Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.4e-133 478.4 253 100.0
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 2.8e-119 432.2 253 90.1
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 2.2e-116 422.5 247 91.1
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 9.3e-115 417.2 252 85.7
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.4e-102 375.9 253 77.5
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 1.0e-100 370.5 254 77.2
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 9.3e-99 364.0 253 75.5
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 5.1e-97 358.2 251 73.3
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 6.9e-94 347.8 244 73.8
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 1.0e-92 344.0 239 75.3
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 3.9e-89 332.0 236 72.9
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.9e-88 329.7 236 72.5
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 9.1e-86 320.9 244 70.5
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 1.4e-83 313.5 236 68.2
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 1.2e-82 310.5 244 65.6
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 2.7e-82 309.3 241 66.0
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 1.5e-80 303.5 243 64.2
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 5.7e-80 301.6 252 61.1
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 9.7e-80 300.8 236 66.9
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.7e-79 300.1 236 64.4
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 1.7e-79 300.1 244 62.7
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 4.8e-79 298.5 236 66.1
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.5e-77 293.5 247 59.9
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 7.7e-77 291.2 236 65.3
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 7.7e-77 291.2 219 69.4
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.0e-76 290.8 236 65.3
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 2.9e-76 289.3 241 61.0
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 3.8e-76 288.9 244 62.3
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 3.8e-76 288.9 242 62.8
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 1.1e-75 287.3 244 62.3
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 1.4e-75 287.0 241 63.1
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 1.9e-75 286.6 239 60.7
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 2.5e-75 286.2 244 59.8
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 9.4e-75 284.3 240 62.1
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 9.4e-75 284.3 240 62.1
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 1.2e-74 283.9 242 62.4
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 4.7e-74 282.0 236 60.2
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.0e-73 280.8 239 61.5
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.0e-73 280.8 242 60.7
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 1.8e-73 280.0 239 60.7
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 9.7e-72 274.2 244 56.6
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 1.3e-71 273.9 243 61.3
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 1.4e-70 270.4 239 58.2
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 2.4e-70 269.6 238 60.5
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 2.4e-70 269.6 267 55.8
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 5.0e-68 261.9 255 55.3
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 5.0e-68 261.9 232 58.6
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 2.5e-67 259.6 236 55.1
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 5.5e-67 258.5 208 65.4
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 9.4e-67 257.7 205 65.4
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 1.2e-66 257.3 205 64.9
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 3.6e-66 255.8 229 59.8
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 5.2e-65 251.9 239 55.6
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 9.7e-64 247.7 218 61.5
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 1.7e-63 246.9 245 53.9
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 8.2e-63 244.6 196 63.8
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 8.2e-63 244.6 232 55.2
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.8e-62 243.4 205 61.5
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 5.3e-62 241.9 200 63.5
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 3.5e-61 239.2 236 53.4
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.0e-60 237.7 246 51.2
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 1.7e-60 236.9 238 53.8
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 2.9e-60 236.1 246 50.8
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 6.5e-60 235.0 246 50.4
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.1e-59 234.2 236 50.8
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.1e-59 234.2 243 49.4
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 2.5e-59 233.0 246 50.8
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 3.2e-59 232.6 196 64.3
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 4.2e-59 232.3 246 49.6
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 7.2e-59 231.5 228 52.6
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 1.2e-58 230.7 246 50.4
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 1.2e-58 230.7 246 50.4
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 1.6e-58 230.3 206 60.2
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.1e-58 229.9 246 54.1
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 8.0e-58 228.0 246 50.4
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 1.4e-57 227.3 246 50.4
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 1.8e-57 226.9 249 47.8
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 1.8e-57 226.9 242 48.8
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 3.0e-57 226.1 195 60.5
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 6.8e-57 224.9 240 50.0
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 1.5e-56 223.8 291 46.7
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 5.7e-56 221.9 244 50.0
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.1e-54 217.6 254 48.4
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.4e-54 217.2 235 50.2
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.3e-52 210.7 236 51.3
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 6.5e-52 208.4 185 59.5
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 8.6e-52 208.0 241 46.5
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 1.5e-51 207.2 234 46.6
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.2e-50 204.1 245 46.1
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.6e-50 203.8 205 54.6
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 3.6e-50 202.6 196 55.6
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 2.3e-49 199.9 235 47.7
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 5.7e-48 195.3 235 44.3
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.3e-47 194.1 236 49.2
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.7e-45 186.4 276 42.4
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 2.9e-44 183.0 197 49.7
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 8.6e-44 181.4 227 46.7
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 2.3e-41 173.3 235 40.0
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 2.6e-40 169.9 184 49.5
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 3.4e-40 169.5 167 53.9
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 7.5e-40 168.3 227 41.9
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 2.2e-39 166.8 224 39.3
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 6.4e-39 165.2 234 38.9
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 6.6e-36 155.2 236 39.4
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 6.6e-36 155.2 229 40.6
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 7.3e-35 151.8 239 33.5
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 2.3e-33 146.7 199 40.7
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 2.0e-32 143.7 157 49.0
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.7e-31 140.6 234 38.0
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 4.9e-31 139.0 232 36.2
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-30 137.9 230 33.0
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 2.4e-30 136.7 109 61.5
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 1.2e-29 134.4 107 63.6
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 2.7e-29 133.3 120 56.7
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 1.6e-26 124.0 105 62.9
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 1.1e-25 121.3 240 35.0
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 4.0e-25 119.4 107 57.0
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.4e-24 115.9 145 41.4
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 2.9e-23 113.2 204 35.8
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 1.4e-22 110.9 111 50.5
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 2.4e-22 110.2 106 56.6
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 4.1e-22 109.4 181 38.7
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 1.9e-19 100.5 121 45.5
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 1.2e-16 91.3 126 41.3
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 2.0e-16 90.5 107 43.0
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 3.4e-16 89.7 119 47.9
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 4.4e-16 89.4 122 41.8
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 1.3e-15 87.8 106 46.2
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 8.7e-12 75.1 164 33.5
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 5.6e-11 72.4 219 26.5
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 1.2e-10 71.2 71 45.1
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 5.2e-09 65.9 71 39.4
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 1.3e-07 61.2 75 44.0
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 8.4e-07 58.5 105 34.3
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 2.4e-06 57.0 114 34.2
Pp3c18_14820 Physcomitrium patens HOM05D005414 ORTHO05D006844 4.2e-06 56.2 42 64.3


User provided reference genes

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