Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 5.9e-226 787.3 437 100.0
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 8.9e-198 693.7 401 95.5
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 8.3e-180 634.0 437 83.1
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 4.3e-176 621.7 431 81.4
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 3.4e-173 612.1 433 81.1
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 3.8e-172 608.6 432 80.1
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 4.2e-171 605.1 441 78.5
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 6.0e-170 601.3 431 79.6
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 1.0e-169 600.5 433 79.7
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 1.1e-155 553.9 438 74.4
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 3.0e-145 519.2 436 72.0
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 7.6e-141 504.6 442 69.0
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 4.9e-140 501.9 481 64.4
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 1.0e-137 494.2 441 68.9
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.9e-137 492.3 433 69.5
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 3.9e-137 492.3 437 68.0
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 6.7e-137 491.5 437 68.0
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 1.6e-135 486.9 466 65.0
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 1.6e-135 486.9 467 64.7
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.4e-134 483.8 466 63.7
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 9.0e-134 481.1 458 64.8
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 9.0e-134 481.1 460 65.7
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 7.7e-133 478.0 463 63.7
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 1.0e-132 477.6 462 64.7
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.7e-132 476.9 433 67.2
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 6.5e-132 474.9 462 63.0
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 1.4e-131 473.8 472 63.8
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 1.9e-131 473.4 427 66.5
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.1e-130 469.9 465 63.0
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 7.9e-130 468.0 433 66.1
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 4.3e-128 462.2 438 64.8
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 5.5e-123 445.3 460 61.5
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 2.7e-122 443.0 431 64.0
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 4.7e-122 442.2 464 61.6
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 3.9e-121 439.1 466 60.7
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 8.8e-121 438.0 452 60.6
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 2.6e-120 436.4 440 64.8
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 5.7e-120 435.3 439 62.9
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.8e-119 433.0 439 62.0
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 1.1e-118 431.0 328 75.9
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 2.0e-117 426.8 447 61.3
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 7.7e-117 424.9 446 62.6
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 2.5e-115 419.9 466 60.1
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 2.8e-111 406.4 442 60.2
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 6.3e-111 405.2 433 59.6
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 1.8e-110 403.7 437 58.8
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 3.1e-110 402.9 438 59.6
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 5.3e-110 402.1 453 58.3
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 5.3e-110 402.1 436 59.2
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 7.0e-110 401.7 437 58.8
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 9.1e-110 401.4 445 57.8
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 3.5e-109 399.4 424 60.1
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.7e-108 397.1 439 58.5
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 5.0e-108 395.6 492 53.0
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 5.0e-108 395.6 440 59.1
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 5.0e-108 395.6 440 59.1
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 1.9e-107 393.7 433 58.2
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 5.5e-107 392.1 436 58.7
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 7.2e-107 391.7 479 56.4
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 4.7e-106 389.0 433 57.3
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 1.0e-105 387.9 450 56.9
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 2.3e-105 386.7 439 57.9
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 1.2e-104 384.4 424 58.0
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 1.5e-104 384.0 451 56.3
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 5.7e-104 382.1 362 64.6
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 1.3e-103 380.9 467 54.4
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 1.7e-103 380.6 652 46.0
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 2.8e-103 379.8 427 59.3
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 3.7e-103 379.4 430 57.0
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 2.7e-101 373.2 433 55.4
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 4.5e-101 372.5 438 54.1
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 4.5e-101 372.5 424 56.1
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 5.9e-101 372.1 274 77.0
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 7.7e-101 371.7 436 56.7
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 1.0e-100 371.3 432 55.3
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 1.5e-99 367.5 460 54.3
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 1.5e-96 357.5 439 53.5
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 1.5e-96 357.5 442 54.1
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 3.4e-96 356.3 428 55.8
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 3.4e-96 356.3 431 54.5
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 1.7e-95 354.0 427 53.4
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 6.3e-95 352.1 424 53.8
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 8.3e-95 351.7 461 52.3
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 4.1e-94 349.4 462 51.5
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 2.7e-93 346.7 520 47.7
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 8.6e-92 341.7 436 54.1
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 1.9e-91 340.5 432 50.7
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 6.8e-89 332.0 520 46.7
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 2.6e-88 330.1 468 51.1
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 7.5e-88 328.6 437 51.5
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 1.1e-83 314.7 430 49.8
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 7.3e-83 312.0 436 52.1
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 3.4e-80 303.1 458 47.8
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.3e-79 301.2 467 47.5
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 4.9e-79 299.3 430 49.3
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 1.1e-78 298.1 452 47.8
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 4.1e-78 296.2 448 47.5
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 2.6e-72 276.9 256 66.4
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 6.4e-71 272.3 438 47.3
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 2.4e-70 270.4 444 46.4
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 2.7e-69 266.9 298 58.1
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 1.7e-68 264.2 427 43.6
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.9e-67 260.8 431 47.1
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 1.1e-65 255.0 233 67.4
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.2e-61 241.5 347 49.9
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 6.2e-58 229.2 247 53.8
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 8.4e-55 218.8 290 52.8
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 8.1e-50 202.2 281 46.3
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 5.3e-49 199.5 329 42.9
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 1.3e-47 194.9 476 37.4
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.4e-41 174.9 475 35.2
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 1.2e-37 161.8 274 39.8
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 2.1e-34 151.0 250 44.8
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.1e-30 138.7 169 56.2
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 3.1e-25 120.6 88 81.8
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 5.0e-23 113.2 104 63.5
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 5.0e-23 113.2 104 63.5
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 1.2e-21 108.6 188 45.7
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 2.3e-20 104.4 356 31.5
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 3.9e-20 103.6 93 63.4
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 3.9e-20 103.6 93 63.4
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 5.3e-17 93.2 334 31.4
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 2.6e-16 90.9 164 44.5
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 2.7e-13 80.9 93 52.7
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 1.0e-12 79.0 50 84.0
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.8e-12 78.2 151 43.0
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 7.4e-11 72.8 237 32.9
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 3.1e-09 67.4 66 54.5
Actinidia03037 Actinidia chinensis HOM05D005934 ORTHO05D005165 4.5e-08 63.5 142 33.1
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 1.3e-07 62.0 84 47.6


User provided reference genes

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