Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G101400 Phaseolus vulgaris HOM05D008579 ORTHO05D010245 1.1e-47 193.0 94 100.0
Glyma.20G185000 Glycine max HOM05D008579 ORTHO05D010245 7.6e-38 160.2 95 83.2
Glyma.10G205400 Glycine max HOM05D008579 ORTHO05D010245 6.4e-37 157.1 95 82.1
Lj3g0023630 Lotus japonicus HOM05D008579 ORTHO05D010245 9.9e-30 133.3 94 64.9
Lj5g0012204 Lotus japonicus HOM05D008579 ORTHO05D010245 9.9e-30 133.3 94 64.9
Lalb_Chr02g0151861 Lupinus albus HOM05D008579 ORTHO05D010245 2.7e-27 125.2 94 60.6
Glyma.01G090400 Glycine max HOM05D008579 ORTHO05D010245 1.3e-26 122.9 96 63.5
Glyma.02G131300 Glycine max HOM05D008579 ORTHO05D010245 9.6e-25 116.7 97 61.9
Medtr1g093920 Medicago truncatula HOM05D008579 ORTHO05D010245 2.6e-22 108.6 97 58.8
TPR.G2700 Trifolium pratense HOM05D008579 ORTHO05D010245 3.8e-21 104.8 95 57.9
Lalb_Chr04g0255041 Lupinus albus HOM05D008579 ORTHO05D010245 1.6e-19 99.4 96 58.3
TPR.G9816 Trifolium pratense HOM05D008579 ORTHO05D010245 6.7e-18 94.0 97 52.6
Phvul.003G025100 Phaseolus vulgaris HOM05D008579 ORTHO05D010245 3.3e-17 91.7 83 55.4
Lalb_Chr17g0341821 Lupinus albus HOM05D008579 ORTHO05D010245 4.3e-17 91.3 97 55.7
Haze_17414 Corylus avellana HOM05D008579 ORTHO05D010245 3.7e-16 88.2 79 55.7
Prupe.1G303500 Prunus persica HOM05D008579 ORTHO05D010245 2.4e-15 85.5 102 48.0
Lj2g0027990 Lotus japonicus HOM05D008579 ORTHO05D010245 3.1e-15 85.1 98 52.0
RcHm_v2.0_Chr4g0436131 Rosa chinensis HOM05D008579 ORTHO05D010245 7.7e-14 80.5 77 51.9
Nn4g23678 Nelumbo nucifera HOM05D008579 ORTHO05D010245 1.3e-13 79.7 100 50.0
Ciclev10033191m.g Citrus clementina HOM05D008579 ORTHO05D010245 1.7e-13 79.3 89 49.4
Thecc.02G363200 Theobroma cacao HOM05D008579 ORTHO05D010245 3.8e-13 78.2 77 49.4
Hma1.2p1_0605F.1_g187880 Hydrangea macrophylla HOM05D008579 ORTHO05D010245 2.7e-11 72.0 80 46.2
Sed0027044 Sechium edule HOM05D008579 ORTHO05D010245 2.7e-11 72.0 80 50.0
Gohir.A12G172600 Gossypium hirsutum HOM05D008579 ORTHO05D010245 4.6e-11 71.2 77 45.5
Gohir.D12G175100 Gossypium hirsutum HOM05D008579 ORTHO05D010245 4.6e-11 71.2 77 45.5
QL01p000876 Quercus lobata HOM05D008579 ORTHO05D010245 4.6e-11 71.2 91 45.1
Sed0026635 Sechium edule HOM05D008579 ORTHO05D010245 6.1e-11 70.9 88 46.6
COL.COLO4_07854 Corchorus olitorius HOM05D008579 ORTHO05D010245 2.3e-10 68.9 54 59.3
Potri.010G131500 Populus trichocarpa HOM05D008579 ORTHO05D010245 2.3e-10 68.9 77 48.1
ClCG05G023140 Citrullus lanatus HOM05D008579 ORTHO05D010245 3.0e-10 68.6 85 47.1
Potri.008G114600 Populus trichocarpa HOM05D008579 ORTHO05D010245 3.9e-10 68.2 93 40.9
CsaV3_5G033860 Cucumis sativus L. HOM05D008579 ORTHO05D010245 8.8e-10 67.0 67 50.7
Eucgr.G02368 Eucalyptus grandis HOM05D008579 ORTHO05D010245 8.8e-10 67.0 89 43.8
Nn3g17676 Nelumbo nucifera HOM05D008579 ORTHO05D010245 8.8e-10 67.0 69 52.2
Gorai.008G187700 Gossypium raimondii HOM05D008579 ORTHO05D010245 1.5e-09 66.2 80 43.8
Solyc05g010000.1 Solanum lycopersicum HOM05D022312 ORTHO05D014564 1.5e-09 66.2 95 40.0
Sopen05g005810 Solanum pennellii HOM05D022312 ORTHO05D014564 5.7e-09 64.3 95 40.0
Thhalv10019748m.g Eutrema salsugineum HOM05D010485 ORTHO05D010245 2.2e-08 62.4 80 45.0
Peaxi162Scf00367g00073 Petunia axillaris HOM05D022312 ORTHO05D014564 2.2e-08 62.4 94 41.5
MELO3C012204.2 Cucumis melo HOM05D008579 ORTHO05D010245 2.8e-08 62.0 67 50.7
Sp5g23880 Schrenkiella parvula HOM05D010485 ORTHO05D010245 2.8e-08 62.0 79 43.0
Manes.06G074200 Manihot esculenta HOM05D008579 ORTHO05D010245 6.3e-08 60.8 88 42.0
BcaB05g24410 Brassica carinata HOM05D010485 ORTHO05D010245 8.2e-08 60.5 79 41.8
CARHR061590 Cardamine hirsuta HOM05D010485 ORTHO05D010245 8.2e-08 60.5 79 40.5
Lsat_1_v5_gn_4_17220 Lactuca sativa HOM05D008579 ORTHO05D010245 1.1e-07 60.1 94 41.5
Manes.14G096100 Manihot esculenta HOM05D008579 ORTHO05D010245 1.4e-07 59.7 89 40.4
Peaxi162Scf00188g00055 Petunia axillaris HOM05D013623 ORTHO05D014564 4.1e-07 58.2 87 39.1
BcaC03g14985 Brassica carinata HOM05D010485 ORTHO05D010245 5.3e-07 57.8 79 40.5
C02p25180 Brassica napus HOM05D010485 ORTHO05D010245 5.3e-07 57.8 79 40.5
BolC2t08597H Brassica oleracea HOM05D010485 ORTHO05D010245 5.3e-07 57.8 79 40.5
AT1G68765 Arabidopsis thaliana HOM05D010485 ORTHO05D010245 9.1e-07 57.0 81 39.5
CSS0039536 Camellia sinensis var. sinensis HOM05D008579 ORTHO05D010245 9.1e-07 57.0 66 48.5
A02p15330 Brassica napus HOM05D010485 ORTHO05D010245 1.2e-06 56.6 79 39.2
BraA02t06594Z Brassica rapa HOM05D010485 ORTHO05D010245 1.2e-06 56.6 79 39.2
AL2G27710 Arabidopsis lyrata HOM05D010485 ORTHO05D010245 2.0e-06 55.8 79 39.2
ECA246G2817 Erigeron canadensis HOM05D008579 ORTHO05D010245 2.0e-06 55.8 73 41.1
Sed0005216 Sechium edule HOM05D008579 ORTHO05D010245 2.0e-06 55.8 37 67.6
THA.LOC104805239 Tarenaya hassleriana HOM05D010662 ORTHO05D012734 2.0e-06 55.8 76 36.8
ClCG01G005780 Citrullus lanatus HOM05D008579 ORTHO05D010245 3.4e-06 55.1 84 41.7
AT3G25655 Arabidopsis thaliana HOM05D010662 ORTHO05D012734 5.9e-06 54.3 83 36.1
C04p37640 Brassica napus HOM05D010485 ORTHO05D010245 5.9e-06 54.3 79 38.0
BolC4t25334H Brassica oleracea HOM05D010485 ORTHO05D010245 5.9e-06 54.3 79 38.0
BcaB03g15847 Brassica carinata HOM05D010485 ORTHO05D010245 7.7e-06 53.9 73 42.5


User provided reference genes

Program Settings