Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G100966 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 7.8e-94 347.1 167 100.0
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 5.8e-89 330.9 163 97.5
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 6.6e-85 317.4 163 93.9
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 2.5e-84 315.5 163 92.0
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 1.9e-76 289.3 163 86.5
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 2.5e-76 288.9 163 86.5
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 9.6e-76 287.0 163 84.0
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 2.8e-75 285.4 163 85.3
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 8.1e-75 283.9 163 84.0
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 1.1e-74 283.5 163 85.3
MD10G1227200 Malus domestica HOM05D003515 ORTHO05D004347 4.0e-74 281.6 163 82.8
TPR.G22047 Trifolium pratense HOM05D003515 ORTHO05D004347 5.2e-74 281.2 160 85.6
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 2.0e-73 279.3 160 85.0
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 2.6e-73 278.9 163 82.8
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 5.8e-73 277.7 163 82.8
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 7.6e-73 277.3 163 81.6
Gohir.A05G245600 Gossypium hirsutum HOM05D003515 ORTHO05D004347 7.6e-73 277.3 163 81.6
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 7.6e-73 277.3 163 81.6
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 9.9e-73 276.9 163 81.6
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 1.3e-72 276.6 168 82.1
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 1.3e-72 276.6 160 83.1
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 1.7e-72 276.2 163 81.0
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 1.7e-72 276.2 160 83.8
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 2.9e-72 275.4 164 81.7
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 3.8e-72 275.0 163 81.6
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 3.8e-72 275.0 160 84.4
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 3.8e-72 275.0 163 81.6
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 4.9e-72 274.6 163 80.4
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 6.4e-72 274.2 160 83.8
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 1.4e-71 273.1 163 79.8
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 3.2e-71 271.9 163 78.5
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 4.2e-71 271.6 163 79.1
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 4.2e-71 271.6 163 79.1
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 5.4e-71 271.2 162 82.1
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 7.1e-71 270.8 160 82.5
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 7.1e-71 270.8 160 82.5
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 4.6e-70 268.1 160 81.2
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 4.6e-70 268.1 163 78.5
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 7.8e-70 267.3 162 79.6
Aa31LG9G8430 Aethionema arabicum HOM05D003515 ORTHO05D004347 2.3e-69 265.8 163 76.7
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 2.3e-69 265.8 163 76.1
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 2.3e-69 265.8 162 80.2
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 3.0e-69 265.4 163 75.5
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 3.9e-69 265.0 162 77.2
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 8.7e-69 263.8 163 77.3
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 1.1e-68 263.5 162 79.0
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 1.1e-68 263.5 160 80.0
Sopen01g017810 Solanum pennellii HOM05D003515 ORTHO05D004347 1.9e-68 262.7 160 76.9
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 2.5e-68 262.3 162 77.8
Sp2g09580 Schrenkiella parvula HOM05D003515 ORTHO05D004347 3.3e-68 261.9 163 76.7
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 4.3e-68 261.5 163 76.1
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 5.6e-68 261.2 160 76.9
AT5G44740 Arabidopsis thaliana HOM05D003515 ORTHO05D004347 7.3e-68 260.8 163 75.5
Potri.003G152600 Populus trichocarpa HOM05D003515 ORTHO05D004347 7.3e-68 260.8 163 75.5
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 9.6e-68 260.4 163 75.5
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 1.6e-67 259.6 163 74.8
AUR62040332 Chenopodium quinoa HOM05D003515 ORTHO05D004347 2.1e-67 259.2 164 73.2
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 2.1e-67 259.2 163 76.7
Nitab4.5_0003190g0020 Nicotiana tabacum HOM05D003515 ORTHO05D004347 2.1e-67 259.2 163 74.8
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 2.8e-67 258.8 163 76.1
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 2.8e-67 258.8 162 74.7
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 4.8e-67 258.1 160 76.9
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 6.2e-67 257.7 163 74.8
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 6.2e-67 257.7 163 74.8
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 6.2e-67 257.7 163 74.8
BcaNung07103 Brassica carinata HOM05D003515 ORTHO05D004347 8.1e-67 257.3 163 74.2
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 1.1e-66 256.9 163 76.1
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 1.8e-66 256.1 162 75.9
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 2.4e-66 255.8 160 74.4
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 2.4e-66 255.8 163 74.2
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 2.4e-66 255.8 160 77.5
BcaNung06821 Brassica carinata HOM05D003515 ORTHO05D004347 3.1e-66 255.4 163 73.6
Sc05g0004760 Simmondsia chinensis HOM05D003515 ORTHO05D004347 3.1e-66 255.4 165 75.8
HPP92_026459 Vanilla planifolia HOM05D003515 ORTHO05D004347 4.0e-66 255.0 163 74.8
CsaV3_6G052970 Cucumis sativus L. HOM05D003515 ORTHO05D004347 5.3e-66 254.6 163 75.5
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 5.3e-66 254.6 164 75.0
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 5.3e-66 254.6 163 75.5
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 1.5e-65 253.1 163 73.6
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.5e-65 253.1 153 77.8
MSTRG.2876 Avicennia marina HOM05D003515 ORTHO05D004347 2.0e-65 252.7 160 74.4
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 2.6e-65 252.3 163 75.5
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 3.4e-65 251.9 164 73.8
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 9.9e-65 250.4 162 74.7
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 1.3e-64 250.0 162 74.1
Zm00001eb152650 Zea mays HOM05D003515 ORTHO05D004347 1.3e-64 250.0 162 73.5
ATR0763G272 Amborella trichopoda HOM05D003515 ORTHO05D004347 1.7e-64 249.6 163 69.9
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 3.8e-64 248.4 162 74.1
CSS0002085 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.4e-63 246.5 153 77.1
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 5.4e-63 244.6 161 72.0
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 7.1e-63 244.2 204 62.7
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.3e-61 240.0 171 69.6
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 1.1e-60 236.9 162 71.6
Nitab4.5_0000254g0140 Nicotiana tabacum HOM05D003515 ORTHO05D004347 1.5e-60 236.5 163 71.8
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 2.5e-60 235.7 220 57.3
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 1.8e-58 229.6 163 68.7
SEGI_02016 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 1.8e-58 229.6 163 68.1
unitig_748.g8071 Utricularia gibba HOM05D003515 ORTHO05D004347 2.2e-56 222.6 160 68.8
PGSC0003DMG402001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 2.2e-48 196.1 119 76.5
AagrBONN_evm.TU.Sc2ySwM_228.4437 Anthoceros agrestis HOM05D003515 ORTHO05D004347 4.6e-46 188.3 157 58.0
SMO118G0165 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 6.7e-45 184.5 156 58.3
Mapoly0100s0031 Marchantia polymorpha HOM05D003515 ORTHO05D004347 1.1e-44 183.7 161 52.8
Pp3c8_17250 Physcomitrium patens HOM05D003515 ORTHO05D004347 3.4e-41 172.2 158 53.2
CDE06G0149 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 6.5e-40 167.9 160 55.6
SMO222G0016 Selaginella moellendorffii HOM05D010282 ORTHO05D004347 1.4e-37 160.2 150 56.7
Sopen01g017590 Solanum pennellii HOM05D003515 ORTHO05D004347 3.3e-36 155.6 110 70.0
Hma1.2p1_0088F.1_g045243 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 3.7e-35 152.1 87 82.8
Hma1.2p1_0088F.1_g045246 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 1.4e-34 150.2 86 82.6
CSS0029110 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.3e-29 132.9 79 83.5
Zm00001eb203100 Zea mays HOM05D003515 ORTHO05D004347 5.1e-29 131.7 83 74.7
SHI28055 Sapria himalayana HOM05D003515 ORTHO05D004347 8.8e-29 131.0 104 64.4
CSS0035626 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.8e-27 125.9 81 70.4
Ah.15g091880 Amaranthus hybridus HOM05D003515 ORTHO05D004347 1.4e-26 123.6 84 66.7
RcHm_v2.0_Chr5g0021111 Rosa chinensis HOM05D003515 ORTHO05D004347 1.4e-26 123.6 83 77.1
CSS0002615 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.4e-26 122.9 81 70.4
CSS0046591 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.4e-26 122.9 102 64.7
RcHm_v2.0_Chr4g0406921 Rosa chinensis HOM05D003515 ORTHO05D004347 1.0e-24 117.5 83 67.5
SHI28056 Sapria himalayana HOM05D003515 ORTHO05D004347 9.4e-23 110.9 87 60.9
CSS0025043 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 8.2e-19 97.8 81 58.0
Psat7g087520 Pisum sativum HOM05D003515 ORTHO05D004347 4.1e-18 95.5 122 49.2
CBR_g30567 Chara braunii HOM05D003515 ORTHO05D004347 2.0e-17 93.2 83 51.8
CSS0041486 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.3e-16 90.5 81 55.6
CSS0030035 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 8.5e-16 87.8 81 54.3
Cre12.g524150 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 8.5e-16 87.8 128 36.7
PGSC0003DMG401001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 8.2e-11 71.2 41 80.5
arahy.Tifrunner.gnm1.ann1.E07S37 Arachis hypogaea HOM05D003509 ORTHO05D001340 2.4e-10 69.7 39 84.6
PRCOL_00006902 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 7.0e-10 68.2 107 36.4
Zm00001eb070690 Zea mays HOM05D003515 ORTHO05D004347 1.0e-08 64.3 41 73.2
Zm00001eb191750 Zea mays HOM05D003515 ORTHO05D004347 1.0e-08 64.3 41 73.2
Zm00001eb225590 Zea mays HOM05D003515 ORTHO05D004347 1.0e-08 64.3 41 73.2
Zm00001eb303570 Zea mays HOM05D003515 ORTHO05D004347 1.0e-08 64.3 41 73.2
Zm00001eb388450 Zea mays HOM05D003515 ORTHO05D004347 1.0e-08 64.3 41 73.2
Zm00001eb440130 Zea mays HOM05D003515 ORTHO05D004347 1.0e-08 64.3 41 73.2
Zm00001eb441390 Zea mays HOM05D003515 ORTHO05D004347 1.0e-08 64.3 41 73.2
Zm00001eb441960 Zea mays HOM05D003515 ORTHO05D004347 1.0e-08 64.3 41 73.2
Cpa.g.sc30.108 Carica papaya HOM05D003515 ORTHO05D010193 2.2e-08 63.2 44 65.9
A03p24150 Brassica napus HOM05D003515 ORTHO05D004347 7.2e-07 58.2 56 55.4


User provided reference genes

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