.4 58 53.4
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.3e-09 66.6 110 45.5
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 1.3e-09 66.6 123 39.8
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.3e-09 65.9 101 43.6
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 2.3e-09 65.9 110 37.3
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 3.0e-09 65.5 111 38.7
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 3.0e-09 65.5 118 36.4
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 3.9e-09 65.1 69 52.2
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 5.1e-09 64.7 108 44.4
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 5.1e-09 64.7 57 54.4
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 5.1e-09 64.7 113 36.3
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.1e-08 63.5 57 56.1
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 1.1e-08 63.5 124 35.5
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 1.5e-08 63.2 115 38.3
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.5e-08 63.2 116 39.7
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.9e-08 62.8 113 41.6
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.9e-08 62.8 113 36.3
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 1.9e-08 62.8 73 49.3
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 1.9e-08 62.8 118 38.1
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 2.5e-08 62.4 57 52.6
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 2.5e-08 62.4 114 36.8
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 3.3e-08 62.0 98 42.9
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 7.3e-08 60.8 91 41.8
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 7.3e-08 60.8 110 42.7
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 7.3e-08 60.8 109 41.3
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 7.3e-08 60.8 117 39.3
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 9.6e-08 60.5 113 38.9
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 9.6e-08 60.5 70 47.1
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 2.1e-07 59.3 109 38.5
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 2.1e-07 59.3 113 38.9
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 4.8e-07 58.2 114 36.8
Nn4g23363 Nelumbo nucifera HOM05D007541 ORTHO05D009404 8.1e-07 57.4 70 47.1
CANSAT64G1761 Cannabis sativa HOM05D005816 ORTHO05D006915 1.4e-06 56.6 172 31.4
RcHm_v2.0_Chr4g0438701 Rosa chinensis HOM05D007541 ORTHO05D009404 2.4e-06 55.8 29 82.8


User provided reference genes

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