Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 8.7e-42 175.6 90 100.0
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 1.1e-33 148.7 83 89.2
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 1.6e-32 144.8 84 82.1
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 3.7e-24 117.1 83 72.3
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 1.4e-23 115.2 82 72.0
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 1.8e-23 114.8 82 68.3
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 2.4e-23 114.4 83 72.3
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 1.5e-22 111.7 84 69.0
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.6e-22 110.9 83 72.3
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 4.5e-22 110.2 84 67.9
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 4.5e-22 110.2 84 67.9
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 7.7e-22 109.4 75 73.3
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 2.9e-21 107.5 83 67.5
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 2.9e-21 107.5 79 69.6
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 1.2e-19 102.1 81 69.1
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 1.3e-16 92.0 80 57.5
arahy.Tifrunner.gnm1.ann1.HZQS8U Arachis hypogaea HOM05D005287 ORTHO05D006893 4.8e-16 90.1 84 61.9
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 4.8e-16 90.1 80 56.2
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 4.1e-15 87.0 73 60.3
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 7.0e-15 86.3 73 57.5
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 1.6e-14 85.1 80 53.8
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.0e-14 84.7 71 60.6
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 2.0e-14 84.7 80 57.5
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 2.6e-14 84.3 93 50.5
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 3.5e-14 84.0 88 47.7
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 5.9e-14 83.2 77 55.8
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 1.0e-13 82.4 75 56.0
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 2.9e-13 80.9 67 58.2
arahy.Tifrunner.gnm1.ann1.EI05U6 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.8e-13 80.5 58 70.7
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 3.8e-13 80.5 80 51.2
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 3.8e-13 80.5 77 51.9
arahy.Tifrunner.gnm1.ann1.KL2II8 Arachis hypogaea HOM05D005287 ORTHO05D006893 6.5e-13 79.7 69 63.8
arahy.Tifrunner.gnm1.ann1.XEFQ2J Arachis hypogaea HOM05D005287 ORTHO05D006893 6.5e-13 79.7 69 65.2
arahy.Tifrunner.gnm1.ann1.DD86YU Arachis hypogaea HOM05D005287 ORTHO05D006893 8.5e-13 79.3 69 63.8
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 1.1e-12 79.0 77 51.9
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 1.1e-12 79.0 84 50.0
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 1.9e-12 78.2 71 56.3
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 3.2e-12 77.4 77 50.6
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 3.2e-12 77.4 75 49.3
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 3.2e-12 77.4 83 51.8
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 3.2e-12 77.4 78 50.0
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 3.2e-12 77.4 71 53.5
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 7.2e-12 76.3 77 51.9
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 9.4e-12 75.9 83 49.4
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 1.6e-11 75.1 91 45.1
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 1.6e-11 75.1 96 43.8
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 1.6e-11 75.1 83 49.4
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 1.6e-11 75.1 77 49.4
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 2.1e-11 74.7 71 52.1
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 2.1e-11 74.7 83 49.4
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 2.7e-11 74.3 71 46.5
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 2.7e-11 74.3 75 49.3
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 3.6e-11 73.9 96 44.8
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 3.6e-11 73.9 96 44.8
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 3.6e-11 73.9 77 51.9
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 6.1e-11 73.2 75 46.7
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 6.1e-11 73.2 54 63.0
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 8.0e-11 72.8 72 52.8
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 1.0e-10 72.4 93 40.9
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 1.8e-10 71.6 70 58.6
VMungo0251G1192 Vigna mungo HOM05D017878 ORTHO05D018225 2.3e-10 71.2 31 100.0
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 3.0e-10 70.9 76 46.1
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 4.0e-10 70.5 95 43.2
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 8.8e-10 69.3 72 50.0
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 8.8e-10 69.3 69 46.4
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.1e-09 68.9 66 48.5
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 1.1e-09 68.9 67 49.3
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 1.5e-09 68.6 71 47.9
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 3.3e-09 67.4 95 42.1
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 3.3e-09 67.4 75 46.7
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 4.4e-09 67.0 66 47.0
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 4.4e-09 67.0 66 47.0
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 7.5e-09 66.2 86 38.4
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 7.5e-09 66.2 70 54.3
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 7.5e-09 66.2 70 47.1
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 9.7e-09 65.9 65 46.2
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 9.7e-09 65.9 71 47.9
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.7e-08 65.1 61 50.8
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.7e-08 65.1 61 50.8
arahy.Tifrunner.gnm1.ann1.2BF3AS Arachis hypogaea HOM05D005287 ORTHO05D006893 2.2e-08 64.7 42 59.5
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 4.8e-08 63.5 68 51.5
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 8.2e-08 62.8 84 39.3
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 8.2e-08 62.8 84 38.1
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 3.1e-07 60.8 87 40.2
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 4.1e-07 60.5 71 45.1
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 9.1e-07 59.3 60 48.3
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 2.0e-06 58.2 63 42.9
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 2.7e-06 57.8 65 41.5
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 4.5e-06 57.0 72 40.3


User provided reference genes

Program Settings