Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 9.8e-95 350.1 178 100.0
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 2.9e-86 322.0 178 91.0
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 1.2e-79 300.1 178 83.7
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 1.5e-79 299.7 178 84.8
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 3.4e-79 298.5 179 85.5
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 5.8e-79 297.7 178 83.7
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 7.1e-77 290.8 178 82.0
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 9.5e-74 280.4 171 81.9
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 2.1e-73 279.3 179 81.6
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 1.1e-72 276.9 169 84.0
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 2.3e-72 275.8 178 79.8
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 3.1e-72 275.4 179 78.2
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 5.2e-72 274.6 179 79.9
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 8.9e-72 273.9 171 82.5
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 2.0e-71 272.7 176 79.5
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 5.8e-71 271.2 179 78.8
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 9.9e-71 270.4 179 78.2
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 1.7e-70 269.6 178 78.7
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 2.9e-70 268.9 170 78.2
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 4.9e-70 268.1 178 78.7
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 6.4e-70 267.7 179 78.8
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 77.7
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 78.8
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.1e-69 266.9 179 77.7
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 1.1e-69 266.9 178 78.1
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.4e-69 266.5 180 77.8
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.9e-69 266.2 170 81.2
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 4.1e-69 265.0 179 77.7
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 7.1e-69 264.2 170 77.1
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 7.1e-69 264.2 178 77.5
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 7.1e-69 264.2 178 77.0
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 77.7
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 77.7
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 9.2e-69 263.8 179 77.1
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.2e-68 263.5 180 77.8
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 1.6e-68 263.1 179 78.8
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 2.7e-68 262.3 178 74.7
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 3.5e-68 261.9 178 74.7
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 6.0e-68 261.2 178 75.8
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 6.0e-68 261.2 179 76.5
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 1.3e-67 260.0 178 76.4
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 1.3e-67 260.0 179 73.2
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.3e-67 260.0 170 80.6
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 1.7e-67 259.6 171 79.5
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 2.3e-67 259.2 179 75.4
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.3e-67 259.2 179 76.5
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 3.0e-67 258.8 179 75.4
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 3.0e-67 258.8 179 76.0
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 3.9e-67 258.5 179 74.9
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 3.9e-67 258.5 179 76.0
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 5.1e-67 258.1 179 76.0
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 6.6e-67 257.7 179 74.9
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 6.6e-67 257.7 177 75.7
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 8.6e-67 257.3 179 74.9
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 8.6e-67 257.3 179 76.0
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 8.6e-67 257.3 179 75.4
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.1e-66 256.9 179 76.0
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.1e-66 256.9 179 76.0
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.5e-66 256.5 179 73.2
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 1.9e-66 256.1 173 77.5
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 1.9e-66 256.1 176 75.0
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 1.9e-66 256.1 176 75.6
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.9e-66 256.1 171 76.6
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 3.3e-66 255.4 179 75.4
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 3.3e-66 255.4 168 76.2
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 3.3e-66 255.4 171 76.6
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 4.3e-66 255.0 179 73.2
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.3e-66 255.0 179 74.9
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 4.3e-66 255.0 179 76.0
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 5.6e-66 254.6 179 75.4
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 5.6e-66 254.6 177 74.0
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 7.3e-66 254.2 179 74.9
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 7.3e-66 254.2 179 76.0
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 9.6e-66 253.8 179 74.9
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 9.6e-66 253.8 171 77.8
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 9.6e-66 253.8 179 74.9
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.2e-65 253.4 178 75.8
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.2e-65 253.4 179 75.4
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 1.2e-65 253.4 176 76.1
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 2.1e-65 252.7 179 74.3
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 4.7e-65 251.5 177 74.0
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.1e-64 250.4 178 74.2
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 1.1e-64 250.4 172 75.0
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 1.4e-64 250.0 198 69.2
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.4e-64 250.0 179 74.9
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 1.4e-64 250.0 169 76.3
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 1.8e-64 249.6 179 71.5
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 5.2e-64 248.1 178 73.6
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 5.2e-64 248.1 179 72.1
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 5.2e-64 248.1 170 77.1
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 9.0e-64 247.3 168 78.0
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 1.2e-63 246.9 172 75.6
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 1.5e-63 246.5 179 71.5
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 1.5e-63 246.5 170 72.9
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 3.4e-63 245.4 176 72.7
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 3.4e-63 245.4 178 73.6
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 3.4e-63 245.4 183 72.7
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 4.4e-63 245.0 175 71.4
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 4.4e-63 245.0 176 72.7
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.4e-63 245.0 169 76.9
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 7.6e-63 244.2 179 72.1
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 9.9e-63 243.8 169 74.6
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 9.9e-63 243.8 169 74.6
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 1.7e-62 243.0 169 74.6
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 2.2e-62 242.7 169 74.0
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 2.9e-62 242.3 169 74.6
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 6.4e-62 241.1 175 70.3
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 8.4e-62 240.7 177 70.6
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 1.1e-61 240.4 175 70.9
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 1.4e-61 240.0 149 81.2
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.4e-61 240.0 211 64.5
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 4.2e-61 238.4 149 80.5
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 4.2e-61 238.4 169 74.0
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 1.2e-60 236.9 176 69.3
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 2.1e-60 236.1 169 72.2
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 3.5e-60 235.3 175 70.3
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 4.6e-60 235.0 170 73.5
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 7.8e-60 234.2 176 69.3
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.7e-59 233.0 158 77.8
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 2.3e-59 232.6 172 72.7
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 5.1e-59 231.5 160 75.6
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 1.1e-58 230.3 169 72.2
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 8.1e-57 224.2 170 70.6
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.8e-56 223.0 201 62.7
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 5.3e-56 221.5 174 67.2
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 1.5e-55 219.9 161 72.0
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 1.5e-55 219.9 145 79.3
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 6.4e-46 188.0 132 76.5
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 3.2e-45 185.7 171 62.0
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 4.2e-45 185.3 162 58.6
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.3e-43 179.5 170 62.9
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 6.7e-43 177.9 162 56.2
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 6.7e-43 177.9 116 79.3
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 1.9e-42 176.4 116 77.6
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 2.1e-41 172.9 116 80.2
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 3.7e-41 172.2 165 53.3
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 1.4e-40 170.2 167 52.7
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 1.8e-40 169.9 165 55.8
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 1.3e-35 153.7 86 88.4
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 1.9e-34 149.8 171 52.0
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 4.3e-34 148.7 83 86.7
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 5.7e-34 148.3 163 50.3
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 1.6e-33 146.7 222 42.3
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 3.7e-33 145.6 96 80.2
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.4e-32 142.9 156 55.1
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.1e-32 142.1 191 49.2
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 1.4e-29 133.7 86 74.4
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 1.9e-29 133.3 164 46.3
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 3.2e-29 132.5 83 77.1
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 8.8e-27 124.4 136 53.7
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.5e-26 123.6 116 62.9
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 5.7e-26 121.7 93 68.8
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 1.5e-23 113.6 113 60.2
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.0e-23 113.2 90 65.6
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 2.6e-23 112.8 87 63.2
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 1.4e-21 107.1 93 62.4
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 5.1e-19 98.6 143 46.9
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 6.7e-19 98.2 75 70.7
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 1.2e-12 77.4 52 69.2
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 2.1e-12 76.6 223 31.4
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 1.4e-11 73.9 53 66.0
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 1.8e-11 73.6 50 68.0
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 2.8e-09 66.2 42 69.0
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 2.4e-08 63.2 84 45.2
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 9.1e-08 61.2 160 31.9


User provided reference genes

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