Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 8.5e-108 393.7 195 100.0
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 2.2e-92 342.4 190 86.3
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 6.5e-92 340.9 190 87.9
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 2.2e-79 299.3 166 89.8
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 3.0e-73 278.9 194 72.7
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 2.0e-72 276.2 184 72.3
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 3.5e-61 238.8 199 61.3
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 4.6e-61 238.4 197 65.0
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 4.6e-61 238.4 197 65.0
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 4.6e-61 238.4 197 65.0
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 4.6e-61 238.4 186 64.0
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 1.2e-58 230.3 193 62.2
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 2.1e-58 229.6 187 63.1
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 2.8e-58 229.2 193 62.2
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 4.7e-58 228.4 189 63.0
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 4.9e-55 218.4 155 69.7
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 6.4e-55 218.0 191 61.3
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 4.1e-54 215.3 190 60.0
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 1.3e-52 210.3 197 58.4
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 2.3e-52 209.5 158 66.5
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 3.0e-52 209.1 196 57.7
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 5.0e-52 208.4 191 58.1
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 1.9e-51 206.5 192 56.2
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 4.3e-51 205.3 189 57.1
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 5.6e-51 204.9 195 58.5
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 7.3e-51 204.5 168 63.7
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 7.3e-51 204.5 195 56.9
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 2.8e-50 202.6 151 67.5
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 4.7e-50 201.8 148 68.2
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 6.2e-50 201.4 167 61.1
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 1.1e-49 200.7 154 67.5
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 3.1e-49 199.1 190 58.4
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 5.2e-49 198.4 195 54.4
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 6.8e-49 198.0 196 56.1
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 8.9e-49 197.6 152 64.5
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 2.0e-48 196.4 152 64.5
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 4.4e-48 195.3 193 53.4
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 7.5e-48 194.5 158 60.1
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 1.7e-47 193.4 158 60.1
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 2.2e-47 193.0 188 59.0
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 3.7e-47 192.2 170 61.2
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 4.9e-47 191.8 192 54.2
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 6.4e-47 191.4 163 62.0
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 8.3e-47 191.0 158 62.0
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 1.9e-46 189.9 135 69.6
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 7.1e-46 188.0 195 56.4
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 1.2e-45 187.2 136 69.1
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 4.6e-45 185.3 196 52.0
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 6.0e-45 184.9 193 53.4
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 3.9e-44 182.2 194 53.6
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 5.1e-44 181.8 106 78.3
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 8.6e-44 181.0 190 52.6
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 8.6e-44 181.0 171 55.6
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 1.1e-43 180.6 182 53.3
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 2.5e-43 179.5 194 52.1
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 2.5e-43 179.5 114 75.4
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 4.3e-43 178.7 100 83.0
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 4.3e-43 178.7 195 51.3
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 2.1e-42 176.4 187 52.4
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.8e-42 176.0 149 59.7
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 4.7e-42 175.3 191 52.4
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 1.1e-41 174.1 189 49.7
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 1.4e-41 173.7 196 52.6
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 2.4e-41 172.9 127 65.4
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 4.0e-41 172.2 194 52.1
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 6.8e-41 171.4 148 60.8
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 6.8e-41 171.4 107 73.8
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 8.9e-41 171.0 190 48.9
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 1.2e-40 170.6 189 50.8
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 1.5e-40 170.2 144 60.4
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 3.4e-40 169.1 107 72.9
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 3.4e-40 169.1 127 63.8
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 3.4e-40 169.1 144 61.1
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 5.8e-40 168.3 174 50.6
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 5.8e-40 168.3 194 49.5
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 2.2e-39 166.4 199 50.3
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 3.8e-39 165.6 130 65.4
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 3.8e-39 165.6 109 67.0
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 4.1e-38 162.2 93 80.6
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 4.1e-38 162.2 195 47.2
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 1.2e-37 160.6 132 62.9
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 1.6e-37 160.2 191 46.6
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 1.6e-37 160.2 93 79.6
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 1.6e-37 160.2 191 46.6
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 1.6e-37 160.2 194 46.9
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 1.6e-37 160.2 179 50.8
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 4.6e-37 158.7 192 45.8
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 1.0e-36 157.5 179 48.6
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.0e-36 157.5 235 40.9
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 1.0e-36 157.5 130 62.3
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 1.3e-36 157.1 236 41.5
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 1.3e-36 157.1 142 54.9
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.3e-36 156.4 236 41.1
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 3.0e-36 156.0 82 85.4
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 3.0e-36 156.0 195 47.7
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 8.6e-36 154.5 157 51.6
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 8.6e-36 154.5 236 41.1
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 1.1e-35 154.1 191 47.1
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 1.5e-35 153.7 199 46.2
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 1.5e-35 153.7 126 64.3
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 1.9e-35 153.3 199 46.2
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 2.5e-35 152.9 199 46.2
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 2.5e-35 152.9 196 46.9
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 9.6e-35 151.0 95 72.6
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 9.6e-35 151.0 95 72.6
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 9.6e-35 151.0 95 72.6
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 9.6e-35 151.0 95 72.6
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 1.6e-34 150.2 197 46.7
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 2.1e-34 149.8 127 59.1
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 4.7e-34 148.7 236 40.3
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 6.2e-34 148.3 191 45.5
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.6e-32 142.9 200 42.5
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 7.6e-32 141.4 78 78.2
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 1.6e-29 133.7 98 61.2
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 3.5e-29 132.5 127 49.6
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 1.7e-28 130.2 146 45.9
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 4.8e-26 122.1 120 50.0
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 9.0e-25 117.9 115 48.7
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.5e-24 117.1 78 66.7
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.7e-23 113.6 139 47.5
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.9e-22 110.2 94 57.4
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 4.2e-22 109.0 72 68.1
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 1.8e-20 103.6 138 43.5
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 3.0e-20 102.8 123 44.7
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 4.3e-19 99.0 120 44.2
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.1e-17 94.4 125 45.6
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 2.9e-15 86.3 72 59.7
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 6.4e-15 85.1 125 42.4
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 1.6e-13 80.5 72 50.0
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 3.5e-13 79.3 87 50.6
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 6.0e-13 78.6 84 47.6
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 4.3e-11 72.4 70 42.9
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 1.6e-10 70.5 150 28.0
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 1.6e-10 70.5 42 71.4
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 3.1e-09 66.2 83 48.2
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 1.2e-08 64.3 96 35.4
unitig_27.g25229 Utricularia gibba HOM05D002826 ORTHO05D003105 7.1e-06 55.1 59 40.7


User provided reference genes

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