Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 2.6e-106 388.7 186 100.0
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.4e-99 366.3 186 91.9
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.6e-92 342.8 186 85.5
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 6.2e-92 340.9 186 87.1
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.4e-88 329.7 186 82.3
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 3.2e-88 328.6 180 84.4
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 1.9e-85 319.3 186 78.5
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 4.8e-84 314.7 182 80.8
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 2.4e-83 312.4 186 79.6
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 2.6e-82 308.9 187 77.5
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 4.2e-80 301.6 185 74.1
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 1.2e-79 300.1 186 77.4
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 1.2e-79 300.1 181 74.6
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.6e-79 299.7 182 76.4
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 6.0e-79 297.7 181 74.0
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 7.9e-79 297.4 181 73.5
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 2.5e-77 292.4 180 72.2
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 2.5e-77 292.4 181 71.3
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 8.2e-76 287.3 181 71.3
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.1e-75 287.0 181 70.7
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.1e-75 287.0 186 69.9
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.4e-75 286.6 181 71.8
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 5.3e-75 284.6 182 72.0
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 6.9e-75 284.3 188 70.7
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 1.2e-74 283.5 172 75.6
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 2.0e-74 282.7 181 74.0
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.0e-74 282.7 180 72.8
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 2.6e-74 282.3 181 71.3
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 3.4e-74 282.0 186 69.4
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 4.5e-74 281.6 180 71.7
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.0e-73 280.4 188 69.7
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 2.2e-73 279.3 181 69.6
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 3.8e-73 278.5 186 69.4
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 6.5e-73 277.7 182 69.8
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 6.5e-73 277.7 182 69.8
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 6.5e-73 277.7 187 68.4
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 1.1e-72 276.9 184 69.0
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.9e-72 276.2 182 70.3
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.9e-72 276.2 184 68.5
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 2.5e-72 275.8 186 68.8
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 3.2e-72 275.4 181 69.1
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 7.1e-72 274.2 182 69.8
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 7.1e-72 274.2 184 67.9
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 1.2e-71 273.5 186 66.7
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 1.6e-71 273.1 178 68.5
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 3.5e-71 271.9 184 68.5
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 6.0e-71 271.2 182 68.7
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 6.0e-71 271.2 186 67.7
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 7.9e-71 270.8 182 68.7
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 1.3e-70 270.0 183 68.9
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 1.8e-70 269.6 186 67.2
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 3.0e-70 268.9 194 64.9
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 5.1e-70 268.1 182 69.8
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 5.1e-70 268.1 184 67.9
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 3.3e-69 265.4 180 67.8
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 5.7e-69 264.6 184 66.8
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 9.7e-69 263.8 182 65.9
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.3e-68 263.5 165 73.9
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 2.2e-68 262.7 181 67.4
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 2.8e-68 262.3 185 65.4
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 4.1e-67 258.5 192 59.4
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 4.1e-67 258.5 181 65.2
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 9.0e-67 257.3 178 65.7
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 3.4e-66 255.4 181 63.5
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 4.5e-66 255.0 181 66.3
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 4.5e-66 255.0 182 61.0
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 7.7e-66 254.2 187 65.8
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 7.7e-66 254.2 185 63.8
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 1.0e-65 253.8 199 61.3
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 1.0e-65 253.8 181 64.6
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.3e-65 253.4 164 72.0
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 1.7e-65 253.1 181 63.5
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.7e-65 253.1 194 63.4
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 5.0e-65 251.5 175 66.3
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 1.4e-64 250.0 180 63.9
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.9e-64 249.6 185 61.1
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 5.5e-64 248.1 181 62.4
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 1.2e-63 246.9 163 69.9
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.6e-63 246.5 180 58.9
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 2.7e-63 245.7 185 62.2
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 1.8e-62 243.0 254 50.8
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 6.7e-62 241.1 187 58.8
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 8.8e-62 240.7 184 60.3
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 8.8e-62 240.7 185 61.1
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 8.8e-62 240.7 185 61.1
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 8.8e-62 240.7 184 60.3
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.5e-61 240.0 185 58.9
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 9.7e-61 237.3 165 66.1
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 9.7e-61 237.3 179 64.2
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 1.3e-60 236.9 183 61.7
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 1.3e-60 236.9 186 60.8
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 1.3e-60 236.9 181 59.1
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 1.3e-60 236.9 165 64.8
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 3.7e-60 235.3 184 58.7
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.4e-59 233.4 181 59.7
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.5e-58 229.9 180 61.1
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.0e-58 229.6 176 58.5
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.9e-58 228.0 181 58.0
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 1.0e-57 227.3 160 61.9
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.0e-57 227.3 150 69.3
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 8.5e-57 224.2 180 57.8
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 1.1e-56 223.8 137 75.2
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 5.5e-56 221.5 133 75.9
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.2e-55 220.3 166 65.7
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 1.6e-55 219.9 133 72.9
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 1.6e-55 219.9 179 55.3
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 1.6e-55 219.9 133 75.2
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 2.1e-55 219.5 175 57.7
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 6.7e-54 214.5 181 59.1
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 4.8e-52 208.4 183 53.0
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.1e-51 207.2 160 62.5
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.4e-51 206.1 143 69.2
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 7.0e-51 204.5 186 58.6
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 5.9e-50 201.4 189 50.3
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 7.7e-50 201.1 164 57.9
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 1.1e-48 197.2 163 62.0
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 4.8e-44 181.8 189 48.7
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.2e-44 181.0 167 50.9
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.4e-43 180.3 169 51.5
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 4.1e-43 178.7 112 68.8
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.0e-43 177.9 169 49.7
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.0e-43 177.9 162 51.9
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.4e-38 163.7 161 49.1
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.8e-36 156.0 139 51.8
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 1.1e-35 154.1 181 43.1
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.1e-35 151.0 128 54.7
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 2.0e-34 149.8 184 41.3
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 3.5e-34 149.1 186 41.9
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 7.7e-34 147.9 114 57.9
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.7e-34 147.9 169 43.8
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 2.5e-32 142.9 90 71.1
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.6e-31 139.0 88 69.3
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 1.6e-23 113.6 194 37.1
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.3e-20 104.0 114 46.5
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.2e-19 97.8 87 50.6
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 9.8e-13 77.8 49 75.5
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 1.7e-12 77.0 49 75.5
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.6e-10 70.5 49 67.3
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 4.6e-10 68.9 49 67.3
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 2.3e-09 66.6 50 66.0
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 1.1e-08 64.3 108 35.2
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-08 64.3 53 52.8


User provided reference genes

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