Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.5e-175 619.4 314 100.0
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.2e-143 513.5 316 85.1
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 5.1e-139 498.0 319 80.9
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 8.8e-139 497.3 315 81.3
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 4.8e-137 491.5 316 79.4
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 4.2e-133 478.4 295 81.4
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.6e-132 476.5 314 79.3
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 2.7e-132 475.7 314 76.4
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 2.7e-132 475.7 314 77.4
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 3.6e-132 475.3 317 77.9
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 6.1e-132 474.6 317 77.6
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 7.9e-132 474.2 314 77.1
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 7.9e-132 474.2 296 79.7
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.4e-131 473.4 314 76.8
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 1.4e-131 473.4 314 78.3
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 8.8e-131 470.7 295 80.3
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.5e-130 469.9 314 76.1
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 2.0e-130 469.5 314 76.1
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.6e-130 469.2 297 79.5
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 2.6e-130 469.2 314 77.1
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 2.4e-128 462.6 314 77.4
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 2.4e-128 462.6 314 77.4
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 4.1e-128 461.8 314 73.2
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 1.2e-127 460.3 314 75.2
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 2.0e-127 459.5 314 72.6
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 4.5e-127 458.4 314 74.5
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 5.9e-127 458.0 314 74.2
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 3.8e-126 455.3 299 76.6
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.9e-125 453.0 309 74.4
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 7.2e-125 451.1 309 74.1
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 8.0e-124 447.6 297 74.1
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 3.0e-123 445.7 306 74.2
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 3.0e-123 445.7 306 72.2
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 5.2e-123 444.9 315 71.7
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 5.2e-123 444.9 309 73.1
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 6.7e-123 444.5 313 72.2
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 8.8e-123 444.1 306 72.5
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 1.1e-122 443.7 314 72.3
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.1e-122 443.7 314 69.1
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.0e-122 443.0 314 72.6
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 5.7e-122 441.4 318 70.4
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.7e-121 439.9 297 73.4
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.7e-121 439.9 294 74.1
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.2e-121 439.5 310 72.3
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.8e-121 439.1 297 73.1
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.8e-121 439.1 306 71.9
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.3e-121 438.0 297 72.7
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 6.3e-121 438.0 297 72.7
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 6.3e-121 438.0 297 71.4
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.8e-120 436.4 305 74.8
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 2.4e-120 436.0 305 71.5
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 4.1e-120 435.3 297 71.0
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 7.0e-120 434.5 297 70.4
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 1.2e-119 433.7 297 70.0
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 2.6e-119 432.6 304 71.1
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 5.9e-119 431.4 297 72.4
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 5.9e-119 431.4 300 71.3
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.7e-119 431.0 297 71.4
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.3e-118 430.3 317 71.9
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 2.2e-118 429.5 346 63.9
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.9e-118 429.1 300 72.3
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.1e-117 427.2 316 69.6
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.5e-117 426.8 307 68.4
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.5e-117 426.8 301 72.8
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 2.5e-117 426.0 297 69.7
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 3.2e-117 425.6 300 71.0
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 4.2e-117 425.2 301 71.8
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 9.4e-117 424.1 297 68.7
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 1.4e-115 420.2 297 69.0
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.4e-115 420.2 308 68.2
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 3.0e-115 419.1 297 68.4
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 4.0e-115 418.7 297 69.0
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 4.0e-115 418.7 297 68.7
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 4.0e-115 418.7 353 64.0
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 5.2e-115 418.3 309 68.6
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 5.2e-115 418.3 306 68.3
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 5.2e-115 418.3 306 68.3
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 5.2e-115 418.3 297 71.4
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 6.8e-115 417.9 300 70.7
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 1.5e-114 416.8 306 67.6
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 2.6e-114 416.0 297 68.4
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 2.6e-114 416.0 297 68.4
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 2.6e-114 416.0 308 68.8
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 4.4e-114 415.2 306 67.3
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 4.4e-114 415.2 318 67.3
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 5.7e-114 414.8 263 76.4
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 7.5e-114 414.5 377 58.6
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 9.8e-114 414.1 303 70.6
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 2.2e-113 412.9 306 67.0
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.8e-113 412.5 314 67.8
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 3.7e-113 412.1 274 76.3
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 8.3e-113 411.0 297 67.7
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 1.1e-112 410.6 301 69.4
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 1.4e-112 410.2 309 68.6
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.8e-112 409.8 258 77.5
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.8e-112 409.8 300 69.7
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 3.1e-112 409.1 311 66.2
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 4.1e-112 408.7 307 66.8
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 4.1e-112 408.7 312 67.9
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 5.4e-112 408.3 279 71.0
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 5.4e-112 408.3 346 61.8
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 7.0e-112 407.9 297 67.7
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.0e-111 406.4 314 66.9
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.7e-111 406.0 291 69.1
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 3.5e-111 405.6 310 67.7
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.5e-111 405.2 296 68.2
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 1.3e-110 403.7 352 61.4
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.7e-110 403.3 311 66.6
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.0e-110 401.7 296 68.2
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 8.5e-110 401.0 281 70.5
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 3.2e-109 399.1 263 71.9
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.2e-109 398.7 284 70.1
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 3.6e-108 395.6 260 75.4
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 2.3e-107 392.9 340 62.6
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 6.8e-107 391.3 314 65.0
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.0e-106 389.8 304 64.1
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 5.4e-104 381.7 314 63.4
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 3.5e-103 379.0 298 63.8
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 4.5e-103 378.6 300 64.7
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.3e-102 377.1 280 67.5
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.3e-102 377.1 297 62.6
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.5e-101 372.9 298 63.4
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 6.8e-99 364.8 316 61.4
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.2e-98 364.0 301 60.8
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 2.9e-97 359.4 311 63.0
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 7.0e-96 354.8 290 62.1
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.0e-94 350.9 312 59.0
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 1.4e-91 340.5 233 71.2
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 1.3e-89 334.0 277 60.3
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 6.8e-83 311.6 297 53.2
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.8e-82 308.5 231 68.0
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 8.3e-81 304.7 279 55.9
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 4.1e-80 302.4 297 51.5
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 2.3e-78 296.6 298 52.0
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.3e-77 292.7 281 54.4
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 4.3e-77 292.4 308 51.3
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 4.3e-77 292.4 275 56.7
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 5.6e-77 292.0 280 53.9
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 4.0e-75 285.8 204 70.6
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 1.3e-73 280.8 300 49.3
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 2.9e-73 279.6 293 50.2
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 4.9e-73 278.9 196 75.5
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 3.2e-72 276.2 215 69.3
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 5.4e-72 275.4 289 54.0
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 1.7e-70 270.4 275 51.3
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 1.8e-67 260.4 227 59.0
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 9.3e-64 248.1 236 52.5
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.6e-60 237.3 321 48.9
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 2.2e-57 226.9 151 74.8
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 4.2e-56 222.6 148 70.3
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 5.4e-56 222.2 183 59.6
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.7e-55 219.9 170 64.1
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 7.9e-55 218.4 210 51.0
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 8.7e-54 214.9 214 51.9
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 4.2e-48 196.1 284 37.3
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 3.7e-44 183.0 153 58.8
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 7.6e-34 148.7 273 33.0
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 5.5e-32 142.5 106 67.9
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 3.3e-29 133.3 313 28.8
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 2.4e-27 127.1 124 57.3
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 4.2e-24 116.3 220 33.6
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.2e-23 114.8 78 73.1
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 1.5e-21 107.8 287 27.9
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 2.6e-21 107.1 131 50.4
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 6.9e-19 99.0 305 28.9
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.1e-11 75.1 185 37.3
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 3.2e-08 63.5 55 54.5
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 3.2e-08 63.5 40 67.5


User provided reference genes

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