Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 2.3e-193 678.7 334 100.0
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 4.0e-182 641.3 334 93.4
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 1.4e-171 606.3 335 88.4
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.8e-166 589.3 337 86.4
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 8.4e-156 553.9 334 81.4
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 2.4e-155 552.4 334 78.1
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 5.4e-155 551.2 334 77.8
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 1.1e-152 543.5 330 80.9
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 4.5e-149 531.6 334 77.2
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.9e-148 528.9 324 76.2
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.4e-147 526.6 328 77.1
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 1.6e-146 523.1 328 77.1
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 1.6e-146 523.1 312 76.3
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.8e-145 519.6 326 74.8
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 3.7e-143 511.9 330 70.9
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 6.9e-142 507.7 389 64.8
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 4.5e-141 505.0 330 73.3
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 2.2e-140 502.7 329 72.3
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 8.4e-140 500.7 329 71.4
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 3.2e-139 498.8 328 70.1
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.0e-137 493.8 329 69.3
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 6.7e-137 491.1 329 71.1
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 9.6e-136 487.3 330 68.8
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 2.1e-135 486.1 330 69.1
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.8e-135 485.7 330 68.8
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.1e-134 483.8 331 70.7
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.3e-134 481.5 314 71.7
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 6.9e-134 481.1 314 71.0
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 6.9e-134 481.1 314 71.0
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.5e-133 479.9 321 71.0
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.0e-133 479.6 327 68.8
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.0e-133 479.6 327 68.8
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 4.5e-133 478.4 328 68.9
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 4.5e-133 478.4 327 68.5
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 7.6e-133 477.6 325 69.5
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 2.9e-132 475.7 332 67.8
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 2.9e-132 475.7 331 67.1
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 6.5e-132 474.6 354 66.4
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 1.9e-131 473.0 315 68.6
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.9e-131 473.0 329 66.9
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 3.2e-131 472.2 334 68.3
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 2.1e-130 469.5 325 68.9
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.3e-129 466.8 333 67.6
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.3e-129 466.8 378 61.1
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.3e-129 466.8 331 66.8
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 1.3e-129 466.8 328 67.1
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 5.1e-129 464.9 324 66.4
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 1.5e-128 463.4 330 66.7
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.9e-128 463.0 343 66.2
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 2.5e-128 462.6 334 66.8
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 4.3e-128 461.8 314 68.8
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 1.3e-127 460.3 308 70.8
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 2.2e-127 459.5 334 66.5
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 2.8e-127 459.1 325 68.3
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.8e-126 456.4 328 68.3
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.8e-126 456.4 327 66.1
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 3.1e-126 455.7 328 68.0
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 3.1e-126 455.7 328 68.0
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 6.9e-126 454.5 372 60.2
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 1.2e-125 453.8 307 68.7
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.7e-124 449.9 340 66.5
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 2.2e-124 449.5 305 70.2
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.4e-123 446.8 331 65.9
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.4e-123 446.8 328 67.7
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 1.9e-123 446.4 324 67.0
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 5.5e-123 444.9 330 66.4
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 9.4e-123 444.1 330 66.4
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 5.1e-121 438.3 303 69.0
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 2.0e-120 436.4 297 69.0
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 4.3e-120 435.3 340 60.9
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 4.3e-120 435.3 340 60.9
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 9.7e-120 434.1 319 65.2
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 9.7e-120 434.1 324 64.2
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.3e-119 433.7 323 65.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 3.7e-119 432.2 325 63.7
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.4e-118 429.5 321 65.1
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 4.1e-118 428.7 323 64.4
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.1e-118 428.7 330 64.8
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 5.0e-116 421.8 324 63.0
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.0e-113 414.1 300 66.3
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 1.8e-113 413.3 320 61.6
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.5e-112 410.2 262 71.8
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.6e-112 409.5 310 61.6
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 4.4e-112 408.7 310 63.2
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.4e-112 408.7 274 72.3
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 7.4e-112 407.9 264 70.8
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 4.8e-111 405.2 269 69.5
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.1e-110 404.1 310 61.3
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.4e-110 403.7 302 64.2
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.1e-110 402.5 263 73.8
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.0e-108 397.5 230 79.6
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 6.5e-108 394.8 325 60.3
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.1e-107 394.0 318 60.4
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.9e-107 393.3 315 59.4
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 5.5e-107 391.7 255 72.9
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 3.0e-105 386.0 382 53.7
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 4.0e-105 385.6 323 59.8
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.0e-104 383.3 251 70.5
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 2.4e-102 376.3 248 70.6
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 1.5e-99 367.1 330 55.2
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.2e-98 364.0 316 57.6
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 3.6e-98 362.5 209 75.6
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 4.7e-98 362.1 320 55.9
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 1.0e-97 360.9 406 49.8
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 1.4e-97 360.5 320 58.4
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.8e-97 360.1 245 68.2
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 2.6e-96 356.3 315 55.6
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.4e-94 350.5 337 54.9
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 3.5e-93 345.9 325 55.7
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.5e-93 345.9 338 54.7
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 5.9e-93 345.1 307 56.4
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.0e-92 344.4 348 52.0
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.5e-91 338.6 340 53.5
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.6e-90 337.0 325 54.8
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 8.0e-90 334.7 342 53.5
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 1.0e-89 334.3 306 55.9
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 2.3e-89 333.2 296 56.1
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 7.5e-88 328.2 329 54.1
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 8.6e-84 314.7 275 58.2
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 4.3e-83 312.4 386 45.1
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 8.9e-81 304.7 339 51.0
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 9.2e-78 294.7 274 52.9
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 7.8e-77 291.6 250 56.8
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 7.8e-69 265.0 313 45.4
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.8e-66 256.5 302 45.7
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.3e-63 247.7 315 42.5
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 3.2e-62 243.0 305 44.3
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.7e-61 240.0 302 42.7
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 6.2e-58 228.8 241 51.9
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 4.0e-57 226.1 139 70.5
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 4.0e-57 226.1 146 69.2
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 1.1e-51 208.0 164 61.0
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 2.5e-51 206.8 113 82.3
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.1e-49 201.4 159 58.5
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.8e-49 200.7 255 40.0
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 3.1e-49 199.9 330 40.3
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.5e-48 197.6 254 42.1
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 6.4e-47 192.2 199 45.7
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 3.6e-42 176.4 248 41.9
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 6.2e-42 175.6 90 90.0
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.1e-41 174.9 301 35.9
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.6e-37 161.0 229 41.0
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 4.9e-31 139.4 271 32.1
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 8.4e-31 138.7 260 33.8
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.2e-30 136.3 239 35.1
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 5.5e-30 136.0 254 34.3
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 4.3e-27 126.3 393 26.7
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.1e-25 120.2 163 40.5
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.4e-24 116.7 160 42.5
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 5.8e-24 115.9 302 30.8
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 5.5e-22 109.4 67 73.1
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 5.5e-22 109.4 67 73.1
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 1.2e-21 108.2 113 40.7
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 1.2e-21 108.2 112 40.2
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 1.2e-21 108.2 67 71.6
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 3.5e-21 106.7 84 60.7
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.9e-19 100.9 211 31.3
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 7.4e-19 99.0 126 51.6
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 9.6e-19 98.6 60 80.0
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 1.6e-18 97.8 325 25.8
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 2.6e-16 90.5 80 57.5
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.7e-15 87.8 248 25.4
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 5.1e-12 76.3 86 46.5
PGR042G2939 Punica granatum HOM05D002901 ORTHO05D003183 3.4e-08 63.5 50 60.0
COL.COLO4_33299 Corchorus olitorius HOM05D004272 ORTHO05D005020 4.5e-08 63.2 64 56.2


User provided reference genes

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